Wall clock time and date at job start Tue Mar 31 2020 03:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00180 * 2 1 4 4 C 1.52999 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47064 * 305.00479 * 4 3 2 6 6 C 1.53009 * 109.47064 * 64.99598 * 4 3 2 7 7 C 1.52991 * 109.47483 * 185.00005 * 4 3 2 8 8 N 1.46495 * 109.47394 * 175.00043 * 7 4 3 9 9 C 1.34776 * 120.00155 * 180.02562 * 8 7 4 10 10 O 1.21589 * 120.00285 * 354.91448 * 9 8 7 11 11 N 1.34781 * 120.00087 * 174.91664 * 9 8 7 12 12 C 1.47083 * 120.88145 * 184.71405 * 11 9 8 13 13 C 1.53690 * 108.27303 * 128.75601 * 12 11 9 14 14 N 1.46902 * 109.26042 * 54.08332 * 13 12 11 15 15 C 1.46901 * 110.99866 * 172.60229 * 14 13 12 16 16 C 1.50696 * 109.47364 * 294.30055 * 15 14 13 17 17 H 1.07999 * 120.00187 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99520 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00337 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99557 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47235 * 59.99630 * 20 18 16 22 22 H 1.48501 * 109.46791 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46881 * 299.99416 * 20 18 16 24 24 C 1.46895 * 111.26940 * 296.75452 * 14 13 12 25 25 C 1.47076 * 120.88035 * 4.99588 * 11 9 8 26 26 H 1.09004 * 109.46739 * 299.99918 * 1 2 3 27 27 H 1.08996 * 109.46857 * 59.99699 * 1 2 3 28 28 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47256 * 60.00104 * 3 2 1 30 30 H 1.09000 * 109.47388 * 299.99983 * 3 2 1 31 31 H 1.08998 * 109.46461 * 60.00512 * 6 4 3 32 32 H 1.08993 * 109.46630 * 180.02562 * 6 4 3 33 33 H 1.08995 * 109.47296 * 300.00220 * 6 4 3 34 34 H 1.09000 * 109.47108 * 54.99850 * 7 4 3 35 35 H 1.09001 * 109.47230 * 295.00221 * 7 4 3 36 36 H 0.97002 * 119.99927 * 359.97438 * 8 7 4 37 37 H 1.09001 * 109.62702 * 248.52586 * 12 11 9 38 38 H 1.09001 * 109.62840 * 9.10560 * 12 11 9 39 39 H 1.09004 * 109.65112 * 294.07654 * 13 12 11 40 40 H 1.09003 * 109.42115 * 173.94929 * 13 12 11 41 41 H 1.09000 * 109.46818 * 54.31137 * 15 14 13 42 42 H 1.09008 * 109.46778 * 174.29973 * 15 14 13 43 43 H 0.97005 * 120.00405 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.49249 * 303.14282 * 24 14 13 45 45 H 1.08996 * 109.49240 * 183.06043 * 24 14 13 46 46 H 1.08997 * 109.63008 * 350.89335 * 25 11 9 47 47 H 1.08999 * 109.63519 * 111.47580 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8515 0.5681 0.8409 6 6 3.9953 0.5367 -1.3083 7 6 4.1575 2.5767 0.1251 8 7 5.6123 2.4527 0.2445 9 6 6.3749 3.5571 0.3680 10 8 5.8669 4.6588 0.2877 11 7 7.7007 3.4402 0.5806 12 6 8.5343 4.6279 0.8207 13 6 9.3572 4.3892 2.0966 14 7 10.0978 3.1272 1.9665 15 6 11.0310 2.9466 3.0866 16 6 12.1005 4.0064 3.0254 17 1 12.0881 4.7410 2.2338 18 6 13.0950 4.0382 3.9800 19 7 13.1104 3.1434 4.9435 20 14 14.4204 5.3524 3.9044 21 1 13.7922 6.6949 3.9958 22 1 15.3644 5.1689 5.0360 23 1 15.1586 5.2376 2.6210 24 6 9.1843 1.9825 1.8525 25 6 8.3532 2.1221 0.5726 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.6793 1.1532 -2.1498 32 1 5.0818 0.4503 -1.3085 33 1 3.5522 -0.4551 -1.3979 34 1 3.7612 3.0731 1.0109 35 1 3.9144 3.1646 -0.7601 36 1 6.0266 1.5757 0.2354 37 1 9.2028 4.7833 -0.0261 38 1 7.8968 5.5021 0.9528 39 1 8.6909 4.3328 2.9574 40 1 10.0601 5.2110 2.2336 41 1 10.4888 3.0313 4.0284 42 1 11.4919 1.9610 3.0202 43 1 13.8098 3.1659 5.6154 44 1 8.5203 1.9596 2.7167 45 1 9.7617 1.0590 1.8124 46 1 7.5959 1.3388 0.5406 47 1 9.0046 2.0412 -0.2975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601571775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:26 Heat of formation + Delta-G solvation = -90.121996 kcal Electronic energy + Delta-G solvation = -24715.256286 eV Core-core repulsion = 21125.406085 eV Total energy + Delta-G solvation = -3589.850201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48997 -39.45581 -38.94103 -36.96220 -35.98085 -34.46776 -33.73125 -31.96375 -30.01591 -28.24848 -27.78322 -27.02991 -25.79154 -24.47930 -23.88060 -22.17675 -21.59665 -20.43325 -19.14301 -18.48943 -17.76301 -17.11212 -17.04577 -16.70744 -16.63331 -16.07343 -15.94482 -15.77330 -15.36539 -15.31234 -15.14281 -14.98964 -14.45096 -14.04768 -13.94540 -13.58753 -13.53102 -13.23072 -13.06122 -12.76083 -12.56024 -12.47030 -12.36979 -12.29851 -12.19563 -12.06918 -12.00772 -11.75010 -11.66690 -11.39229 -11.17176 -10.60472 -10.60300 -10.26631 -9.59371 -9.03719 -8.19960 -6.29729 1.43176 1.45799 1.53429 1.56103 2.09002 2.41295 2.68063 3.02509 3.12389 3.24220 3.83419 3.83577 3.95608 4.03014 4.06275 4.16765 4.26143 4.43372 4.43647 4.46273 4.48487 4.56757 4.58917 4.65845 4.72351 4.75927 4.85742 4.88079 4.89865 4.95463 5.01441 5.02647 5.17553 5.20235 5.23476 5.37514 5.44269 5.48389 5.64374 5.91211 6.04123 6.22582 6.26322 6.58861 6.85567 6.91423 7.39907 7.49541 8.90833 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.034630 B = 0.002441 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.360244 B =11467.305693 C =11823.110144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.068 3.932 4 C -0.093 4.093 5 H 0.086 0.914 6 C -0.141 4.141 7 C 0.148 3.852 8 N -0.732 5.732 9 C 0.705 3.295 10 O -0.634 6.634 11 N -0.629 5.629 12 C 0.146 3.854 13 C 0.057 3.943 14 N -0.538 5.538 15 C 0.209 3.791 16 C -0.524 4.524 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.267 1.267 24 C 0.037 3.963 25 C 0.127 3.873 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.408 0.592 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.009 0.991 40 H 0.080 0.920 41 H -0.042 1.042 42 H 0.011 0.989 43 H 0.264 0.736 44 H 0.018 0.982 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.162 -6.913 -12.366 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.010 4.010 4 C -0.112 4.112 5 H 0.105 0.895 6 C -0.199 4.199 7 C 0.023 3.977 8 N -0.391 5.391 9 C 0.407 3.593 10 O -0.515 6.515 11 N -0.366 5.366 12 C 0.022 3.978 13 C -0.072 4.072 14 N -0.263 5.263 15 C 0.083 3.917 16 C -0.562 4.562 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.092 4.092 25 C 0.004 3.996 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.027 0.973 40 H 0.098 0.902 41 H -0.025 1.025 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.074 -6.341 -12.695 26.242 hybrid contribution 0.432 0.327 1.394 1.495 sum -21.642 -6.014 -11.301 25.145 Atomic orbital electron populations 1.22910 0.79583 1.03755 1.00795 1.87817 1.21245 1.28267 1.95600 1.22449 0.92472 0.84709 1.01323 1.21213 0.94048 0.95180 1.00777 0.89541 1.21768 1.01347 1.01091 0.95646 1.21091 0.78004 0.96796 1.01780 1.45092 1.07254 1.07694 1.79087 1.15942 0.81140 0.84578 0.77690 1.90862 1.73240 1.26795 1.60649 1.47416 1.05568 1.09007 1.74567 1.21586 0.92045 0.87360 0.96796 1.22374 0.95316 0.94020 0.95535 1.61998 1.17413 1.01798 1.45050 1.19372 0.90195 0.96445 0.85719 1.21442 1.09935 1.13898 1.10940 0.91600 1.25906 1.00480 0.98426 0.94867 1.70071 1.35163 1.36917 1.15305 0.85445 0.78350 0.79102 0.77777 1.19375 1.21076 1.19172 1.22531 0.94590 0.95197 0.96883 1.21849 0.96304 0.83506 0.97928 0.93428 0.93140 0.88622 0.92490 0.92032 0.92450 0.92055 0.91750 0.92362 0.91675 0.75304 0.90233 0.89637 0.97264 0.90171 1.02460 0.97067 0.92723 0.96346 0.89203 0.87375 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.34 10.24 -148.98 -1.53 -7.87 16 3 C 0.07 0.88 5.32 71.98 0.38 1.27 16 4 C -0.09 -1.27 2.66 -10.79 -0.03 -1.30 16 5 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 6 C -0.14 -1.78 8.96 71.99 0.65 -1.13 16 7 C 0.15 2.66 5.07 86.38 0.44 3.10 16 8 N -0.73 -15.28 5.20 -478.55 -2.49 -17.77 16 9 C 0.70 20.89 8.31 179.05 1.49 22.37 16 10 O -0.63 -23.61 15.83 -4.00 -0.06 -23.67 16 11 N -0.63 -18.34 3.00 -835.04 -2.51 -20.84 16 12 C 0.15 4.76 6.61 86.50 0.57 5.33 16 13 C 0.06 2.22 5.47 86.53 0.47 2.70 16 14 N -0.54 -22.32 4.62 -898.87 -4.15 -26.48 16 15 C 0.21 10.90 4.72 85.56 0.40 11.30 16 16 C -0.52 -29.13 8.41 25.60 0.22 -28.92 16 17 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 18 C 0.00 0.07 5.46 84.66 0.46 0.54 16 19 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 20 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 C 0.04 1.20 5.62 86.39 0.49 1.69 16 25 C 0.13 3.05 6.59 86.35 0.57 3.62 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.70 7.18 -2.39 -0.02 0.69 16 33 H 0.06 0.85 7.82 -2.39 -0.02 0.83 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.41 6.44 5.15 -92.71 -0.48 5.96 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.09 2.87 7.09 -2.39 -0.02 2.85 16 39 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.08 3.37 6.67 -2.39 -0.02 3.36 16 41 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 42 H 0.01 0.62 7.97 -2.38 -0.02 0.60 16 43 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 44 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.09 2.75 7.99 -2.39 -0.02 2.73 16 46 H 0.11 1.76 5.63 -2.39 -0.01 1.75 16 47 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -71.02 372.16 -0.61 -71.63 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.46 Total: 12.49 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 7.35 Total: 22.07 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -8.86 Total: -120.55 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.59 Total: -31.54 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.02 -0.61 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601571775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.488 kcal (2) G-P(sol) polarization free energy of solvation -71.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds