Wall clock time and date at job start Tue Mar 31 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99694 * 2 1 4 4 C 1.52998 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47548 * 55.00067 * 4 3 2 6 6 C 1.53000 * 109.47105 * 294.99294 * 4 3 2 7 7 C 1.53005 * 109.46992 * 174.99604 * 4 3 2 8 8 N 1.46499 * 109.47214 * 184.99709 * 7 4 3 9 9 C 1.34771 * 119.99937 * 180.02562 * 8 7 4 10 10 O 1.21589 * 120.00484 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99953 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99934 * 179.97438 * 11 9 8 13 13 C 1.53350 * 109.40686 * 275.12100 * 12 11 9 14 14 C 1.53198 * 109.14641 * 178.68385 * 13 12 11 15 15 N 1.46925 * 108.89335 * 54.57862 * 14 13 12 16 16 C 1.36931 * 120.63201 * 126.29969 * 15 14 13 17 17 H 1.08005 * 119.99889 * 331.83485 * 16 15 14 18 18 C 1.38813 * 120.00220 * 151.82683 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08678 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08567 * 18 16 15 21 21 H 1.48496 * 109.47191 * 90.00149 * 20 18 16 22 22 H 1.48501 * 109.46981 * 210.00196 * 20 18 16 23 23 H 1.48500 * 109.46794 * 329.99854 * 20 18 16 24 24 C 1.46925 * 118.73856 * 306.31536 * 15 14 13 25 25 C 1.53044 * 109.45702 * 155.00046 * 12 11 9 26 26 H 1.09000 * 109.47063 * 300.00252 * 1 2 3 27 27 H 1.08997 * 109.47373 * 60.00548 * 1 2 3 28 28 H 1.09000 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47260 * 59.99936 * 3 2 1 30 30 H 1.09005 * 109.46460 * 299.99575 * 3 2 1 31 31 H 1.09006 * 109.46907 * 60.00361 * 6 4 3 32 32 H 1.08996 * 109.47074 * 180.02562 * 6 4 3 33 33 H 1.08995 * 109.47548 * 300.00773 * 6 4 3 34 34 H 1.09004 * 109.46746 * 64.99891 * 7 4 3 35 35 H 1.08998 * 109.47011 * 304.99998 * 7 4 3 36 36 H 0.97000 * 119.99764 * 359.97438 * 8 7 4 37 37 H 0.97000 * 120.00504 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.45768 * 35.03125 * 12 11 9 39 39 H 1.08996 * 109.68537 * 58.72149 * 13 12 11 40 40 H 1.09000 * 109.47180 * 298.52066 * 13 12 11 41 41 H 1.08997 * 109.58387 * 294.71773 * 14 13 12 42 42 H 1.08993 * 109.58533 * 174.43928 * 14 13 12 43 43 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.58495 * 173.39541 * 24 15 14 45 45 H 1.09000 * 109.58924 * 293.68296 * 24 15 14 46 46 H 1.08996 * 109.49900 * 61.42129 * 25 12 11 47 47 H 1.08999 * 109.52516 * 301.33969 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5687 -0.8426 6 6 3.9962 0.5367 1.3065 7 6 4.1572 2.5771 -0.1265 8 7 5.6120 2.4532 -0.2471 9 6 6.3744 3.5576 -0.3699 10 8 5.8550 4.6569 -0.3810 11 7 7.7127 3.4436 -0.4814 12 6 8.5416 4.6442 -0.6154 13 6 8.5983 5.0622 -2.0898 14 6 9.4390 6.3364 -2.2188 15 7 10.7534 6.1034 -1.6049 16 6 11.9039 6.3381 -2.3093 17 1 11.9055 6.2500 -3.3858 18 6 13.0682 6.6893 -1.6400 19 7 13.0087 7.1197 -0.3976 20 14 14.7194 6.5511 -2.5026 21 1 15.0257 7.8296 -3.1930 22 1 15.7780 6.2629 -1.5019 23 1 14.6669 5.4508 -3.4985 24 6 10.8098 5.6135 -0.2209 25 6 9.9555 4.3465 -0.1112 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8465 0.8899 30 1 1.6885 1.8463 -0.8901 31 1 3.5532 -0.4553 1.3961 32 1 5.0828 0.4510 1.3062 33 1 3.6808 1.1528 2.1485 34 1 3.9148 3.1646 0.7591 35 1 3.7602 3.0736 -1.0118 36 1 6.0264 1.5762 -0.2378 37 1 8.1272 2.5667 -0.4729 38 1 8.1084 5.4522 -0.0258 39 1 7.5898 5.2532 -2.4564 40 1 9.0543 4.2646 -2.6763 41 1 8.9375 7.1583 -1.7078 42 1 9.5666 6.5848 -3.2723 43 1 13.8223 7.3648 0.0702 44 1 11.8417 5.3823 0.0431 45 1 10.4224 6.3774 0.4533 46 1 10.3985 3.5555 -0.7163 47 1 9.9112 4.0266 0.9299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609337046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:32 Heat of formation + Delta-G solvation = -67.842222 kcal Electronic energy + Delta-G solvation = -24523.240564 eV Core-core repulsion = 20934.356486 eV Total energy + Delta-G solvation = -3588.884078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.00900 -38.65744 -37.50425 -36.04364 -34.30160 -33.01341 -31.85358 -30.06454 -29.29335 -27.75017 -26.90714 -25.43541 -24.53468 -22.25232 -21.91061 -20.87229 -20.48337 -19.38809 -18.06842 -17.14229 -16.66650 -16.43439 -15.99242 -15.47581 -15.39081 -14.80491 -14.51870 -14.23782 -14.16935 -13.68884 -13.51351 -13.34324 -13.03911 -12.92960 -12.74028 -12.46755 -12.29611 -11.98148 -11.46520 -11.43023 -11.39051 -11.09799 -11.08763 -10.82127 -10.69020 -10.46860 -10.24295 -10.08855 -10.01842 -9.98969 -9.72192 -9.50905 -9.14290 -8.56166 -8.40636 -6.65596 -5.77650 -3.19457 2.73224 3.38265 3.40743 3.42269 3.45391 3.47723 4.34881 4.43552 4.51243 4.55601 4.63430 4.90983 4.91736 5.00589 5.15846 5.22822 5.25769 5.36747 5.42139 5.46504 5.54162 5.56952 5.60681 5.65100 5.84081 5.93862 5.95659 6.12311 6.32959 6.39922 6.43598 6.53709 6.61440 6.64964 6.72201 6.84020 6.94505 7.02757 7.15094 7.35041 7.64669 7.81200 8.18579 8.46877 8.79620 9.22964 9.86381 10.43712 11.31351 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.048720 B = 0.002240 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.579687 B =12495.342207 C =12622.134999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.068 3.932 4 C -0.102 4.102 5 H 0.086 0.914 6 C -0.144 4.144 7 C 0.147 3.853 8 N -0.750 5.750 9 C 0.702 3.298 10 O -0.592 6.592 11 N -0.739 5.739 12 C 0.169 3.831 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.174 3.826 25 C -0.146 4.146 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.394 0.606 37 H 0.391 0.609 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.091 0.909 45 H 0.021 0.979 46 H 0.059 0.941 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.583 -15.433 2.658 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.009 4.009 4 C -0.121 4.121 5 H 0.104 0.896 6 C -0.202 4.202 7 C 0.022 3.978 8 N -0.407 5.407 9 C 0.401 3.599 10 O -0.470 6.470 11 N -0.393 5.393 12 C 0.065 3.935 13 C -0.180 4.180 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.186 4.186 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.228 0.772 37 H 0.223 0.777 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.805 -14.480 2.751 25.496 hybrid contribution 0.983 -0.680 -0.381 1.254 sum -19.822 -15.160 2.370 25.067 Atomic orbital electron populations 1.22745 0.80867 1.02788 1.00098 1.87854 1.19756 1.27822 1.95456 1.22446 0.92921 0.84774 1.00761 1.21323 0.93698 0.96724 1.00387 0.89609 1.21793 1.01078 1.01222 0.96065 1.21013 0.79169 0.95373 1.02267 1.45067 1.06824 1.08030 1.80804 1.15997 0.81759 0.84266 0.77829 1.90920 1.72723 1.25123 1.58184 1.45544 1.04655 1.10630 1.78431 1.20969 0.89899 0.85618 0.97012 1.22444 0.99596 1.00270 0.95645 1.20877 0.86772 0.93041 0.97290 1.44085 1.00450 1.75243 1.11767 1.19176 0.87137 1.40594 0.91142 0.91704 1.25054 0.98876 0.98974 0.96835 1.70026 1.27042 1.46172 1.11550 0.86307 0.83936 0.77951 0.78643 1.21404 1.21590 1.20533 1.20745 0.99211 0.89637 0.85653 1.22535 0.94355 1.02385 0.99301 0.94010 0.93989 0.89601 0.92786 0.92833 0.91693 0.92501 0.92525 0.91483 0.91581 0.77203 0.77652 0.90106 0.92695 0.92493 0.96173 0.92649 0.93628 0.89067 0.96059 0.92247 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.23 10.24 -35.23 -0.36 -3.59 16 3 C 0.07 0.49 5.32 37.16 0.20 0.69 16 4 C -0.10 -0.76 2.66 -90.62 -0.24 -1.00 16 5 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 6 C -0.14 -1.03 8.96 37.16 0.33 -0.69 16 7 C 0.15 1.40 5.06 -4.04 -0.02 1.38 16 8 N -0.75 -8.02 5.29 -65.22 -0.34 -8.36 16 9 C 0.70 10.64 8.53 -86.92 -0.74 9.90 16 10 O -0.59 -11.57 16.01 5.29 0.08 -11.49 16 11 N -0.74 -10.62 5.08 -58.47 -0.30 -10.92 16 12 C 0.17 3.01 2.42 -67.72 -0.16 2.85 16 13 C -0.14 -2.61 5.68 -26.45 -0.15 -2.77 16 14 C 0.15 3.23 6.50 -3.71 -0.02 3.21 16 15 N -0.59 -14.95 2.99 -172.32 -0.52 -15.47 16 16 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 17 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 18 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -26.18 11.20 55.49 0.62 -25.56 16 20 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 25 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 32 H 0.06 0.38 7.18 -51.93 -0.37 0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.39 3.14 7.67 -40.82 -0.31 2.83 16 37 H 0.39 4.45 8.62 -40.82 -0.35 4.10 16 38 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 1.19 7.93 -51.93 -0.41 0.77 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -32.81 374.40 -8.75 -41.56 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.45 Total: 2.59 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -0.10 Total: 9.01 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.54 Total: -60.30 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.28 Total: -15.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.81 -8.75 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.282 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds