Wall clock time and date at job start Tue Mar 31 2020 03:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00180 * 2 1 4 4 C 1.52999 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47064 * 305.00479 * 4 3 2 6 6 C 1.53009 * 109.47064 * 64.99598 * 4 3 2 7 7 C 1.52991 * 109.47483 * 185.00005 * 4 3 2 8 8 N 1.46495 * 109.47394 * 175.00043 * 7 4 3 9 9 C 1.34776 * 120.00155 * 180.02562 * 8 7 4 10 10 O 1.21589 * 120.00285 * 354.91448 * 9 8 7 11 11 N 1.34781 * 120.00087 * 174.91664 * 9 8 7 12 12 C 1.47083 * 120.88145 * 184.71405 * 11 9 8 13 13 C 1.53690 * 108.27303 * 128.75601 * 12 11 9 14 14 N 1.46902 * 109.26042 * 54.08332 * 13 12 11 15 15 C 1.46901 * 110.99866 * 172.60229 * 14 13 12 16 16 C 1.50696 * 109.47364 * 294.30055 * 15 14 13 17 17 H 1.07999 * 120.00187 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99520 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99557 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47235 * 59.99630 * 20 18 16 22 22 H 1.48501 * 109.46791 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46881 * 299.99416 * 20 18 16 24 24 C 1.46895 * 111.26940 * 296.75452 * 14 13 12 25 25 C 1.47076 * 120.88035 * 4.99588 * 11 9 8 26 26 H 1.09004 * 109.46739 * 299.99918 * 1 2 3 27 27 H 1.08996 * 109.46857 * 59.99699 * 1 2 3 28 28 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47256 * 60.00104 * 3 2 1 30 30 H 1.09000 * 109.47388 * 299.99983 * 3 2 1 31 31 H 1.08998 * 109.46461 * 60.00512 * 6 4 3 32 32 H 1.08993 * 109.46630 * 180.02562 * 6 4 3 33 33 H 1.08995 * 109.47296 * 300.00220 * 6 4 3 34 34 H 1.09000 * 109.47108 * 54.99850 * 7 4 3 35 35 H 1.09001 * 109.47230 * 295.00221 * 7 4 3 36 36 H 0.97002 * 119.99927 * 359.97438 * 8 7 4 37 37 H 1.09001 * 109.62702 * 248.52586 * 12 11 9 38 38 H 1.09001 * 109.62840 * 9.10560 * 12 11 9 39 39 H 1.09004 * 109.65112 * 294.07654 * 13 12 11 40 40 H 1.09003 * 109.42115 * 173.94929 * 13 12 11 41 41 H 1.09000 * 109.46818 * 54.31137 * 15 14 13 42 42 H 1.09008 * 109.46778 * 174.29973 * 15 14 13 43 43 H 0.97005 * 120.00405 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.49249 * 303.14282 * 24 14 13 45 45 H 1.08996 * 109.49240 * 183.06043 * 24 14 13 46 46 H 1.08997 * 109.63008 * 350.89335 * 25 11 9 47 47 H 1.08999 * 109.63519 * 111.47580 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8515 0.5681 0.8409 6 6 3.9953 0.5367 -1.3083 7 6 4.1575 2.5767 0.1251 8 7 5.6123 2.4527 0.2445 9 6 6.3749 3.5571 0.3680 10 8 5.8669 4.6588 0.2877 11 7 7.7007 3.4402 0.5806 12 6 8.5343 4.6279 0.8207 13 6 9.3572 4.3892 2.0966 14 7 10.0978 3.1272 1.9665 15 6 11.0310 2.9466 3.0866 16 6 12.1005 4.0064 3.0254 17 1 12.0881 4.7410 2.2338 18 6 13.0950 4.0382 3.9800 19 7 13.1104 3.1434 4.9435 20 14 14.4204 5.3524 3.9044 21 1 13.7922 6.6949 3.9958 22 1 15.3644 5.1689 5.0360 23 1 15.1586 5.2376 2.6210 24 6 9.1843 1.9825 1.8525 25 6 8.3532 2.1221 0.5726 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.6793 1.1532 -2.1498 32 1 5.0818 0.4503 -1.3085 33 1 3.5522 -0.4551 -1.3979 34 1 3.7612 3.0731 1.0109 35 1 3.9144 3.1646 -0.7601 36 1 6.0266 1.5757 0.2354 37 1 9.2028 4.7833 -0.0261 38 1 7.8968 5.5021 0.9528 39 1 8.6909 4.3328 2.9574 40 1 10.0601 5.2110 2.2336 41 1 10.4888 3.0313 4.0284 42 1 11.4919 1.9610 3.0202 43 1 13.8098 3.1659 5.6154 44 1 8.5203 1.9596 2.7167 45 1 9.7617 1.0590 1.8124 46 1 7.5959 1.3388 0.5406 47 1 9.0046 2.0412 -0.2975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601571775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:27 Heat of formation + Delta-G solvation = -66.736914 kcal Electronic energy + Delta-G solvation = -24714.242233 eV Core-core repulsion = 21125.406085 eV Total energy + Delta-G solvation = -3588.836148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.27771 -38.68287 -37.67027 -36.07807 -34.40212 -32.97484 -32.29718 -30.62681 -28.34622 -27.72403 -26.83671 -25.63452 -24.88341 -23.12262 -22.12546 -20.88310 -20.70835 -19.22021 -17.96342 -17.01044 -16.43152 -16.38607 -16.05036 -15.61679 -15.34407 -14.93622 -14.62778 -14.45869 -14.23079 -13.96891 -13.81771 -13.51751 -13.38274 -13.16100 -12.84222 -12.48405 -12.20746 -12.01432 -11.93594 -11.43654 -11.41904 -11.28554 -11.14634 -11.05877 -10.83135 -10.75271 -10.60372 -10.50872 -10.07322 -9.99551 -9.84639 -9.29036 -9.15301 -8.47776 -8.31578 -7.32379 -6.05862 -4.07705 2.65480 3.31339 3.32624 3.36639 3.37683 3.39633 3.96065 4.39399 4.44485 4.51062 4.63397 4.78764 4.92272 4.93113 5.01385 5.15870 5.21717 5.24155 5.27333 5.28893 5.35593 5.40791 5.47649 5.56443 5.61306 5.66468 5.82579 5.84794 5.95149 5.97274 6.04673 6.19982 6.41248 6.43946 6.56574 6.69209 6.74148 7.05903 7.22162 7.28444 7.74314 7.99871 8.02302 8.12752 8.47926 8.68345 8.99303 9.56788 11.04886 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.034630 B = 0.002441 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.360244 B =11467.305693 C =11823.110144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.069 3.931 4 C -0.103 4.103 5 H 0.086 0.914 6 C -0.144 4.144 7 C 0.146 3.854 8 N -0.748 5.748 9 C 0.708 3.292 10 O -0.597 6.597 11 N -0.625 5.625 12 C 0.133 3.867 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.040 3.960 25 C 0.119 3.881 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.396 0.604 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.024 0.976 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.495 -6.548 -10.864 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.008 4.008 4 C -0.122 4.122 5 H 0.105 0.895 6 C -0.201 4.201 7 C 0.021 3.979 8 N -0.407 5.407 9 C 0.409 3.591 10 O -0.476 6.476 11 N -0.362 5.362 12 C 0.011 3.989 13 C -0.079 4.079 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.089 4.089 25 C -0.005 4.005 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.377 -5.931 -11.168 24.837 hybrid contribution 0.316 0.271 0.916 1.006 sum -21.061 -5.660 -10.252 24.098 Atomic orbital electron populations 1.22745 0.80875 1.02808 1.00060 1.87859 1.19741 1.27776 1.95445 1.22431 0.92878 0.84806 1.00707 1.21327 0.93730 0.96691 1.00483 0.89539 1.21791 1.01084 1.01265 0.95992 1.21024 0.79113 0.95492 1.02234 1.45193 1.06786 1.08246 1.80513 1.15799 0.81167 0.84246 0.77857 1.90885 1.72627 1.25085 1.59008 1.47409 1.05448 1.08742 1.74606 1.21833 0.92222 0.86672 0.98216 1.22457 0.95869 0.95113 0.94425 1.62078 1.16355 0.99899 1.47672 1.19721 0.89830 0.97995 0.85530 1.21105 1.09360 1.13478 1.10896 0.91803 1.24995 0.98068 0.96219 0.95314 1.69943 1.34211 1.35094 1.14518 0.86542 0.81366 0.81874 0.77518 1.20225 1.21394 1.20135 1.22383 0.94896 0.96425 0.95222 1.21767 0.95615 0.83445 0.99692 0.94005 0.94033 0.89580 0.92850 0.92823 0.92528 0.92538 0.91605 0.91660 0.91395 0.76715 0.91145 0.89382 0.95742 0.88486 0.99142 0.95069 0.92830 0.95540 0.90112 0.91318 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.33 10.24 -35.23 -0.36 -3.69 16 3 C 0.07 0.51 5.32 37.16 0.20 0.71 16 4 C -0.10 -0.81 2.66 -90.62 -0.24 -1.05 16 5 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 6 C -0.14 -1.07 8.96 37.16 0.33 -0.74 16 7 C 0.15 1.44 5.07 -4.05 -0.02 1.42 16 8 N -0.75 -8.65 5.20 -65.23 -0.34 -8.99 16 9 C 0.71 11.06 8.31 -86.91 -0.72 10.34 16 10 O -0.60 -11.38 15.83 5.29 0.08 -11.29 16 11 N -0.62 -9.64 3.00 -177.91 -0.53 -10.18 16 12 C 0.13 2.23 6.61 -3.37 -0.02 2.21 16 13 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 14 N -0.53 -11.05 4.62 -235.46 -1.09 -12.14 16 15 C 0.19 4.92 4.72 -4.98 -0.02 4.89 16 16 C -0.51 -13.97 8.41 -34.44 -0.29 -14.26 16 17 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 20 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 25 C 0.12 1.58 6.59 -3.60 -0.02 1.56 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.40 7.18 -51.93 -0.37 0.03 16 33 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.40 3.76 5.15 -40.82 -0.21 3.55 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.49 7.09 -51.93 -0.37 1.12 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.99 6.67 -51.93 -0.35 1.65 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 42 H 0.03 0.84 7.97 -51.92 -0.41 0.42 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 46 H 0.07 0.69 5.63 -51.93 -0.29 0.40 16 47 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -32.64 372.16 -9.00 -41.64 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.25 Total: -1.15 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 0.16 Total: 9.45 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -1.22 Total: -56.92 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.28 Total: -14.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.64 -9.00 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601571775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.094 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds