Wall clock time and date at job start Tue Mar 31 2020 03:49:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53003 * 109.46808 * 2 1
4 4 N 1.46900 * 109.46970 * 119.99623 * 2 1 3
5 5 C 1.46893 * 111.00059 * 298.95769 * 4 2 1
6 6 C 1.46900 * 110.99839 * 175.00393 * 4 2 1
7 7 C 1.53002 * 109.46865 * 288.09175 * 6 4 2
8 8 H 1.08998 * 109.47504 * 58.26964 * 7 6 4
9 9 O 1.42907 * 109.47307 * 298.26570 * 7 6 4
10 10 C 1.52996 * 109.46968 * 178.27238 * 7 6 4
11 11 N 1.46902 * 109.47506 * 185.00086 * 10 7 6
12 12 C 1.46957 * 111.00167 * 66.19416 * 11 10 7
13 13 C 1.53050 * 109.36688 * 183.19259 * 12 11 10
14 14 N 1.46953 * 109.36300 * 301.60031 * 13 12 11
15 15 C 1.46899 * 110.99836 * 183.18584 * 14 13 12
16 16 C 1.50699 * 109.47134 * 169.99937 * 15 14 13
17 17 H 1.08002 * 119.99787 * 0.02562 * 16 15 14
18 18 C 1.37877 * 120.00003 * 180.02562 * 16 15 14
19 19 N 1.31503 * 120.00280 * 0.02562 * 18 16 15
20 20 Si 1.86808 * 119.99952 * 180.02562 * 18 16 15
21 21 H 1.48494 * 109.47118 * 59.99726 * 20 18 16
22 22 H 1.48493 * 109.47072 * 180.02562 * 20 18 16
23 23 H 1.48501 * 109.46666 * 299.99685 * 20 18 16
24 24 C 1.46964 * 110.88018 * 59.32083 * 14 13 12
25 25 C 1.46953 * 111.00208 * 189.99738 * 11 10 7
26 26 H 1.08990 * 109.47402 * 300.00455 * 1 2 3
27 27 H 1.09009 * 109.46588 * 60.00368 * 1 2 3
28 28 H 1.09001 * 109.46759 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47276 * 240.00118 * 2 1 3
30 30 H 1.08997 * 109.47251 * 299.99580 * 3 2 1
31 31 H 1.09000 * 109.47105 * 60.00014 * 3 2 1
32 32 H 1.08999 * 109.46725 * 179.97438 * 3 2 1
33 33 H 1.08996 * 109.47878 * 298.70625 * 5 4 2
34 34 H 1.09006 * 109.47637 * 58.71104 * 5 4 2
35 35 H 1.09001 * 109.47340 * 178.70581 * 5 4 2
36 36 H 1.08995 * 109.46862 * 168.09626 * 6 4 2
37 37 H 1.08996 * 109.46981 * 48.09128 * 6 4 2
38 38 H 0.96697 * 113.99891 * 300.00763 * 9 7 6
39 39 H 1.08995 * 109.47571 * 64.99693 * 10 7 6
40 40 H 1.09005 * 109.46941 * 304.99370 * 10 7 6
41 41 H 1.08994 * 109.48707 * 63.22200 * 12 11 10
42 42 H 1.08999 * 109.48810 * 303.16254 * 12 11 10
43 43 H 1.08996 * 109.48528 * 181.63028 * 13 12 11
44 44 H 1.09000 * 109.48687 * 61.56703 * 13 12 11
45 45 H 1.08999 * 109.47482 * 290.00333 * 15 14 13
46 46 H 1.09002 * 109.46769 * 50.00247 * 15 14 13
47 47 H 0.97001 * 120.00338 * 180.02562 * 19 18 16
48 48 H 1.08997 * 109.48745 * 60.64444 * 24 14 13
49 49 H 1.08998 * 109.48452 * 180.68972 * 24 14 13
50 50 H 1.09001 * 109.48753 * 56.84865 * 25 11 10
51 51 H 1.09000 * 109.49030 * 296.77455 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0197 -0.6924 1.1995
5 6 1.5691 -0.0120 2.4209
6 6 3.4832 -0.8163 1.1752
7 6 3.8901 -1.8506 0.1237
8 1 3.5098 -1.5464 -0.8514
9 8 3.3436 -3.1243 0.4719
10 6 5.4159 -1.9484 0.0682
11 7 5.8095 -2.8512 -1.0217
12 6 5.4508 -2.2855 -2.3297
13 6 5.8040 -3.2884 -3.4306
14 7 7.2400 -3.5945 -3.3683
15 6 7.6335 -4.4974 -4.4582
16 6 9.1364 -4.5936 -4.5129
17 1 9.7389 -4.0398 -3.8082
18 6 9.7422 -5.3887 -5.4626
19 7 9.0085 -6.0627 -6.3210
20 14 11.6052 -5.5086 -5.5300
21 1 12.1140 -6.0396 -4.2399
22 1 12.0030 -6.4202 -6.6326
23 1 12.1794 -4.1605 -5.7714
24 6 7.5987 -4.1603 -2.0603
25 6 7.2455 -3.1573 -0.9594
26 1 -0.3634 0.5138 0.8898
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3633 -1.0277 -0.0005
29 1 1.8934 -0.5138 -0.8900
30 1 1.6767 1.9563 -0.8900
31 1 1.6766 1.9564 0.8900
32 1 3.1300 1.4425 0.0005
33 1 1.9668 1.0026 2.4395
34 1 0.4798 0.0244 2.4359
35 1 1.9263 -0.5582 3.2939
36 1 3.8370 -1.1361 2.1553
37 1 3.9254 0.1483 0.9262
38 1 3.6395 -3.4580 1.3299
39 1 5.7898 -2.3375 1.0152
40 1 5.8371 -0.9589 -0.1097
41 1 6.0039 -1.3601 -2.4897
42 1 4.3808 -2.0790 -2.3555
43 1 5.5655 -2.8591 -4.4037
44 1 5.2304 -4.2039 -3.2861
45 1 7.2122 -5.4868 -4.2804
46 1 7.2596 -4.1082 -5.4053
47 1 9.4347 -6.6223 -6.9889
48 1 7.0455 -5.0857 -1.9003
49 1 8.6686 -4.3671 -2.0346
50 1 7.4839 -3.5867 0.0137
51 1 7.8191 -2.2418 -1.1039
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595393117.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:49:11
Heat of formation + Delta-G solvation = -30.606203 kcal
Electronic energy + Delta-G solvation = -25627.513605 eV
Core-core repulsion = 22176.077297 eV
Total energy + Delta-G solvation = -3451.436308 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 299.231 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-39.58334 -38.56262 -36.72904 -34.67003 -32.48467 -32.14961 -30.52880 -30.18084
-28.26576 -27.43387 -26.32037 -24.95481 -23.59764 -22.94708 -21.78792 -21.04185
-19.69132 -19.10671 -16.90259 -16.41108 -16.25587 -15.88682 -15.50943 -15.25764
-14.74187 -14.46625 -14.41976 -14.27719 -14.17600 -13.66552 -13.49225 -13.26964
-13.22716 -12.64135 -12.58458 -12.22674 -12.09184 -12.02714 -11.81157 -11.63868
-11.50790 -11.47947 -11.17390 -11.10254 -10.86679 -10.81477 -10.65449 -10.58395
-10.34325 -10.28221 -9.85951 -9.64882 -9.14824 -8.48876 -8.41037 -8.05013
-7.18137 -5.99797 -4.01343 3.34697 3.38696 3.41412 3.49007 4.06149
4.44217 4.45735 4.58981 4.62396 4.74975 4.90144 4.95996 5.02339
5.04229 5.09782 5.19799 5.23605 5.27862 5.30182 5.35468 5.39520
5.44661 5.52060 5.57061 5.60633 5.61467 5.71740 5.79636 5.82880
5.90299 5.93904 5.99957 5.99993 6.09187 6.26879 6.49932 6.64263
6.72882 6.77461 6.81398 7.22643 7.26882 7.39896 7.42531 7.82282
7.82766 8.12958 8.25231 8.59119 9.05879 9.62609 11.11072
Molecular weight = 299.23amu
Principal moments of inertia in cm(-1)
A = 0.034025 B = 0.002597 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 822.725000 B =10777.769102 C =11048.949904
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.072 3.928
3 C -0.190 4.190
4 N -0.523 5.523
5 C 0.018 3.982
6 C 0.018 3.982
7 C 0.119 3.881
8 H 0.096 0.904
9 O -0.533 6.533
10 C 0.024 3.976
11 N -0.527 5.527
12 C 0.061 3.939
13 C 0.057 3.943
14 N -0.539 5.539
15 C 0.194 3.806
16 C -0.508 4.508
17 H 0.061 0.939
18 C 0.055 3.945
19 N -0.898 5.898
20 Si 0.898 3.102
21 H -0.277 1.277
22 H -0.288 1.288
23 H -0.277 1.277
24 C 0.068 3.932
25 C 0.059 3.941
26 H 0.054 0.946
27 H 0.058 0.942
28 H 0.065 0.935
29 H 0.085 0.915
30 H 0.062 0.938
31 H 0.057 0.943
32 H 0.056 0.944
33 H 0.026 0.974
34 H 0.071 0.929
35 H 0.064 0.936
36 H 0.075 0.925
37 H 0.046 0.954
38 H 0.366 0.634
39 H 0.074 0.926
40 H 0.036 0.964
41 H 0.035 0.965
42 H 0.069 0.931
43 H 0.070 0.930
44 H 0.032 0.968
45 H -0.008 1.008
46 H 0.029 0.971
47 H 0.262 0.738
48 H 0.029 0.971
49 H 0.085 0.915
50 H 0.068 0.932
51 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.514 13.584 17.344 26.382
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.036 4.036
3 C -0.249 4.249
4 N -0.246 5.246
5 C -0.130 4.130
6 C -0.111 4.111
7 C 0.058 3.942
8 H 0.114 0.886
9 O -0.336 6.336
10 C -0.105 4.105
11 N -0.252 5.252
12 C -0.067 4.067
13 C -0.072 4.072
14 N -0.265 5.265
15 C 0.069 3.931
16 C -0.546 4.546
17 H 0.080 0.920
18 C -0.146 4.146
19 N -0.538 5.538
20 Si 0.726 3.274
21 H -0.203 1.203
22 H -0.214 1.214
23 H -0.202 1.202
24 C -0.061 4.061
25 C -0.069 4.069
26 H 0.073 0.927
27 H 0.077 0.923
28 H 0.084 0.916
29 H 0.103 0.897
30 H 0.081 0.919
31 H 0.076 0.924
32 H 0.075 0.925
33 H 0.045 0.955
34 H 0.089 0.911
35 H 0.083 0.917
36 H 0.094 0.906
37 H 0.064 0.936
38 H 0.212 0.788
39 H 0.092 0.908
40 H 0.054 0.946
41 H 0.053 0.947
42 H 0.088 0.912
43 H 0.088 0.912
44 H 0.050 0.950
45 H 0.010 0.990
46 H 0.047 0.953
47 H 0.071 0.929
48 H 0.048 0.952
49 H 0.104 0.896
50 H 0.087 0.913
51 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -14.991 13.038 16.594 25.886
hybrid contribution 1.724 0.786 0.404 1.937
sum -13.267 13.824 16.997 25.613
Atomic orbital electron populations
1.21848 0.94201 1.02623 1.01451 1.21751 0.95952 0.92046 0.93878
1.22500 1.01558 0.98368 1.02450 1.62151 1.09982 1.50515 1.01925
1.22464 1.01372 0.96698 0.92463 1.22916 0.88459 0.99145 1.00604
1.21860 0.91015 0.83652 0.97634 0.88612 1.86650 1.71863 1.34205
1.40918 1.22779 0.96296 0.95436 0.96035 1.62078 1.17377 1.43470
1.02255 1.22192 0.99434 0.96480 0.88637 1.22040 0.90646 0.97437
0.97064 1.62289 1.13156 1.47375 1.03649 1.19690 0.96175 0.89013
0.88240 1.21116 0.91260 1.26570 1.15675 0.92034 1.24990 0.98394
0.95633 0.95595 1.69946 1.35303 1.29745 1.18800 0.86566 0.85456
0.77888 0.77512 1.20283 1.21364 1.20232 1.21975 1.01402 0.94401
0.88293 1.22247 0.86687 0.98898 0.99080 0.92746 0.92309 0.91605
0.89701 0.91857 0.92386 0.92465 0.95533 0.91052 0.91670 0.90632
0.93606 0.78792 0.90763 0.94603 0.94656 0.91225 0.91155 0.94971
0.99038 0.95274 0.92874 0.95228 0.89641 0.91313 0.94584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.08 8.99 37.16 0.33 -0.75 16
2 C 0.07 0.61 2.85 -67.71 -0.19 0.42 16
3 C -0.19 -1.40 8.53 37.16 0.32 -1.09 16
4 N -0.52 -4.59 4.60 -234.89 -1.08 -5.67 16
5 C 0.02 0.13 8.77 60.06 0.53 0.66 16
6 C 0.02 0.15 4.51 -3.82 -0.02 0.13 16
7 C 0.12 1.25 2.94 -26.73 -0.08 1.17 16
8 H 0.10 1.14 4.75 -51.93 -0.25 0.89 16
9 O -0.53 -6.54 13.18 -35.23 -0.46 -7.00 16
10 C 0.02 0.27 4.59 -3.82 -0.02 0.25 16
11 N -0.53 -7.91 4.66 -234.47 -1.09 -9.00 16
12 C 0.06 0.95 5.42 -3.77 -0.02 0.93 16
13 C 0.06 1.10 5.61 -3.77 -0.02 1.08 16
14 N -0.54 -12.07 4.70 -235.91 -1.11 -13.18 16
15 C 0.19 5.19 4.72 -4.98 -0.02 5.17 16
16 C -0.51 -14.44 8.47 -34.44 -0.29 -14.74 16
17 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16
18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16
19 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16
20 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16
21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16
23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
24 C 0.07 1.37 5.43 -3.76 -0.02 1.35 16
25 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16
26 H 0.05 0.37 6.40 -51.93 -0.33 0.04 16
27 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16
28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.08 0.83 6.50 -51.93 -0.34 0.49 16
30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
31 H 0.06 0.40 6.41 -51.93 -0.33 0.07 16
32 H 0.06 0.44 6.30 -51.93 -0.33 0.12 16
33 H 0.03 0.18 6.35 -51.93 -0.33 -0.15 16
34 H 0.07 0.48 6.26 -51.93 -0.33 0.15 16
35 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16
36 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16
37 H 0.05 0.38 5.98 -51.93 -0.31 0.07 16
38 H 0.37 3.36 9.04 45.56 0.41 3.78 16
39 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16
40 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16
41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
42 H 0.07 0.99 6.25 -51.93 -0.32 0.66 16
43 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16
44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
45 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16
46 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16
47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
48 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16
49 H 0.09 1.82 6.79 -51.93 -0.35 1.47 16
50 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16
51 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
LS Contribution 381.03 15.07 5.74 5.74
Total: -1.00 -31.46 381.03 -10.53 -41.99
By element:
Atomic # 1 Polarization: 8.27 SS G_CDS: -8.62 Total: -0.35 kcal
Atomic # 6 Polarization: -3.37 SS G_CDS: 0.38 Total: -3.00 kcal
Atomic # 7 Polarization: -51.63 SS G_CDS: -2.55 Total: -54.18 kcal
Atomic # 8 Polarization: -6.54 SS G_CDS: -0.46 Total: -7.00 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -31.46 -10.53 -41.99 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595393117.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.386 kcal
(2) G-P(sol) polarization free energy of solvation -31.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.073 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.606 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds