Wall clock time and date at job start Tue Mar 31 2020 03:49:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53003 * 109.46808 * 2 1
4 4 N 1.46900 * 109.46970 * 119.99623 * 2 1 3
5 5 C 1.46893 * 111.00059 * 298.95769 * 4 2 1
6 6 C 1.46900 * 110.99839 * 175.00393 * 4 2 1
7 7 C 1.53002 * 109.46865 * 288.09175 * 6 4 2
8 8 H 1.08998 * 109.47504 * 58.26964 * 7 6 4
9 9 O 1.42907 * 109.47307 * 298.26570 * 7 6 4
10 10 C 1.52996 * 109.46968 * 178.27238 * 7 6 4
11 11 N 1.46902 * 109.47506 * 185.00086 * 10 7 6
12 12 C 1.46957 * 111.00167 * 66.19416 * 11 10 7
13 13 C 1.53050 * 109.36688 * 183.19259 * 12 11 10
14 14 N 1.46953 * 109.36300 * 301.60031 * 13 12 11
15 15 C 1.46899 * 110.99836 * 183.18584 * 14 13 12
16 16 C 1.50699 * 109.47134 * 169.99937 * 15 14 13
17 17 H 1.08002 * 119.99787 * 0.02562 * 16 15 14
18 18 C 1.37877 * 120.00003 * 180.02562 * 16 15 14
19 19 N 1.31503 * 120.00280 * 0.02562 * 18 16 15
20 20 Si 1.86808 * 119.99952 * 180.02562 * 18 16 15
21 21 H 1.48494 * 109.47118 * 59.99726 * 20 18 16
22 22 H 1.48493 * 109.47072 * 180.02562 * 20 18 16
23 23 H 1.48501 * 109.46666 * 299.99685 * 20 18 16
24 24 C 1.46964 * 110.88018 * 59.32083 * 14 13 12
25 25 C 1.46953 * 111.00208 * 189.99738 * 11 10 7
26 26 H 1.08990 * 109.47402 * 300.00455 * 1 2 3
27 27 H 1.09009 * 109.46588 * 60.00368 * 1 2 3
28 28 H 1.09001 * 109.46759 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47276 * 240.00118 * 2 1 3
30 30 H 1.08997 * 109.47251 * 299.99580 * 3 2 1
31 31 H 1.09000 * 109.47105 * 60.00014 * 3 2 1
32 32 H 1.08999 * 109.46725 * 179.97438 * 3 2 1
33 33 H 1.08996 * 109.47878 * 298.70625 * 5 4 2
34 34 H 1.09006 * 109.47637 * 58.71104 * 5 4 2
35 35 H 1.09001 * 109.47340 * 178.70581 * 5 4 2
36 36 H 1.08995 * 109.46862 * 168.09626 * 6 4 2
37 37 H 1.08996 * 109.46981 * 48.09128 * 6 4 2
38 38 H 0.96697 * 113.99891 * 300.00763 * 9 7 6
39 39 H 1.08995 * 109.47571 * 64.99693 * 10 7 6
40 40 H 1.09005 * 109.46941 * 304.99370 * 10 7 6
41 41 H 1.08994 * 109.48707 * 63.22200 * 12 11 10
42 42 H 1.08999 * 109.48810 * 303.16254 * 12 11 10
43 43 H 1.08996 * 109.48528 * 181.63028 * 13 12 11
44 44 H 1.09000 * 109.48687 * 61.56703 * 13 12 11
45 45 H 1.08999 * 109.47482 * 290.00333 * 15 14 13
46 46 H 1.09002 * 109.46769 * 50.00247 * 15 14 13
47 47 H 0.97001 * 120.00338 * 180.02562 * 19 18 16
48 48 H 1.08997 * 109.48745 * 60.64444 * 24 14 13
49 49 H 1.08998 * 109.48452 * 180.68972 * 24 14 13
50 50 H 1.09001 * 109.48753 * 56.84865 * 25 11 10
51 51 H 1.09000 * 109.49030 * 296.77455 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0197 -0.6924 1.1995
5 6 1.5691 -0.0120 2.4209
6 6 3.4832 -0.8163 1.1752
7 6 3.8901 -1.8506 0.1237
8 1 3.5098 -1.5464 -0.8514
9 8 3.3436 -3.1243 0.4719
10 6 5.4159 -1.9484 0.0682
11 7 5.8095 -2.8512 -1.0217
12 6 5.4508 -2.2855 -2.3297
13 6 5.8040 -3.2884 -3.4306
14 7 7.2400 -3.5945 -3.3683
15 6 7.6335 -4.4974 -4.4582
16 6 9.1364 -4.5936 -4.5129
17 1 9.7389 -4.0398 -3.8082
18 6 9.7422 -5.3887 -5.4626
19 7 9.0085 -6.0627 -6.3210
20 14 11.6052 -5.5086 -5.5300
21 1 12.1140 -6.0396 -4.2399
22 1 12.0030 -6.4202 -6.6326
23 1 12.1794 -4.1605 -5.7714
24 6 7.5987 -4.1603 -2.0603
25 6 7.2455 -3.1573 -0.9594
26 1 -0.3634 0.5138 0.8898
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3633 -1.0277 -0.0005
29 1 1.8934 -0.5138 -0.8900
30 1 1.6767 1.9563 -0.8900
31 1 1.6766 1.9564 0.8900
32 1 3.1300 1.4425 0.0005
33 1 1.9668 1.0026 2.4395
34 1 0.4798 0.0244 2.4359
35 1 1.9263 -0.5582 3.2939
36 1 3.8370 -1.1361 2.1553
37 1 3.9254 0.1483 0.9262
38 1 3.6395 -3.4580 1.3299
39 1 5.7898 -2.3375 1.0152
40 1 5.8371 -0.9589 -0.1097
41 1 6.0039 -1.3601 -2.4897
42 1 4.3808 -2.0790 -2.3555
43 1 5.5655 -2.8591 -4.4037
44 1 5.2304 -4.2039 -3.2861
45 1 7.2122 -5.4868 -4.2804
46 1 7.2596 -4.1082 -5.4053
47 1 9.4347 -6.6223 -6.9889
48 1 7.0455 -5.0857 -1.9003
49 1 8.6686 -4.3671 -2.0346
50 1 7.4839 -3.5867 0.0137
51 1 7.8191 -2.2418 -1.1039
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000595393117.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:49:10
Heat of formation + Delta-G solvation = -56.398672 kcal
Electronic energy + Delta-G solvation = -25628.632050 eV
Core-core repulsion = 22176.077297 eV
Total energy + Delta-G solvation = -3452.554754 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 299.231 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.55545 -39.66378 -37.76881 -36.15393 -34.50890 -32.85157 -31.91135 -31.29000
-29.64178 -28.20408 -27.55907 -26.18080 -24.68340 -24.36333 -23.36174 -22.24526
-20.66204 -20.29541 -18.49776 -17.78360 -17.21021 -16.86044 -16.65789 -16.32408
-16.15297 -15.88078 -15.66665 -15.40278 -15.09236 -15.07352 -14.79455 -14.53741
-14.06727 -14.00840 -13.54906 -13.43944 -13.14819 -13.00245 -12.84400 -12.74143
-12.64387 -12.58596 -12.49523 -12.26128 -12.25147 -12.15109 -12.10493 -12.01358
-11.68814 -11.52087 -11.38431 -11.18068 -10.69550 -10.62287 -9.26161 -9.09533
-9.04413 -8.21189 -6.32334 1.40541 1.44433 1.52348 2.39736 2.70943
3.10322 3.11472 3.28470 3.71657 3.80686 3.94781 3.96912 4.11256
4.15658 4.20564 4.27028 4.33784 4.37938 4.42407 4.45490 4.48304
4.58225 4.61443 4.66863 4.70934 4.74100 4.75324 4.83008 4.85697
4.95984 4.96335 5.01068 5.05188 5.06520 5.11627 5.18788 5.22548
5.26224 5.31716 5.39987 5.62320 5.99978 6.05266 6.09454 6.20491
6.22197 6.34436 6.59976 6.83215 7.09844 7.37482 8.90138
Molecular weight = 299.23amu
Principal moments of inertia in cm(-1)
A = 0.034025 B = 0.002597 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 822.725000 B =10777.769102 C =11048.949904
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.070 3.930
3 C -0.184 4.184
4 N -0.537 5.537
5 C 0.019 3.981
6 C 0.026 3.974
7 C 0.125 3.875
8 H 0.080 0.920
9 O -0.556 6.556
10 C 0.028 3.972
11 N -0.539 5.539
12 C 0.073 3.927
13 C 0.055 3.945
14 N -0.544 5.544
15 C 0.209 3.791
16 C -0.525 4.525
17 H 0.064 0.936
18 C 0.000 4.000
19 N -0.936 5.936
20 Si 0.973 3.027
21 H -0.265 1.265
22 H -0.283 1.283
23 H -0.267 1.267
24 C 0.068 3.932
25 C 0.071 3.929
26 H 0.063 0.937
27 H 0.065 0.935
28 H 0.051 0.949
29 H 0.067 0.933
30 H 0.065 0.935
31 H 0.064 0.936
32 H 0.053 0.947
33 H 0.032 0.968
34 H 0.073 0.927
35 H 0.071 0.929
36 H 0.089 0.911
37 H 0.051 0.949
38 H 0.379 0.621
39 H 0.094 0.906
40 H 0.046 0.954
41 H 0.038 0.962
42 H 0.088 0.912
43 H 0.068 0.932
44 H 0.016 0.984
45 H -0.043 1.043
46 H 0.002 0.998
47 H 0.265 0.735
48 H 0.012 0.988
49 H 0.070 0.930
50 H 0.096 0.904
51 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.936 15.206 19.513 28.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.039 4.039
3 C -0.242 4.242
4 N -0.261 5.261
5 C -0.128 4.128
6 C -0.103 4.103
7 C 0.065 3.935
8 H 0.097 0.903
9 O -0.361 6.361
10 C -0.100 4.100
11 N -0.264 5.264
12 C -0.055 4.055
13 C -0.073 4.073
14 N -0.268 5.268
15 C 0.083 3.917
16 C -0.563 4.563
17 H 0.083 0.917
18 C -0.198 4.198
19 N -0.576 5.576
20 Si 0.797 3.203
21 H -0.190 1.190
22 H -0.208 1.208
23 H -0.192 1.192
24 C -0.060 4.060
25 C -0.057 4.057
26 H 0.082 0.918
27 H 0.084 0.916
28 H 0.071 0.929
29 H 0.086 0.914
30 H 0.084 0.916
31 H 0.083 0.917
32 H 0.072 0.928
33 H 0.051 0.949
34 H 0.092 0.908
35 H 0.089 0.911
36 H 0.108 0.892
37 H 0.069 0.931
38 H 0.227 0.773
39 H 0.112 0.888
40 H 0.064 0.936
41 H 0.056 0.944
42 H 0.106 0.894
43 H 0.087 0.913
44 H 0.034 0.966
45 H -0.025 1.025
46 H 0.020 0.980
47 H 0.074 0.926
48 H 0.031 0.969
49 H 0.088 0.912
50 H 0.114 0.886
51 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -14.429 14.681 18.801 27.878
hybrid contribution 1.449 0.257 -0.264 1.495
sum -12.980 14.938 18.537 27.116
Atomic orbital electron populations
1.21815 0.93732 1.01968 1.02259 1.21734 0.96361 0.92493 0.93276
1.22432 1.01272 0.97620 1.02923 1.62124 1.10176 1.51235 1.02535
1.22482 1.01571 0.96943 0.91850 1.22802 0.88475 0.98583 1.00449
1.21771 0.90286 0.83734 0.97696 0.90250 1.86616 1.72374 1.35096
1.42058 1.22844 0.96787 0.95163 0.95233 1.62042 1.16524 1.45058
1.02787 1.22039 1.00525 0.94988 0.87961 1.22127 0.88505 0.97815
0.98889 1.62244 1.15249 1.45820 1.03536 1.19346 0.95674 0.87930
0.88790 1.21408 0.91991 1.26892 1.15981 0.91750 1.25974 1.03979
0.94933 0.94926 1.70089 1.37675 1.30382 1.19470 0.85383 0.78644
0.78284 0.77987 1.19030 1.20834 1.19216 1.21987 1.00204 0.95233
0.88588 1.22101 0.87523 0.97691 0.98355 0.91815 0.91647 0.92949
0.91436 0.91551 0.91736 0.92772 0.94936 0.90828 0.91054 0.89221
0.93056 0.77340 0.88774 0.93591 0.94372 0.89424 0.91312 0.96578
1.02504 0.97974 0.92626 0.96943 0.91197 0.88555 0.94430
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.96 8.99 71.98 0.65 -1.31 16
2 C 0.07 1.09 2.85 44.92 0.13 1.22 16
3 C -0.18 -2.37 8.53 71.98 0.61 -1.76 16
4 N -0.54 -8.42 4.60 -897.06 -4.13 -12.55 16
5 C 0.02 0.23 8.77 127.69 1.12 1.35 16
6 C 0.03 0.37 4.51 86.30 0.39 0.76 16
7 C 0.13 2.39 2.94 30.59 0.09 2.48 16
8 H 0.08 1.79 4.75 -2.39 -0.01 1.78 16
9 O -0.56 -12.73 13.18 -148.98 -1.96 -14.70 16
10 C 0.03 0.55 4.59 86.30 0.40 0.95 16
11 N -0.54 -15.23 4.66 -895.73 -4.17 -19.40 16
12 C 0.07 2.23 5.42 86.31 0.47 2.70 16
13 C 0.06 2.18 5.61 86.31 0.48 2.66 16
14 N -0.54 -25.01 4.70 -900.29 -4.23 -29.24 16
15 C 0.21 11.75 4.72 85.56 0.40 12.16 16
16 C -0.52 -30.56 8.47 25.60 0.22 -30.34 16
17 H 0.06 3.64 7.13 -2.91 -0.02 3.62 16
18 C 0.00 -0.01 5.46 84.66 0.46 0.45 16
19 N -0.94 -57.78 13.29 21.45 0.28 -57.50 16
20 Si 0.97 44.82 29.54 68.60 2.03 46.85 16
21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16
23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16
24 C 0.07 2.80 5.43 86.31 0.47 3.26 16
25 C 0.07 2.17 5.61 86.31 0.48 2.65 16
26 H 0.06 0.76 6.40 -2.39 -0.02 0.74 16
27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16
28 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16
29 H 0.07 1.28 6.50 -2.39 -0.02 1.26 16
30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.06 0.75 6.41 -2.39 -0.02 0.73 16
32 H 0.05 0.73 6.30 -2.39 -0.02 0.72 16
33 H 0.03 0.35 6.35 -2.39 -0.02 0.33 16
34 H 0.07 0.84 6.26 -2.38 -0.01 0.82 16
35 H 0.07 0.76 8.03 -2.39 -0.02 0.74 16
36 H 0.09 1.05 7.92 -2.39 -0.02 1.03 16
37 H 0.05 0.70 5.98 -2.39 -0.01 0.69 16
38 H 0.38 6.17 9.04 -74.06 -0.67 5.50 16
39 H 0.09 1.53 8.03 -2.39 -0.02 1.51 16
40 H 0.05 0.86 8.12 -2.38 -0.02 0.84 16
41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
42 H 0.09 2.39 6.25 -2.39 -0.01 2.37 16
43 H 0.07 2.67 8.07 -2.39 -0.02 2.65 16
44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16
45 H -0.04 -2.64 8.12 -2.39 -0.02 -2.66 16
46 H 0.00 0.13 8.03 -2.39 -0.02 0.11 16
47 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16
48 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
49 H 0.07 3.03 6.79 -2.39 -0.02 3.02 16
50 H 0.10 2.43 8.07 -2.39 -0.02 2.41 16
51 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16
Total: -1.00 -69.19 381.03 -5.59 -74.79
By element:
Atomic # 1 Polarization: 14.30 SS G_CDS: 0.22 Total: 14.52 kcal
Atomic # 6 Polarization: -9.14 SS G_CDS: 6.37 Total: -2.77 kcal
Atomic # 7 Polarization: -106.44 SS G_CDS: -12.25 Total: -118.69 kcal
Atomic # 8 Polarization: -12.73 SS G_CDS: -1.96 Total: -14.70 kcal
Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal
Total: -69.19 -5.59 -74.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595393117.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.387 kcal
(2) G-P(sol) polarization free energy of solvation -69.191 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.785 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.399 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds