Wall clock time and date at job start Tue Mar 31 2020 03:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99643 * 2 1 4 4 C 1.53008 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47258 * 176.76654 * 4 3 2 6 6 N 1.46503 * 109.51933 * 55.60437 * 5 4 3 7 7 C 1.34773 * 120.00234 * 56.89708 * 6 5 4 8 8 O 1.21585 * 119.99850 * 4.62360 * 7 6 5 9 9 N 1.34779 * 119.99890 * 184.63287 * 7 6 5 10 10 C 1.46502 * 119.99541 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46643 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47068 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00088 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00194 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99902 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47214 * 59.99506 * 16 14 12 18 18 H 1.48498 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46951 * 299.99379 * 16 14 12 20 20 C 1.53122 * 109.52125 * 175.72873 * 5 4 3 21 21 C 1.53041 * 109.27408 * 177.62327 * 20 5 4 22 22 N 1.46842 * 109.51542 * 300.82506 * 21 20 5 23 23 C 1.46832 * 111.20799 * 61.75399 * 22 21 20 24 24 C 1.53037 * 109.51614 * 298.24681 * 23 22 21 25 25 H 1.08999 * 109.46860 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47230 * 300.00189 * 1 2 3 27 27 H 1.08999 * 109.47364 * 60.00323 * 1 2 3 28 28 H 1.08994 * 109.47369 * 60.00268 * 3 2 1 29 29 H 1.09002 * 109.47241 * 299.99737 * 3 2 1 30 30 H 1.08996 * 109.47061 * 56.76423 * 4 3 2 31 31 H 1.09005 * 109.46726 * 296.76655 * 4 3 2 32 32 H 0.97004 * 119.99746 * 236.88543 * 6 5 4 33 33 H 0.96996 * 120.00150 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.47197 * 299.99608 * 10 9 7 35 35 H 1.09004 * 109.47025 * 60.00341 * 10 9 7 36 36 H 1.08996 * 109.47915 * 299.99834 * 11 10 9 37 37 H 1.08995 * 109.47298 * 60.00711 * 11 10 9 38 38 H 0.96997 * 119.99890 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.49879 * 57.68677 * 20 5 4 40 40 H 1.08999 * 109.50301 * 297.56447 * 20 5 4 41 41 H 1.08995 * 109.46246 * 60.84287 * 21 20 5 42 42 H 1.09005 * 109.45970 * 180.81825 * 21 20 5 43 43 H 1.00904 * 111.00321 * 185.83551 * 22 21 20 44 44 H 1.09000 * 109.46387 * 178.23498 * 23 22 21 45 45 H 1.08993 * 109.45751 * 58.25728 * 23 22 21 46 46 H 1.09002 * 109.50492 * 299.24137 * 24 23 22 47 47 H 1.08997 * 109.50249 * 179.12479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1575 2.5802 -0.0820 6 7 3.6494 3.4074 1.0152 7 6 3.8020 3.0019 2.2914 8 8 4.4344 1.9929 2.5371 9 7 3.2536 3.7148 3.2952 10 6 3.4192 3.2736 4.6824 11 6 2.7055 4.2522 5.6172 12 6 2.8763 3.7988 7.0443 13 1 3.4373 2.9022 7.2626 14 6 2.3153 4.5281 8.0712 15 7 1.6317 5.6197 7.8054 16 14 2.5276 3.9665 9.8401 17 1 3.9735 3.9263 10.1766 18 1 1.8349 4.9161 10.7475 19 1 1.9438 2.6108 10.0024 20 6 5.6809 2.4684 0.0245 21 6 6.3007 3.8605 -0.1169 22 7 5.9236 4.4359 -1.4142 23 6 4.4680 4.5970 -1.5208 24 6 3.7933 3.2269 -1.4213 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8528 0.5948 -0.8604 31 1 3.8614 0.6946 0.9167 32 1 3.2032 4.2470 0.8232 33 1 2.7494 4.5198 3.0992 34 1 2.9900 2.2788 4.8009 35 1 4.4803 3.2436 4.9299 36 1 3.1349 5.2469 5.4987 37 1 1.6444 4.2827 5.3700 38 1 1.2374 6.1330 8.5279 39 1 6.0545 1.8213 -0.7690 40 1 5.9480 2.0478 0.9940 41 1 5.9373 4.5030 0.6849 42 1 7.3863 3.7825 -0.0561 43 1 6.3966 5.3130 -1.5721 44 1 4.2224 5.0540 -2.4794 45 1 4.1133 5.2361 -0.7123 46 1 4.1374 2.5917 -2.2375 47 1 2.7120 3.3483 -1.4848 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891769879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:45 Heat of formation + Delta-G solvation = -86.860285 kcal Electronic energy + Delta-G solvation = -25651.980534 eV Core-core repulsion = 22062.271771 eV Total energy + Delta-G solvation = -3589.708763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.71672 -38.34596 -37.74423 -35.13903 -34.40711 -32.95327 -31.81884 -31.04112 -29.64732 -29.02482 -26.48749 -24.78454 -24.13421 -23.19664 -21.60066 -21.08135 -20.66680 -19.08262 -18.11265 -16.99166 -16.36715 -16.30630 -16.13110 -15.55797 -15.13792 -14.86618 -14.76160 -14.48684 -14.34664 -14.27516 -13.61388 -13.46489 -13.34577 -12.87379 -12.81957 -12.32084 -12.27546 -11.97287 -11.85606 -11.37388 -11.31786 -11.19775 -11.19560 -11.02264 -10.68303 -10.64873 -10.52958 -10.28187 -9.76635 -9.64128 -9.46282 -9.23057 -9.00440 -8.62278 -8.47815 -8.24057 -6.09684 -4.12306 3.02175 3.31229 3.34871 3.38780 3.58847 3.69455 4.00927 4.38146 4.45058 4.62474 4.67323 4.81818 5.04848 5.08512 5.12859 5.15808 5.26936 5.27477 5.28773 5.34882 5.39286 5.44255 5.55877 5.62268 5.76283 5.77574 5.89460 5.95388 5.96341 6.23327 6.28549 6.37187 6.40062 6.72012 6.78213 6.82876 7.02446 7.12186 7.12999 7.25552 7.56244 7.62538 7.89448 8.25889 8.45072 8.92704 9.03142 9.52485 11.01963 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.003520 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.474372 B = 7953.581370 C = 9126.149176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.068 3.932 4 C -0.130 4.130 5 C 0.205 3.795 6 N -0.748 5.748 7 C 0.700 3.300 8 O -0.589 6.589 9 N -0.741 5.741 10 C 0.141 3.859 11 C 0.014 3.986 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.126 4.126 21 C 0.061 3.939 22 N -0.690 5.690 23 C 0.057 3.943 24 C -0.122 4.122 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.390 0.610 33 H 0.391 0.609 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.341 0.659 44 H 0.075 0.925 45 H 0.030 0.970 46 H 0.087 0.913 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -2.220 -21.951 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.009 4.009 4 C -0.168 4.168 5 C 0.118 3.882 6 N -0.405 5.405 7 C 0.401 3.599 8 O -0.467 6.467 9 N -0.394 5.394 10 C 0.019 3.981 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.165 4.165 21 C -0.068 4.068 22 N -0.321 5.321 23 C -0.072 4.072 24 C -0.160 4.160 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.224 0.776 33 H 0.223 0.777 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.158 0.842 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.106 0.894 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.606 -3.806 -21.910 22.390 hybrid contribution -0.867 1.691 1.439 2.383 sum 1.738 -2.116 -20.471 20.653 Atomic orbital electron populations 1.22711 0.81290 1.02572 0.99862 1.87865 1.19485 1.28352 1.95386 1.22508 0.94244 0.84364 0.99753 1.21933 0.93040 0.96753 1.05109 1.20008 0.93686 0.89463 0.85005 1.45385 1.64983 1.25592 1.04587 1.16046 0.80132 0.83483 0.80284 1.90831 1.45990 1.26725 1.83198 1.45588 1.57279 1.29379 1.07166 1.21560 1.00522 0.99126 0.76926 1.19309 0.95653 0.94056 0.93359 1.21019 1.33918 1.10286 0.90743 0.92279 1.24989 0.94970 0.94864 0.99417 1.69946 1.34935 1.15944 1.32598 0.86573 0.78435 0.78526 0.84016 1.20092 1.21259 1.20085 1.22024 0.93526 0.96754 1.04182 1.21874 0.99865 0.95949 0.89129 1.60336 1.06964 1.31604 1.33197 1.21895 0.88331 0.96361 1.00632 1.21964 1.00227 0.97013 0.96775 0.89780 0.94000 0.94391 0.93279 0.93852 0.90731 0.88307 0.77616 0.77656 0.92828 0.92859 0.96095 0.96091 0.92827 0.90806 0.88743 0.94821 0.90937 0.84182 0.90673 0.95145 0.89410 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.38 10.70 -35.23 -0.38 -5.76 16 3 C 0.07 0.84 5.49 37.16 0.20 1.04 16 4 C -0.13 -1.64 4.30 -26.73 -0.11 -1.76 16 5 C 0.21 2.27 0.35 -131.70 -0.05 2.22 16 6 N -0.75 -9.00 3.39 -52.30 -0.18 -9.18 16 7 C 0.70 11.59 7.62 -86.92 -0.66 10.93 16 8 O -0.59 -11.75 12.62 5.29 0.07 -11.68 16 9 N -0.74 -12.79 5.56 -65.23 -0.36 -13.16 16 10 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16 11 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 12 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 16 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.13 -1.50 4.75 -26.65 -0.13 -1.63 16 21 C 0.06 0.65 6.40 -3.83 -0.02 0.62 16 22 N -0.69 -6.05 6.84 -113.83 -0.78 -6.83 16 23 C 0.06 0.45 6.39 -3.84 -0.02 0.42 16 24 C -0.12 -1.02 4.63 -26.65 -0.12 -1.14 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.68 7.30 -51.93 -0.38 0.30 16 29 H 0.04 0.44 6.46 -51.93 -0.34 0.10 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.61 6.25 -51.93 -0.32 1.29 16 32 H 0.39 3.86 7.40 -40.82 -0.30 3.55 16 33 H 0.39 5.87 8.49 -40.82 -0.35 5.52 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.41 6.20 -51.93 -0.32 1.09 16 41 H 0.03 0.40 7.69 -51.93 -0.40 0.01 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.34 2.49 8.90 -39.29 -0.35 2.14 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.03 0.24 6.95 -51.93 -0.36 -0.12 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.54 6.62 -51.93 -0.34 0.19 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -31.89 365.48 -8.87 -40.75 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -8.08 Total: 7.22 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.38 Total: 2.13 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.58 Total: -54.56 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.31 Total: -17.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.89 -8.87 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.109 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds