Wall clock time and date at job start Tue Mar 31 2020 03:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47399 * 2 1 4 4 C 1.52999 * 109.47454 * 120.00971 * 2 1 3 5 5 N 1.46907 * 109.46497 * 296.25513 * 4 2 1 6 6 C 1.47013 * 111.00101 * 288.11138 * 5 4 2 7 7 C 1.53096 * 109.25780 * 177.61179 * 6 5 4 8 8 O 1.43018 * 109.25836 * 56.84627 * 7 6 5 9 9 C 1.43010 * 113.73926 * 301.33282 * 8 7 6 10 10 C 1.47022 * 110.99320 * 164.47791 * 5 4 2 11 11 N 1.46909 * 109.46480 * 240.00581 * 2 1 3 12 12 C 1.46897 * 110.99460 * 184.41475 * 11 2 1 13 13 C 1.46897 * 111.00055 * 60.46390 * 11 2 1 14 14 C 1.50697 * 109.47238 * 190.00160 * 13 11 2 15 15 O 1.21281 * 119.99568 * 359.97438 * 14 13 11 16 16 N 1.34771 * 120.00432 * 180.02562 * 14 13 11 17 17 C 1.46498 * 120.00258 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47173 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00332 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00166 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00101 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99756 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46786 * 90.00499 * 22 20 18 24 24 H 1.48501 * 109.46899 * 210.00493 * 22 20 18 25 25 H 1.48494 * 109.47215 * 330.00395 * 22 20 18 26 26 H 1.09007 * 109.46483 * 299.99272 * 1 2 3 27 27 H 1.09000 * 109.47121 * 59.99249 * 1 2 3 28 28 H 1.08998 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47285 * 56.25223 * 4 2 1 30 30 H 1.08996 * 109.47309 * 176.25924 * 4 2 1 31 31 H 1.08998 * 109.50637 * 297.54634 * 6 5 4 32 32 H 1.08999 * 109.50559 * 57.67435 * 6 5 4 33 33 H 1.08996 * 109.50553 * 296.91502 * 7 6 5 34 34 H 1.08994 * 109.54217 * 176.80416 * 7 6 5 35 35 H 1.09001 * 109.50730 * 298.73058 * 9 8 7 36 36 H 1.08999 * 109.53827 * 178.62670 * 9 8 7 37 37 H 1.08998 * 109.50536 * 302.32603 * 10 5 4 38 38 H 1.08994 * 109.50870 * 62.46009 * 10 5 4 39 39 H 1.09001 * 109.47255 * 67.25118 * 12 11 2 40 40 H 1.09003 * 109.47727 * 307.25000 * 12 11 2 41 41 H 1.09001 * 109.46823 * 187.25095 * 12 11 2 42 42 H 1.09008 * 109.46819 * 309.99586 * 13 11 2 43 43 H 1.09000 * 109.47492 * 69.99341 * 13 11 2 44 44 H 0.97005 * 119.99863 * 359.97438 * 16 14 13 45 45 H 1.09008 * 109.46921 * 299.99209 * 17 16 14 46 46 H 1.08996 * 109.47383 * 59.99792 * 17 16 14 47 47 H 0.97002 * 119.99665 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.6257 0.0212 2.4469 6 6 2.3866 1.2720 2.5809 7 6 1.8828 2.0408 3.8052 8 8 1.9978 1.2103 4.9639 9 6 1.2685 -0.0161 4.8678 10 6 1.7660 -0.8059 3.6543 11 7 2.0196 -0.6924 -1.1996 12 6 3.4842 -0.8042 -1.1820 13 6 1.5576 -0.0198 -2.4211 14 6 1.8655 -0.8833 -3.6172 15 8 2.4161 -1.9534 -3.4668 16 7 1.5301 -0.4659 -4.8540 17 6 1.8299 -1.3051 -6.0167 18 6 1.3559 -0.6151 -7.2698 19 1 0.8785 0.3516 -7.2065 20 6 1.5306 -1.2185 -8.4972 21 7 1.1164 -0.6166 -9.5907 22 14 2.3556 -2.8909 -8.6069 23 1 1.3272 -3.9575 -8.5070 24 1 3.0660 -3.0081 -9.9057 25 1 3.3293 -3.0363 -7.4952 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6230 -1.7279 1.2832 30 1 3.1280 -0.7798 1.2162 31 1 3.4449 1.0426 2.7052 32 1 2.2479 1.8799 1.6869 33 1 0.8388 2.3168 3.6574 34 1 2.4815 2.9412 3.9420 35 1 0.2065 0.2001 4.7509 36 1 1.4228 -0.6039 5.7727 37 1 1.1743 -1.7145 3.5438 38 1 2.8144 -1.0684 3.7958 39 1 3.7879 -1.4733 -0.3769 40 1 3.9219 0.1809 -1.0203 41 1 3.8296 -1.2030 -2.1358 42 1 0.4819 0.1459 -2.3599 43 1 2.0675 0.9381 -2.5235 44 1 1.0900 0.3902 -4.9742 45 1 2.9057 -1.4707 -6.0775 46 1 1.3200 -2.2630 -5.9147 47 1 1.2397 -1.0409 -10.4543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789342421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:25 Heat of formation + Delta-G solvation = -61.071682 kcal Electronic energy + Delta-G solvation = -24835.570991 eV Core-core repulsion = 21246.980506 eV Total energy + Delta-G solvation = -3588.590485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.13142 -39.31314 -37.70616 -35.63778 -34.24061 -32.36484 -31.69851 -31.34753 -29.38551 -28.29141 -26.98610 -24.89670 -24.42844 -24.08386 -21.90697 -20.89083 -19.97708 -19.72666 -17.35957 -17.20405 -16.50260 -16.24563 -15.81315 -15.55323 -15.43283 -15.38929 -15.12712 -14.63764 -14.47432 -14.21350 -13.67493 -13.54971 -13.45770 -12.93748 -12.67180 -12.52385 -12.36430 -12.27996 -12.13472 -11.85201 -11.76965 -11.69665 -11.28127 -11.10936 -11.01637 -10.86024 -10.84039 -10.71706 -10.04308 -9.97573 -9.49985 -9.14829 -8.78144 -8.73945 -8.28463 -8.10429 -6.22046 -4.24212 3.17257 3.24421 3.27875 3.33330 3.41651 3.48057 3.78632 4.27634 4.33394 4.44586 4.54784 4.59483 4.74839 4.76340 4.89373 4.93448 5.07846 5.13178 5.18810 5.19589 5.26989 5.31684 5.39772 5.43553 5.45238 5.48112 5.51624 5.60455 5.62963 5.63985 5.83846 5.92796 6.17936 6.23806 6.55308 6.56512 6.74339 6.78358 6.96783 7.07269 7.10276 7.24829 7.39773 8.14628 8.52506 8.75390 8.96804 9.38330 10.89879 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.043877 B = 0.002376 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.995731 B =11779.363934 C =12007.581091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.038 0.962 4 C 0.061 3.939 5 N -0.533 5.533 6 C 0.014 3.986 7 C 0.064 3.936 8 O -0.388 6.388 9 C 0.064 3.936 10 C 0.019 3.981 11 N -0.518 5.518 12 C 0.019 3.981 13 C 0.033 3.967 14 C 0.501 3.499 15 O -0.541 6.541 16 N -0.708 5.708 17 C 0.222 3.778 18 C -0.543 4.543 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.878 3.122 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.261 1.261 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.016 0.984 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.395 0.605 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 4.657 27.541 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.056 0.944 4 C -0.066 4.066 5 N -0.259 5.259 6 C -0.114 4.114 7 C -0.013 4.013 8 O -0.306 6.306 9 C -0.013 4.013 10 C -0.109 4.109 11 N -0.243 5.243 12 C -0.128 4.128 13 C -0.098 4.098 14 C 0.285 3.715 15 O -0.420 6.420 16 N -0.358 5.358 17 C 0.100 3.900 18 C -0.581 4.581 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.185 1.185 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.229 0.771 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.313 3.555 27.530 27.760 hybrid contribution 1.227 0.109 -0.606 1.372 sum 1.540 3.664 26.924 27.216 Atomic orbital electron populations 1.21809 0.93459 1.02720 1.01615 1.21584 0.96633 0.94931 0.88955 0.94378 1.22186 0.98259 0.97821 0.88366 1.62097 1.55944 1.05357 1.02467 1.22852 0.96115 0.92632 0.99785 1.22660 1.01366 0.93005 0.84227 1.87984 1.72269 1.31277 1.39076 1.22666 0.95907 0.85254 0.97468 1.22781 1.00591 0.97077 0.90494 1.61607 1.11405 1.51124 1.00172 1.22558 0.86628 0.99115 1.04546 1.22054 1.02700 0.95463 0.89595 1.20347 0.79655 0.87154 0.84295 1.90622 1.42622 1.22969 1.85743 1.46175 1.60014 1.23282 1.06294 1.19461 0.96272 0.91042 0.83216 1.21100 1.40973 1.06762 0.89292 0.90274 1.24806 0.94700 0.97823 0.95357 1.69882 1.46127 1.38750 0.98231 0.86805 0.80546 0.84255 0.78003 1.19830 1.20936 1.18537 0.91198 0.92923 0.91918 0.89600 0.94110 0.93980 0.89485 0.92158 0.88525 0.92157 0.88495 0.89379 0.93966 0.91618 0.96531 0.89237 0.87696 0.92416 0.77131 0.95848 0.96171 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.88 37.16 0.33 -1.04 16 2 C 0.09 0.92 2.12 -67.71 -0.14 0.77 16 3 H 0.04 0.39 6.59 -51.93 -0.34 0.05 16 4 C 0.06 0.59 4.12 -3.82 -0.02 0.57 16 5 N -0.53 -4.51 4.08 -234.30 -0.96 -5.47 16 6 C 0.01 0.11 5.47 -3.71 -0.02 0.09 16 7 C 0.06 0.47 7.01 37.21 0.26 0.73 16 8 O -0.39 -3.51 10.83 -35.23 -0.38 -3.89 16 9 C 0.06 0.45 7.01 37.21 0.26 0.71 16 10 C 0.02 0.14 5.62 -3.71 -0.02 0.12 16 11 N -0.52 -6.95 4.37 -236.32 -1.03 -7.98 16 12 C 0.02 0.26 8.53 60.06 0.51 0.77 16 13 C 0.03 0.46 5.27 -4.98 -0.03 0.43 16 14 C 0.50 9.43 7.45 -10.99 -0.08 9.35 16 15 O -0.54 -12.15 14.41 5.56 0.08 -12.07 16 16 N -0.71 -14.20 5.55 -61.47 -0.34 -14.54 16 17 C 0.22 5.46 4.50 -5.19 -0.02 5.44 16 18 C -0.54 -14.87 9.83 -34.44 -0.34 -15.21 16 19 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 21 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 22 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 26 H 0.07 0.64 7.71 -51.92 -0.40 0.24 16 27 H 0.05 0.51 6.21 -51.93 -0.32 0.19 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 30 H 0.04 0.41 6.20 -51.93 -0.32 0.09 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.65 6.55 -51.93 -0.34 0.31 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.58 8.04 -51.93 -0.42 0.17 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.80 6.59 -51.93 -0.34 0.46 16 40 H 0.02 0.19 8.11 -51.93 -0.42 -0.23 16 41 H 0.09 1.46 5.78 -51.93 -0.30 1.16 16 42 H 0.11 1.27 5.84 -51.92 -0.30 0.97 16 43 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 44 H 0.40 6.93 8.32 -40.82 -0.34 6.59 16 45 H 0.02 0.61 7.20 -51.92 -0.37 0.23 16 46 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -32.34 362.62 -8.46 -40.80 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.99 Total: 1.76 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 0.60 Total: 4.81 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -1.56 Total: -53.69 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.30 Total: -15.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.34 -8.46 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789342421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.277 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds