Wall clock time and date at job start Tue Mar 31 2020 03:28:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46501 * 109.47468 * 2 1
4 4 C 1.46503 * 119.99738 * 270.00287 * 3 2 1
5 5 C 1.50705 * 109.46998 * 269.99832 * 4 3 2
6 6 H 1.08000 * 119.99825 * 359.97438 * 5 4 3
7 7 C 1.37873 * 119.99713 * 180.02562 * 5 4 3
8 8 N 1.31516 * 120.00345 * 359.97438 * 7 5 4
9 9 Si 1.86801 * 119.99720 * 179.97438 * 7 5 4
10 10 H 1.48505 * 109.47137 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.47262 * 119.99783 * 9 7 5
12 12 H 1.48500 * 109.47284 * 239.99729 * 9 7 5
13 13 C 1.34771 * 120.00159 * 90.00004 * 3 2 1
14 14 O 1.21281 * 120.00074 * 180.02562 * 13 3 2
15 15 C 1.50699 * 119.99891 * 0.02562 * 13 3 2
16 16 N 1.46900 * 109.47005 * 180.02562 * 15 13 3
17 17 C 1.46955 * 111.00508 * 71.96490 * 16 15 13
18 18 C 1.53051 * 109.36871 * 183.18674 * 17 16 15
19 19 N 1.46956 * 109.36677 * 301.60349 * 18 17 16
20 20 C 1.46892 * 111.00140 * 183.18631 * 19 18 17
21 21 C 1.46958 * 110.87947 * 59.31713 * 19 18 17
22 22 C 1.46956 * 111.00023 * 195.76888 * 16 15 13
23 23 H 1.09004 * 109.48905 * 296.77652 * 22 16 15
24 24 C 1.53002 * 109.49020 * 56.83965 * 22 16 15
25 25 O 1.42905 * 109.46822 * 63.17360 * 24 22 16
26 26 H 1.08998 * 109.46788 * 180.02562 * 1 2 3
27 27 H 1.09007 * 109.46317 * 300.00118 * 1 2 3
28 28 H 1.08993 * 109.46828 * 59.99911 * 1 2 3
29 29 H 1.09006 * 109.47025 * 239.99667 * 2 1 3
30 30 H 1.09004 * 109.47311 * 119.99892 * 2 1 3
31 31 H 1.08998 * 109.47141 * 29.99434 * 4 3 2
32 32 H 1.08997 * 109.46950 * 149.99802 * 4 3 2
33 33 H 0.97002 * 119.99995 * 179.97438 * 8 7 5
34 34 H 1.08994 * 109.47328 * 60.00175 * 15 13 3
35 35 H 1.08999 * 109.47323 * 299.99581 * 15 13 3
36 36 H 1.09000 * 109.48864 * 303.16294 * 17 16 15
37 37 H 1.09006 * 109.48792 * 63.19869 * 17 16 15
38 38 H 1.08992 * 109.48864 * 181.63283 * 18 17 16
39 39 H 1.09004 * 109.48583 * 61.57035 * 18 17 16
40 40 H 1.09006 * 109.47142 * 296.19630 * 20 19 18
41 41 H 1.09004 * 109.47149 * 176.19793 * 20 19 18
42 42 H 1.09006 * 109.47230 * 56.19818 * 20 19 18
43 43 H 1.08990 * 109.49261 * 60.65078 * 21 19 18
44 44 H 1.09005 * 109.48776 * 180.69571 * 21 19 18
45 45 H 1.09002 * 109.46987 * 183.16813 * 24 22 16
46 46 H 1.08998 * 109.47316 * 303.17632 * 24 22 16
47 47 H 0.96699 * 113.99649 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2626 2.0718 -1.2688
5 6 3.6859 1.8349 -1.7039
6 1 4.3429 1.2307 -1.0958
7 6 4.1494 2.3903 -2.8776
8 7 3.3494 3.1264 -3.6177
9 14 5.9138 2.0973 -3.4165
10 1 6.6011 1.2410 -2.4166
11 1 5.9217 1.4186 -4.7374
12 1 6.6211 3.3985 -3.5243
13 6 2.2431 2.0165 1.1671
14 8 2.6470 3.1601 1.1671
15 6 1.9924 1.3060 2.4722
16 7 2.3100 2.2062 3.5888
17 6 1.3011 3.2674 3.7131
18 6 1.7092 4.2271 4.8334
19 7 1.8408 3.4794 6.0917
20 6 2.1584 4.3796 7.2081
21 6 2.8499 2.4183 5.9673
22 6 2.4416 1.4586 4.8471
23 1 1.4873 0.9943 5.0957
24 6 3.5106 0.3755 4.6879
25 8 4.7764 0.9891 4.4362
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3632 0.5139 0.8901
28 1 -0.3633 0.5138 -0.8899
29 1 1.8933 -0.5139 -0.8900
30 1 1.8934 -0.5138 0.8900
31 1 1.5818 1.6876 -2.0284
32 1 2.0956 3.1410 -1.1385
33 1 3.6757 3.5174 -4.4433
34 1 2.6229 0.4187 2.5298
35 1 0.9446 1.0115 2.5302
36 1 1.2310 3.8146 2.7730
37 1 0.3337 2.8237 3.9485
38 1 0.9477 4.9986 4.9467
39 1 2.6636 4.6914 4.5847
40 1 3.1314 4.8406 7.0377
41 1 2.1837 3.8108 8.1376
42 1 1.3959 5.1555 7.2776
43 1 3.8171 2.8619 5.7316
44 1 2.9201 1.8713 6.9075
45 1 3.5685 -0.2149 5.6023
46 1 3.2488 -0.2734 3.8522
47 1 5.5029 0.3606 4.3249
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602903477.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:34
Heat of formation + Delta-G solvation = -56.794001 kcal
Electronic energy + Delta-G solvation = -26210.006754 eV
Core-core repulsion = 22621.601763 eV
Total energy + Delta-G solvation = -3588.404991 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 2.92 seconds
Orbital eigenvalues (eV)
-39.93969 -38.52228 -36.64414 -35.39902 -34.79871 -32.74571 -31.46005 -30.07556
-29.64004 -27.33080 -26.41602 -25.55281 -23.51432 -22.97212 -22.28138 -21.51530
-19.61612 -18.28250 -17.35917 -16.81374 -16.30102 -16.04392 -15.68218 -15.23202
-14.88020 -14.76308 -14.44351 -14.29096 -13.74916 -13.71288 -13.61522 -13.29303
-13.14998 -12.75530 -12.50558 -12.09368 -12.04349 -11.94263 -11.79548 -11.52892
-11.46077 -11.17326 -11.15404 -10.87550 -10.73624 -10.70369 -10.53641 -10.43388
-10.07127 -9.90055 -9.54350 -8.79494 -8.40436 -8.38769 -8.01086 -7.55768
-5.99278 -4.03255 3.32999 3.40549 3.44080 3.54789 3.65961 3.87914
4.22558 4.27017 4.50318 4.77248 4.89348 4.98567 5.17666 5.19388
5.25090 5.31152 5.34675 5.35344 5.38532 5.41379 5.48434 5.54998
5.57784 5.66625 5.72541 5.74666 5.79085 5.82067 5.99088 6.03663
6.14525 6.19007 6.25496 6.49247 6.88482 6.94049 7.06994 7.23384
7.26287 7.51584 7.64530 7.69012 7.98362 8.30181 8.53044 8.97942
9.24544 9.61992 11.08778
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.016885 B = 0.004092 C = 0.003941
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.919600 B = 6841.770556 C = 7102.717556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.108 3.892
3 N -0.602 5.602
4 C 0.248 3.752
5 C -0.522 4.522
6 H 0.057 0.943
7 C 0.060 3.940
8 N -0.896 5.896
9 Si 0.897 3.103
10 H -0.274 1.274
11 H -0.284 1.284
12 H -0.283 1.283
13 C 0.509 3.491
14 O -0.521 6.521
15 C 0.033 3.967
16 N -0.504 5.504
17 C 0.059 3.941
18 C 0.059 3.941
19 N -0.550 5.550
20 C 0.027 3.973
21 C 0.068 3.932
22 C 0.088 3.912
23 H 0.058 0.942
24 C 0.080 3.920
25 O -0.551 6.551
26 H 0.058 0.942
27 H 0.048 0.952
28 H 0.061 0.939
29 H 0.081 0.919
30 H 0.060 0.940
31 H 0.030 0.970
32 H 0.042 0.958
33 H 0.262 0.738
34 H 0.098 0.902
35 H 0.054 0.946
36 H 0.096 0.904
37 H 0.033 0.967
38 H 0.077 0.923
39 H 0.048 0.952
40 H 0.026 0.974
41 H 0.065 0.935
42 H 0.066 0.934
43 H 0.056 0.944
44 H 0.073 0.927
45 H 0.048 0.952
46 H 0.050 0.950
47 H 0.373 0.627
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.046 -7.111 19.063 20.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.016 4.016
3 N -0.335 5.335
4 C 0.129 3.871
5 C -0.561 4.561
6 H 0.075 0.925
7 C -0.142 4.142
8 N -0.536 5.536
9 Si 0.725 3.275
10 H -0.198 1.198
11 H -0.211 1.211
12 H -0.209 1.209
13 C 0.294 3.706
14 O -0.396 6.396
15 C -0.098 4.098
16 N -0.230 5.230
17 C -0.068 4.068
18 C -0.069 4.069
19 N -0.274 5.274
20 C -0.122 4.122
21 C -0.061 4.061
22 C -0.021 4.021
23 H 0.075 0.925
24 C 0.001 3.999
25 O -0.355 6.355
26 H 0.077 0.923
27 H 0.067 0.933
28 H 0.080 0.920
29 H 0.100 0.900
30 H 0.078 0.922
31 H 0.048 0.952
32 H 0.060 0.940
33 H 0.071 0.929
34 H 0.116 0.884
35 H 0.072 0.928
36 H 0.114 0.886
37 H 0.051 0.949
38 H 0.095 0.905
39 H 0.066 0.934
40 H 0.045 0.955
41 H 0.084 0.916
42 H 0.085 0.915
43 H 0.074 0.926
44 H 0.091 0.909
45 H 0.066 0.934
46 H 0.068 0.932
47 H 0.219 0.781
Dipole moment (debyes) X Y Z Total
from point charges -5.198 -5.817 18.929 20.473
hybrid contribution 1.242 -0.827 -0.488 1.570
sum -3.956 -6.644 18.441 19.996
Atomic orbital electron populations
1.22226 0.96958 1.01280 1.02249 1.21366 0.93361 0.84525 1.02379
1.48256 1.64412 1.13147 1.07711 1.19223 0.96145 0.93579 0.78132
1.21491 0.96974 1.31580 1.06028 0.92462 1.24930 0.97765 0.94998
0.96460 1.69945 1.35549 1.33673 1.14384 0.86460 0.84817 0.78043
0.78190 1.19823 1.21067 1.20914 1.20090 0.78769 0.87157 0.84561
1.90651 1.44337 1.17874 1.86767 1.22163 1.00015 0.96424 0.91170
1.61662 1.47626 1.11857 1.01813 1.22243 0.91794 0.93267 0.99541
1.22152 1.01086 0.95536 0.88141 1.62212 1.46909 1.13374 1.04918
1.22314 0.99584 0.96320 0.93965 1.22037 0.94235 0.92892 0.96896
1.21751 0.96367 0.93679 0.90268 0.92475 1.22282 0.84853 0.93981
0.98811 1.86670 1.17169 1.36777 1.94854 0.92276 0.93259 0.91997
0.90021 0.92183 0.95198 0.94013 0.92871 0.88424 0.92805 0.88551
0.94892 0.90497 0.93407 0.95534 0.91638 0.91476 0.92565 0.90901
0.93395 0.93224 0.78086
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16
2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16
3 N -0.60 -12.85 2.46 -175.05 -0.43 -13.28 16
4 C 0.25 6.57 5.16 -5.19 -0.03 6.55 16
5 C -0.52 -15.04 9.39 -34.44 -0.32 -15.37 16
6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16
7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16
8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16
9 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16
10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16
11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
13 C 0.51 10.86 7.39 -10.99 -0.08 10.78 16
14 O -0.52 -13.50 14.41 5.56 0.08 -13.42 16
15 C 0.03 0.53 3.85 -4.98 -0.02 0.51 16
16 N -0.50 -8.06 4.08 -227.92 -0.93 -8.99 16
17 C 0.06 0.92 5.27 -3.77 -0.02 0.90 16
18 C 0.06 0.82 5.62 -3.77 -0.02 0.79 16
19 N -0.55 -6.82 4.97 -242.75 -1.21 -8.02 16
20 C 0.03 0.26 9.60 60.06 0.58 0.84 16
21 C 0.07 0.84 4.75 -3.76 -0.02 0.82 16
22 C 0.09 1.12 2.35 -67.65 -0.16 0.96 16
23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
24 C 0.08 0.86 6.37 37.16 0.24 1.10 16
25 O -0.55 -7.15 12.74 -35.23 -0.45 -7.60 16
26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.05 0.63 7.22 -51.92 -0.38 0.26 16
28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16
30 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16
31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16
32 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16
33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
34 H 0.10 1.41 4.70 -51.93 -0.24 1.16 16
35 H 0.05 0.75 7.10 -51.93 -0.37 0.38 16
36 H 0.10 1.75 6.38 -51.93 -0.33 1.42 16
37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
38 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16
39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
40 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16
41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
42 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16
43 H 0.06 0.83 7.55 -51.93 -0.39 0.44 16
44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
46 H 0.05 0.51 5.88 -51.93 -0.31 0.21 16
47 H 0.37 3.18 9.12 45.56 0.42 3.60 16
LS Contribution 367.79 15.07 5.54 5.54
Total: -1.00 -35.42 367.79 -8.62 -44.05
By element:
Atomic # 1 Polarization: 8.74 SS G_CDS: -7.35 Total: 1.38 kcal
Atomic # 6 Polarization: 8.96 SS G_CDS: 0.40 Total: 9.36 kcal
Atomic # 7 Polarization: -54.73 SS G_CDS: -1.83 Total: -56.56 kcal
Atomic # 8 Polarization: -20.65 SS G_CDS: -0.37 Total: -21.02 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -35.42 -8.62 -44.05 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602903477.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.747 kcal
(2) G-P(sol) polarization free energy of solvation -35.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.170 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.794 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.93 seconds