Wall clock time and date at job start Tue Mar 31 2020 03:28:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46501 * 109.47468 * 2 1
4 4 C 1.46503 * 119.99738 * 270.00287 * 3 2 1
5 5 C 1.50705 * 109.46998 * 269.99832 * 4 3 2
6 6 H 1.08000 * 119.99825 * 359.97438 * 5 4 3
7 7 C 1.37873 * 119.99713 * 180.02562 * 5 4 3
8 8 N 1.31516 * 120.00345 * 359.97438 * 7 5 4
9 9 Si 1.86801 * 119.99720 * 179.97438 * 7 5 4
10 10 H 1.48505 * 109.47137 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.47262 * 119.99783 * 9 7 5
12 12 H 1.48500 * 109.47284 * 239.99729 * 9 7 5
13 13 C 1.34771 * 120.00159 * 90.00004 * 3 2 1
14 14 O 1.21281 * 120.00074 * 180.02562 * 13 3 2
15 15 C 1.50699 * 119.99891 * 0.02562 * 13 3 2
16 16 N 1.46900 * 109.47005 * 180.02562 * 15 13 3
17 17 C 1.46955 * 111.00508 * 71.96490 * 16 15 13
18 18 C 1.53051 * 109.36871 * 183.18674 * 17 16 15
19 19 N 1.46956 * 109.36677 * 301.60349 * 18 17 16
20 20 C 1.46892 * 111.00140 * 183.18631 * 19 18 17
21 21 C 1.46958 * 110.87947 * 59.31713 * 19 18 17
22 22 C 1.46956 * 111.00023 * 195.76888 * 16 15 13
23 23 H 1.09004 * 109.48905 * 296.77652 * 22 16 15
24 24 C 1.53002 * 109.49020 * 56.83965 * 22 16 15
25 25 O 1.42905 * 109.46822 * 63.17360 * 24 22 16
26 26 H 1.08998 * 109.46788 * 180.02562 * 1 2 3
27 27 H 1.09007 * 109.46317 * 300.00118 * 1 2 3
28 28 H 1.08993 * 109.46828 * 59.99911 * 1 2 3
29 29 H 1.09006 * 109.47025 * 239.99667 * 2 1 3
30 30 H 1.09004 * 109.47311 * 119.99892 * 2 1 3
31 31 H 1.08998 * 109.47141 * 29.99434 * 4 3 2
32 32 H 1.08997 * 109.46950 * 149.99802 * 4 3 2
33 33 H 0.97002 * 119.99995 * 179.97438 * 8 7 5
34 34 H 1.08994 * 109.47328 * 60.00175 * 15 13 3
35 35 H 1.08999 * 109.47323 * 299.99581 * 15 13 3
36 36 H 1.09000 * 109.48864 * 303.16294 * 17 16 15
37 37 H 1.09006 * 109.48792 * 63.19869 * 17 16 15
38 38 H 1.08992 * 109.48864 * 181.63283 * 18 17 16
39 39 H 1.09004 * 109.48583 * 61.57035 * 18 17 16
40 40 H 1.09006 * 109.47142 * 296.19630 * 20 19 18
41 41 H 1.09004 * 109.47149 * 176.19793 * 20 19 18
42 42 H 1.09006 * 109.47230 * 56.19818 * 20 19 18
43 43 H 1.08990 * 109.49261 * 60.65078 * 21 19 18
44 44 H 1.09005 * 109.48776 * 180.69571 * 21 19 18
45 45 H 1.09002 * 109.46987 * 183.16813 * 24 22 16
46 46 H 1.08998 * 109.47316 * 303.17632 * 24 22 16
47 47 H 0.96699 * 113.99649 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2626 2.0718 -1.2688
5 6 3.6859 1.8349 -1.7039
6 1 4.3429 1.2307 -1.0958
7 6 4.1494 2.3903 -2.8776
8 7 3.3494 3.1264 -3.6177
9 14 5.9138 2.0973 -3.4165
10 1 6.6011 1.2410 -2.4166
11 1 5.9217 1.4186 -4.7374
12 1 6.6211 3.3985 -3.5243
13 6 2.2431 2.0165 1.1671
14 8 2.6470 3.1601 1.1671
15 6 1.9924 1.3060 2.4722
16 7 2.3100 2.2062 3.5888
17 6 1.3011 3.2674 3.7131
18 6 1.7092 4.2271 4.8334
19 7 1.8408 3.4794 6.0917
20 6 2.1584 4.3796 7.2081
21 6 2.8499 2.4183 5.9673
22 6 2.4416 1.4586 4.8471
23 1 1.4873 0.9943 5.0957
24 6 3.5106 0.3755 4.6879
25 8 4.7764 0.9891 4.4362
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3632 0.5139 0.8901
28 1 -0.3633 0.5138 -0.8899
29 1 1.8933 -0.5139 -0.8900
30 1 1.8934 -0.5138 0.8900
31 1 1.5818 1.6876 -2.0284
32 1 2.0956 3.1410 -1.1385
33 1 3.6757 3.5174 -4.4433
34 1 2.6229 0.4187 2.5298
35 1 0.9446 1.0115 2.5302
36 1 1.2310 3.8146 2.7730
37 1 0.3337 2.8237 3.9485
38 1 0.9477 4.9986 4.9467
39 1 2.6636 4.6914 4.5847
40 1 3.1314 4.8406 7.0377
41 1 2.1837 3.8108 8.1376
42 1 1.3959 5.1555 7.2776
43 1 3.8171 2.8619 5.7316
44 1 2.9201 1.8713 6.9075
45 1 3.5685 -0.2149 5.6023
46 1 3.2488 -0.2734 3.8522
47 1 5.5029 0.3606 4.3249
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602903477.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:31
Heat of formation + Delta-G solvation = -86.690277 kcal
Electronic energy + Delta-G solvation = -26211.303153 eV
Core-core repulsion = 22621.601763 eV
Total energy + Delta-G solvation = -3589.701391 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 2.40 seconds
Orbital eigenvalues (eV)
-41.21113 -39.95115 -37.55369 -36.95425 -36.06365 -34.87945 -32.48706 -31.65406
-30.85632 -29.05085 -27.31359 -26.97931 -24.91667 -24.42652 -23.75565 -22.57022
-20.66377 -19.88097 -18.62941 -18.26991 -18.06619 -17.37011 -16.94619 -16.73595
-16.19169 -16.00677 -15.73240 -15.72023 -14.98904 -14.88759 -14.63539 -14.62250
-14.36619 -14.24585 -13.93281 -13.57636 -13.32059 -13.13517 -13.07922 -12.92045
-12.76689 -12.68202 -12.50505 -12.48203 -12.28933 -12.15473 -11.93169 -11.80551
-11.66200 -11.43659 -10.75897 -10.64409 -10.45883 -9.44226 -9.38734 -9.14337
-8.21550 -6.36108 1.34957 1.38163 1.49770 1.91911 2.23831 2.40754
2.90326 2.95642 3.07669 3.46332 3.71052 3.85669 3.94109 4.02653
4.17315 4.21031 4.23695 4.35460 4.39222 4.46046 4.46718 4.53855
4.60852 4.63921 4.64888 4.76438 4.79831 4.89348 4.92904 4.97710
4.98630 5.00903 5.06308 5.12849 5.23547 5.38983 5.60075 5.85051
5.91664 5.92988 6.08890 6.12176 6.19238 6.72800 6.87770 7.02261
7.30602 7.59896 8.85483
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.016885 B = 0.004092 C = 0.003941
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.919600 B = 6841.770556 C = 7102.717556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.100 3.900
3 N -0.607 5.607
4 C 0.265 3.735
5 C -0.539 4.539
6 H 0.051 0.949
7 C 0.006 3.994
8 N -0.930 5.930
9 Si 0.967 3.033
10 H -0.267 1.267
11 H -0.267 1.267
12 H -0.284 1.284
13 C 0.498 3.502
14 O -0.580 6.580
15 C 0.051 3.949
16 N -0.533 5.533
17 C 0.064 3.936
18 C 0.065 3.935
19 N -0.547 5.547
20 C 0.025 3.975
21 C 0.070 3.930
22 C 0.085 3.915
23 H 0.077 0.923
24 C 0.077 3.923
25 O -0.583 6.583
26 H 0.097 0.903
27 H 0.057 0.943
28 H 0.037 0.963
29 H 0.072 0.928
30 H 0.098 0.902
31 H 0.021 0.979
32 H -0.008 1.008
33 H 0.266 0.734
34 H 0.120 0.880
35 H 0.084 0.916
36 H 0.057 0.943
37 H 0.050 0.950
38 H 0.091 0.909
39 H 0.016 0.984
40 H 0.017 0.983
41 H 0.086 0.914
42 H 0.077 0.923
43 H 0.025 0.975
44 H 0.100 0.900
45 H 0.083 0.917
46 H 0.058 0.942
47 H 0.389 0.611
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.152 -9.933 21.212 23.983
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.022 4.022
3 N -0.339 5.339
4 C 0.144 3.856
5 C -0.577 4.577
6 H 0.070 0.930
7 C -0.192 4.192
8 N -0.570 5.570
9 Si 0.792 3.208
10 H -0.191 1.191
11 H -0.192 1.192
12 H -0.210 1.210
13 C 0.286 3.714
14 O -0.460 6.460
15 C -0.080 4.080
16 N -0.259 5.259
17 C -0.064 4.064
18 C -0.064 4.064
19 N -0.272 5.272
20 C -0.123 4.123
21 C -0.058 4.058
22 C -0.023 4.023
23 H 0.095 0.905
24 C -0.001 4.001
25 O -0.390 6.390
26 H 0.115 0.885
27 H 0.076 0.924
28 H 0.056 0.944
29 H 0.090 0.910
30 H 0.116 0.884
31 H 0.039 0.961
32 H 0.010 0.990
33 H 0.075 0.925
34 H 0.138 0.862
35 H 0.101 0.899
36 H 0.076 0.924
37 H 0.068 0.932
38 H 0.110 0.890
39 H 0.034 0.966
40 H 0.036 0.964
41 H 0.105 0.895
42 H 0.096 0.904
43 H 0.044 0.956
44 H 0.118 0.882
45 H 0.101 0.899
46 H 0.076 0.924
47 H 0.238 0.762
Dipole moment (debyes) X Y Z Total
from point charges -5.322 -8.704 21.103 23.440
hybrid contribution 1.252 0.075 -1.126 1.685
sum -4.071 -8.629 19.977 22.139
Atomic orbital electron populations
1.22149 0.94647 1.03501 1.01499 1.21723 0.95235 0.81452 1.03774
1.48288 1.64424 1.15124 1.06104 1.18635 0.95161 0.91323 0.80497
1.21744 0.97920 1.31760 1.06323 0.93034 1.25859 1.02366 0.94514
0.96480 1.70064 1.37674 1.34363 1.14861 0.85375 0.79075 0.77957
0.78429 1.19113 1.19213 1.20959 1.21185 0.77284 0.86712 0.86208
1.90621 1.46946 1.20658 1.87755 1.22028 1.02104 0.95965 0.87865
1.61563 1.48194 1.12711 1.03393 1.22092 0.92715 0.93442 0.98187
1.22049 0.99873 0.95619 0.88828 1.62282 1.46880 1.13589 1.04416
1.22411 0.99448 0.96589 0.93810 1.22069 0.92646 0.92966 0.98147
1.21949 0.98031 0.93933 0.88392 0.90492 1.22423 0.83486 0.93358
1.00800 1.86631 1.18615 1.38669 1.95105 0.88453 0.92422 0.94384
0.90978 0.88394 0.96133 0.98965 0.92482 0.86201 0.89872 0.92424
0.93225 0.89033 0.96560 0.96432 0.89538 0.90428 0.95623 0.88150
0.89915 0.92434 0.76199
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16
2 C 0.10 3.07 5.93 86.38 0.51 3.58 16
3 N -0.61 -26.43 2.46 -826.14 -2.03 -28.46 16
4 C 0.27 14.80 5.16 85.63 0.44 15.24 16
5 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16
6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16
7 C 0.01 0.38 5.46 84.65 0.46 0.84 16
8 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16
9 Si 0.97 46.20 29.54 68.60 2.03 48.22 16
10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16
11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16
13 C 0.50 21.72 7.39 87.66 0.65 22.36 16
14 O -0.58 -31.94 14.41 -3.03 -0.04 -31.98 16
15 C 0.05 1.53 3.85 85.56 0.33 1.86 16
16 N -0.53 -16.58 4.08 -875.01 -3.57 -20.15 16
17 C 0.06 1.98 5.27 86.31 0.45 2.44 16
18 C 0.06 1.81 5.62 86.31 0.49 2.30 16
19 N -0.55 -12.68 4.97 -921.94 -4.58 -17.26 16
20 C 0.03 0.46 9.60 127.69 1.23 1.68 16
21 C 0.07 1.60 4.75 86.31 0.41 2.01 16
22 C 0.08 1.92 2.35 44.92 0.11 2.03 16
23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
24 C 0.08 1.42 6.37 71.98 0.46 1.88 16
25 O -0.58 -14.18 12.74 -148.98 -1.90 -16.08 16
26 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16
27 H 0.06 1.33 7.22 -2.38 -0.02 1.31 16
28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
29 H 0.07 2.34 8.07 -2.38 -0.02 2.32 16
30 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16
31 H 0.02 1.16 8.07 -2.39 -0.02 1.15 16
32 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16
33 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16
34 H 0.12 3.06 4.70 -2.39 -0.01 3.05 16
35 H 0.08 2.03 7.10 -2.39 -0.02 2.01 16
36 H 0.06 2.23 6.38 -2.39 -0.02 2.21 16
37 H 0.05 1.34 8.14 -2.38 -0.02 1.33 16
38 H 0.09 2.22 8.13 -2.39 -0.02 2.20 16
39 H 0.02 0.54 8.14 -2.39 -0.02 0.53 16
40 H 0.02 0.35 8.14 -2.38 -0.02 0.33 16
41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
42 H 0.08 1.24 8.13 -2.38 -0.02 1.22 16
43 H 0.03 0.75 7.55 -2.39 -0.02 0.73 16
44 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16
45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
46 H 0.06 0.95 5.88 -2.39 -0.01 0.94 16
47 H 0.39 5.98 9.12 -74.06 -0.68 5.30 16
Total: -1.00 -82.47 367.79 -3.02 -85.49
By element:
Atomic # 1 Polarization: 16.13 SS G_CDS: 0.27 Total: 16.40 kcal
Atomic # 6 Polarization: 14.69 SS G_CDS: 6.51 Total: 21.20 kcal
Atomic # 7 Polarization: -113.37 SS G_CDS: -9.89 Total: -123.26 kcal
Atomic # 8 Polarization: -46.12 SS G_CDS: -1.94 Total: -48.06 kcal
Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal
Total: -82.47 -3.02 -85.49 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602903477.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.197 kcal
(2) G-P(sol) polarization free energy of solvation -82.472 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.493 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.690 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.40 seconds