Wall clock time and date at job start Tue Mar 31 2020 03:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47399 * 2 1 4 4 C 1.52999 * 109.47454 * 120.00971 * 2 1 3 5 5 N 1.46907 * 109.46497 * 296.25513 * 4 2 1 6 6 C 1.47013 * 111.00101 * 288.11138 * 5 4 2 7 7 C 1.53096 * 109.25780 * 177.61179 * 6 5 4 8 8 O 1.43018 * 109.25836 * 56.84627 * 7 6 5 9 9 C 1.43010 * 113.73926 * 301.33282 * 8 7 6 10 10 C 1.47022 * 110.99320 * 164.47791 * 5 4 2 11 11 N 1.46909 * 109.46480 * 240.00581 * 2 1 3 12 12 C 1.46897 * 110.99460 * 184.41475 * 11 2 1 13 13 C 1.46897 * 111.00055 * 60.46390 * 11 2 1 14 14 C 1.50697 * 109.47238 * 190.00160 * 13 11 2 15 15 O 1.21281 * 119.99568 * 359.97438 * 14 13 11 16 16 N 1.34771 * 120.00432 * 180.02562 * 14 13 11 17 17 C 1.46498 * 120.00258 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47173 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00332 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00166 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00101 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99756 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46786 * 90.00499 * 22 20 18 24 24 H 1.48501 * 109.46899 * 210.00493 * 22 20 18 25 25 H 1.48494 * 109.47215 * 330.00395 * 22 20 18 26 26 H 1.09007 * 109.46483 * 299.99272 * 1 2 3 27 27 H 1.09000 * 109.47121 * 59.99249 * 1 2 3 28 28 H 1.08998 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47285 * 56.25223 * 4 2 1 30 30 H 1.08996 * 109.47309 * 176.25924 * 4 2 1 31 31 H 1.08998 * 109.50637 * 297.54634 * 6 5 4 32 32 H 1.08999 * 109.50559 * 57.67435 * 6 5 4 33 33 H 1.08996 * 109.50553 * 296.91502 * 7 6 5 34 34 H 1.08994 * 109.54217 * 176.80416 * 7 6 5 35 35 H 1.09001 * 109.50730 * 298.73058 * 9 8 7 36 36 H 1.08999 * 109.53827 * 178.62670 * 9 8 7 37 37 H 1.08998 * 109.50536 * 302.32603 * 10 5 4 38 38 H 1.08994 * 109.50870 * 62.46009 * 10 5 4 39 39 H 1.09001 * 109.47255 * 67.25118 * 12 11 2 40 40 H 1.09003 * 109.47727 * 307.25000 * 12 11 2 41 41 H 1.09001 * 109.46823 * 187.25095 * 12 11 2 42 42 H 1.09008 * 109.46819 * 309.99586 * 13 11 2 43 43 H 1.09000 * 109.47492 * 69.99341 * 13 11 2 44 44 H 0.97005 * 119.99863 * 359.97438 * 16 14 13 45 45 H 1.09008 * 109.46921 * 299.99209 * 17 16 14 46 46 H 1.08996 * 109.47383 * 59.99792 * 17 16 14 47 47 H 0.97002 * 119.99665 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 1.6257 0.0212 2.4469 6 6 2.3866 1.2720 2.5809 7 6 1.8828 2.0408 3.8052 8 8 1.9978 1.2103 4.9639 9 6 1.2685 -0.0161 4.8678 10 6 1.7660 -0.8059 3.6543 11 7 2.0196 -0.6924 -1.1996 12 6 3.4842 -0.8042 -1.1820 13 6 1.5576 -0.0198 -2.4211 14 6 1.8655 -0.8833 -3.6172 15 8 2.4161 -1.9534 -3.4668 16 7 1.5301 -0.4659 -4.8540 17 6 1.8299 -1.3051 -6.0167 18 6 1.3559 -0.6151 -7.2698 19 1 0.8785 0.3516 -7.2065 20 6 1.5306 -1.2185 -8.4972 21 7 1.1164 -0.6166 -9.5907 22 14 2.3556 -2.8909 -8.6069 23 1 1.3272 -3.9575 -8.5070 24 1 3.0660 -3.0081 -9.9057 25 1 3.3293 -3.0363 -7.4952 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6230 -1.7279 1.2832 30 1 3.1280 -0.7798 1.2162 31 1 3.4449 1.0426 2.7052 32 1 2.2479 1.8799 1.6869 33 1 0.8388 2.3168 3.6574 34 1 2.4815 2.9412 3.9420 35 1 0.2065 0.2001 4.7509 36 1 1.4228 -0.6039 5.7727 37 1 1.1743 -1.7145 3.5438 38 1 2.8144 -1.0684 3.7958 39 1 3.7879 -1.4733 -0.3769 40 1 3.9219 0.1809 -1.0203 41 1 3.8296 -1.2030 -2.1358 42 1 0.4819 0.1459 -2.3599 43 1 2.0675 0.9381 -2.5235 44 1 1.0900 0.3902 -4.9742 45 1 2.9057 -1.4707 -6.0775 46 1 1.3200 -2.2630 -5.9147 47 1 1.2397 -1.0409 -10.4543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789342421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:24 Heat of formation + Delta-G solvation = -87.066467 kcal Electronic energy + Delta-G solvation = -24836.698209 eV Core-core repulsion = 21246.980506 eV Total energy + Delta-G solvation = -3589.717703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00657 -40.47004 -38.75068 -36.49172 -36.00521 -34.39960 -32.45114 -32.04996 -30.78234 -29.46940 -28.20257 -25.76308 -25.20517 -25.00227 -23.68769 -21.63466 -21.35434 -20.69032 -19.16075 -17.99681 -17.78505 -17.09658 -17.05265 -16.78478 -16.34874 -16.20677 -15.98716 -15.92324 -15.65898 -15.52747 -14.91431 -14.68175 -14.47604 -14.41016 -14.07724 -13.82852 -13.56196 -13.16097 -13.06724 -12.96089 -12.86986 -12.64947 -12.51196 -12.31922 -12.28608 -11.94134 -11.85010 -11.68613 -11.65232 -11.46215 -10.91985 -10.73141 -10.60648 -9.89407 -9.43758 -9.24147 -8.40183 -6.46877 1.32382 1.34592 1.47020 1.76802 2.20455 2.27990 2.70524 2.95211 2.95925 3.19448 3.75073 3.90934 3.92441 3.95848 4.03890 4.20034 4.26022 4.29061 4.31906 4.33705 4.36404 4.53646 4.56279 4.61641 4.73326 4.74228 4.79302 4.81418 4.82850 4.91475 5.01440 5.03648 5.04669 5.07507 5.15522 5.26838 5.45275 5.55558 5.85526 5.87344 5.97888 6.10987 6.17307 6.19307 6.54417 6.88907 7.16427 7.46202 8.74450 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.043877 B = 0.002376 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.995731 B =11779.363934 C =12007.581091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.092 3.908 3 H 0.049 0.951 4 C 0.068 3.932 5 N -0.534 5.534 6 C 0.016 3.984 7 C 0.064 3.936 8 O -0.408 6.408 9 C 0.064 3.936 10 C 0.019 3.981 11 N -0.536 5.536 12 C 0.026 3.974 13 C 0.045 3.955 14 C 0.500 3.500 15 O -0.579 6.579 16 N -0.708 5.708 17 C 0.235 3.765 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.025 3.975 21 N -0.931 5.931 22 Si 0.938 3.062 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.261 1.261 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.127 0.873 43 H 0.082 0.918 44 H 0.408 0.592 45 H 0.011 0.989 46 H 0.009 0.991 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 5.029 29.231 29.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.016 4.016 3 H 0.067 0.933 4 C -0.060 4.060 5 N -0.259 5.259 6 C -0.113 4.113 7 C -0.013 4.013 8 O -0.327 6.327 9 C -0.013 4.013 10 C -0.109 4.109 11 N -0.262 5.262 12 C -0.122 4.122 13 C -0.086 4.086 14 C 0.287 3.713 15 O -0.459 6.459 16 N -0.359 5.359 17 C 0.111 3.889 18 C -0.583 4.583 19 H 0.078 0.922 20 C -0.175 4.175 21 N -0.570 5.570 22 Si 0.762 3.238 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.186 1.186 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.145 0.855 43 H 0.100 0.900 44 H 0.244 0.756 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.148 3.956 29.248 29.515 hybrid contribution 1.250 0.043 -1.069 1.646 sum 1.399 3.999 28.179 28.496 Atomic orbital electron populations 1.21768 0.92862 1.02137 1.02304 1.21602 0.96947 0.95162 0.87849 0.93304 1.22058 0.97782 0.97479 0.88665 1.62114 1.55895 1.05575 1.02348 1.22874 0.95551 0.92437 1.00395 1.22761 1.01897 0.93159 0.83477 1.87960 1.72731 1.32040 1.39922 1.22775 0.95859 0.84795 0.97866 1.22824 1.00345 0.97415 0.90350 1.61568 1.11426 1.52233 1.00928 1.22429 0.86896 0.99996 1.02917 1.21985 1.04292 0.94907 0.87395 1.21229 0.78125 0.87102 0.84871 1.90609 1.44072 1.24951 1.86286 1.46027 1.60592 1.23457 1.05835 1.19042 0.95050 0.90973 0.83869 1.21304 1.40315 1.06168 0.90561 0.92171 1.25605 0.95374 1.01362 0.95146 1.69981 1.47568 1.40506 0.98908 0.85854 0.79700 0.80066 0.78229 1.19065 1.19833 1.18574 0.90229 0.92463 0.93110 0.90444 0.94647 0.94833 0.88847 0.91739 0.87177 0.91791 0.86999 0.88597 0.94709 0.90894 0.94883 0.92539 0.85518 0.89988 0.75628 0.97159 0.97299 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.88 71.98 0.64 -1.66 16 2 C 0.09 1.71 2.12 44.91 0.10 1.80 16 3 H 0.05 0.83 6.59 -2.39 -0.02 0.82 16 4 C 0.07 1.19 4.12 86.30 0.36 1.55 16 5 N -0.53 -8.02 4.08 -895.21 -3.66 -11.68 16 6 C 0.02 0.21 5.47 86.31 0.47 0.69 16 7 C 0.06 0.80 7.01 72.01 0.50 1.31 16 8 O -0.41 -6.70 10.83 -148.98 -1.61 -8.32 16 9 C 0.06 0.79 7.01 72.01 0.50 1.29 16 10 C 0.02 0.25 5.62 86.31 0.49 0.74 16 11 N -0.54 -13.39 4.37 -901.59 -3.94 -17.32 16 12 C 0.03 0.65 8.53 127.69 1.09 1.74 16 13 C 0.04 1.13 5.27 85.56 0.45 1.59 16 14 C 0.50 18.33 7.45 87.66 0.65 18.99 16 15 O -0.58 -25.94 14.41 -3.03 -0.04 -25.98 16 16 N -0.71 -27.94 5.55 -466.80 -2.59 -30.53 16 17 C 0.23 11.52 4.50 85.63 0.38 11.90 16 18 C -0.55 -30.07 9.83 25.60 0.25 -29.82 16 19 H 0.06 3.47 7.84 -2.91 -0.02 3.44 16 20 C 0.03 1.44 5.47 84.66 0.46 1.90 16 21 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 22 Si 0.94 44.30 27.47 68.60 1.88 46.19 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.26 -12.28 6.54 99.48 0.65 -11.62 16 26 H 0.08 1.23 7.71 -2.38 -0.02 1.22 16 27 H 0.06 0.93 6.21 -2.39 -0.01 0.92 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.49 7.93 -2.39 -0.02 1.47 16 30 H 0.04 0.66 6.20 -2.39 -0.01 0.64 16 31 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 1.15 6.55 -2.39 -0.02 1.13 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.12 8.04 -2.39 -0.02 1.11 16 38 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 1.71 6.59 -2.39 -0.02 1.69 16 40 H 0.03 0.71 8.11 -2.39 -0.02 0.69 16 41 H 0.06 1.83 5.78 -2.39 -0.01 1.82 16 42 H 0.13 2.69 5.84 -2.38 -0.01 2.68 16 43 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 44 H 0.41 13.90 8.32 -92.70 -0.77 13.13 16 45 H 0.01 0.54 7.20 -2.38 -0.02 0.53 16 46 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 47 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -69.23 362.62 -3.18 -72.41 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.13 Total: 18.51 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.35 Total: 12.00 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -9.88 Total: -114.80 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.66 Total: -34.30 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -69.23 -3.18 -72.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789342421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.659 kcal (2) G-P(sol) polarization free energy of solvation -69.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds