Wall clock time and date at job start Tue Mar 31 2020 03:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99643 * 2 1 4 4 C 1.53008 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47258 * 176.76654 * 4 3 2 6 6 N 1.46503 * 109.51933 * 55.60437 * 5 4 3 7 7 C 1.34773 * 120.00234 * 56.89708 * 6 5 4 8 8 O 1.21585 * 119.99850 * 4.62360 * 7 6 5 9 9 N 1.34779 * 119.99890 * 184.63287 * 7 6 5 10 10 C 1.46502 * 119.99541 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46643 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47068 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00088 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00194 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99902 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47214 * 59.99506 * 16 14 12 18 18 H 1.48498 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46951 * 299.99379 * 16 14 12 20 20 C 1.53122 * 109.52125 * 175.72873 * 5 4 3 21 21 C 1.53041 * 109.27408 * 177.62327 * 20 5 4 22 22 N 1.46842 * 109.51542 * 300.82506 * 21 20 5 23 23 C 1.46832 * 111.20799 * 61.75399 * 22 21 20 24 24 C 1.53037 * 109.51614 * 298.24681 * 23 22 21 25 25 H 1.08999 * 109.46860 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47230 * 300.00189 * 1 2 3 27 27 H 1.08999 * 109.47364 * 60.00323 * 1 2 3 28 28 H 1.08994 * 109.47369 * 60.00268 * 3 2 1 29 29 H 1.09002 * 109.47241 * 299.99737 * 3 2 1 30 30 H 1.08996 * 109.47061 * 56.76423 * 4 3 2 31 31 H 1.09005 * 109.46726 * 296.76655 * 4 3 2 32 32 H 0.97004 * 119.99746 * 236.88543 * 6 5 4 33 33 H 0.96996 * 120.00150 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.47197 * 299.99608 * 10 9 7 35 35 H 1.09004 * 109.47025 * 60.00341 * 10 9 7 36 36 H 1.08996 * 109.47915 * 299.99834 * 11 10 9 37 37 H 1.08995 * 109.47298 * 60.00711 * 11 10 9 38 38 H 0.96997 * 119.99890 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.49879 * 57.68677 * 20 5 4 40 40 H 1.08999 * 109.50301 * 297.56447 * 20 5 4 41 41 H 1.08995 * 109.46246 * 60.84287 * 21 20 5 42 42 H 1.09005 * 109.45970 * 180.81825 * 21 20 5 43 43 H 1.00904 * 111.00321 * 185.83551 * 22 21 20 44 44 H 1.09000 * 109.46387 * 178.23498 * 23 22 21 45 45 H 1.08993 * 109.45751 * 58.25728 * 23 22 21 46 46 H 1.09002 * 109.50492 * 299.24137 * 24 23 22 47 47 H 1.08997 * 109.50249 * 179.12479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1575 2.5802 -0.0820 6 7 3.6494 3.4074 1.0152 7 6 3.8020 3.0019 2.2914 8 8 4.4344 1.9929 2.5371 9 7 3.2536 3.7148 3.2952 10 6 3.4192 3.2736 4.6824 11 6 2.7055 4.2522 5.6172 12 6 2.8763 3.7988 7.0443 13 1 3.4373 2.9022 7.2626 14 6 2.3153 4.5281 8.0712 15 7 1.6317 5.6197 7.8054 16 14 2.5276 3.9665 9.8401 17 1 3.9735 3.9263 10.1766 18 1 1.8349 4.9161 10.7475 19 1 1.9438 2.6108 10.0024 20 6 5.6809 2.4684 0.0245 21 6 6.3007 3.8605 -0.1169 22 7 5.9236 4.4359 -1.4142 23 6 4.4680 4.5970 -1.5208 24 6 3.7933 3.2269 -1.4213 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8528 0.5948 -0.8604 31 1 3.8614 0.6946 0.9167 32 1 3.2032 4.2470 0.8232 33 1 2.7494 4.5198 3.0992 34 1 2.9900 2.2788 4.8009 35 1 4.4803 3.2436 4.9299 36 1 3.1349 5.2469 5.4987 37 1 1.6444 4.2827 5.3700 38 1 1.2374 6.1330 8.5279 39 1 6.0545 1.8213 -0.7690 40 1 5.9480 2.0478 0.9940 41 1 5.9373 4.5030 0.6849 42 1 7.3863 3.7825 -0.0561 43 1 6.3966 5.3130 -1.5721 44 1 4.2224 5.0540 -2.4794 45 1 4.1133 5.2361 -0.7123 46 1 4.1374 2.5917 -2.2375 47 1 2.7120 3.3483 -1.4848 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891769879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:45 Heat of formation + Delta-G solvation = -111.638468 kcal Electronic energy + Delta-G solvation = -25653.054997 eV Core-core repulsion = 22062.271771 eV Total energy + Delta-G solvation = -3590.783225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82526 -39.53348 -38.68155 -36.61829 -35.60324 -34.84954 -33.13025 -31.85457 -31.10486 -30.23065 -27.33668 -26.69530 -25.07085 -24.04736 -23.14591 -22.33060 -21.94463 -20.14397 -19.45196 -18.40728 -17.82708 -17.27652 -17.13909 -16.67341 -16.50358 -16.44649 -15.94607 -15.65895 -15.50629 -15.24885 -14.98995 -14.79905 -14.33528 -14.27628 -13.96215 -13.73485 -13.22424 -13.11805 -12.93948 -12.84693 -12.70317 -12.53743 -12.34254 -12.21925 -12.17142 -12.08631 -11.67667 -11.56918 -11.48600 -11.38970 -10.80303 -10.60572 -10.56524 -10.22362 -9.74526 -9.33806 -8.24886 -6.35157 1.41046 1.43378 1.51201 1.77854 2.23698 2.40630 2.78211 3.09949 3.27172 3.38935 3.67560 3.79744 3.98147 4.13368 4.23808 4.26067 4.40578 4.44559 4.46803 4.49213 4.51422 4.52490 4.54760 4.61173 4.79729 4.85635 4.86339 4.93695 4.95763 4.98005 5.06784 5.19120 5.24299 5.26108 5.33589 5.55025 5.58425 5.69600 5.79164 6.04926 6.09102 6.17017 6.21728 6.51066 6.77668 7.17299 7.34310 7.68409 8.86817 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.003520 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.474372 B = 7953.581370 C = 9126.149176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.071 3.929 4 C -0.126 4.126 5 C 0.205 3.795 6 N -0.727 5.727 7 C 0.701 3.299 8 O -0.623 6.623 9 N -0.737 5.737 10 C 0.164 3.836 11 C 0.026 3.974 12 C -0.548 4.548 13 H 0.057 0.943 14 C 0.009 3.991 15 N -0.926 5.926 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.269 1.269 20 C -0.125 4.125 21 C 0.068 3.932 22 N -0.688 5.688 23 C 0.055 3.945 24 C -0.114 4.114 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.405 0.595 33 H 0.403 0.597 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.266 0.734 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.074 0.926 43 H 0.352 0.648 44 H 0.099 0.901 45 H 0.031 0.969 46 H 0.096 0.904 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -1.643 -23.662 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.005 4.005 4 C -0.165 4.165 5 C 0.119 3.881 6 N -0.384 5.384 7 C 0.401 3.599 8 O -0.504 6.504 9 N -0.392 5.392 10 C 0.040 3.960 11 C -0.012 4.012 12 C -0.586 4.586 13 H 0.076 0.924 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.788 3.212 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.194 1.194 20 C -0.163 4.163 21 C -0.062 4.062 22 N -0.320 5.320 23 C -0.074 4.074 24 C -0.152 4.152 25 H 0.115 0.885 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.241 0.759 33 H 0.238 0.762 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.092 0.908 43 H 0.170 0.830 44 H 0.117 0.883 45 H 0.049 0.951 46 H 0.114 0.886 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.152 -3.195 -23.678 23.989 hybrid contribution -0.732 1.486 1.899 2.520 sum 1.420 -1.709 -21.778 21.891 Atomic orbital electron populations 1.22897 0.79694 1.03755 1.00611 1.87830 1.21367 1.29147 1.95547 1.22507 0.93693 0.84141 1.00174 1.21866 0.93683 0.97486 1.03432 1.20149 0.93008 0.88922 0.86011 1.45199 1.64030 1.26048 1.03101 1.16137 0.79636 0.82836 0.81320 1.90828 1.47366 1.28266 1.83958 1.45274 1.57943 1.30086 1.05922 1.20991 0.98985 0.97434 0.78608 1.19102 0.94892 0.93979 0.93196 1.21435 1.34202 1.10524 0.92461 0.92441 1.25845 0.94463 0.94847 1.03816 1.70047 1.35567 1.16901 1.34046 0.85522 0.78697 0.78306 0.78681 1.19355 1.20470 1.19405 1.21941 0.94357 0.97639 1.02404 1.21726 0.99860 0.94857 0.89741 1.60314 1.07897 1.32358 1.31467 1.21999 0.87464 0.95984 1.01958 1.21956 1.01497 0.97231 0.94492 0.88543 0.94665 0.92135 0.95244 0.90764 0.89493 0.92546 0.75875 0.76176 0.94262 0.94055 0.97394 0.97471 0.92532 0.89999 0.92392 0.96471 0.90760 0.82961 0.88322 0.95054 0.88556 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.42 -11.22 10.70 -148.98 -1.59 -12.82 16 3 C 0.07 1.68 5.49 71.98 0.40 2.07 16 4 C -0.13 -3.16 4.30 30.60 0.13 -3.02 16 5 C 0.21 4.32 0.35 3.68 0.00 4.32 16 6 N -0.73 -16.99 3.39 -437.65 -1.48 -18.47 16 7 C 0.70 23.62 7.62 179.05 1.36 24.99 16 8 O -0.62 -25.98 12.62 -3.98 -0.05 -26.03 16 9 N -0.74 -25.92 5.56 -478.53 -2.66 -28.58 16 10 C 0.16 7.25 5.61 86.38 0.48 7.73 16 11 C 0.03 1.32 5.09 29.85 0.15 1.47 16 12 C -0.55 -30.93 9.11 25.60 0.23 -30.69 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 14 C 0.01 0.52 5.46 84.66 0.46 0.98 16 15 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 16 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 C -0.12 -2.94 4.75 30.65 0.15 -2.80 16 21 C 0.07 1.38 6.40 86.33 0.55 1.93 16 22 N -0.69 -10.35 6.84 -514.06 -3.52 -13.87 16 23 C 0.06 0.68 6.39 86.33 0.55 1.23 16 24 C -0.11 -1.54 4.63 30.65 0.14 -1.40 16 25 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.03 0.80 7.30 -2.39 -0.02 0.78 16 29 H 0.07 1.28 6.46 -2.39 -0.02 1.26 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.92 6.25 -2.38 -0.01 1.91 16 32 H 0.40 7.27 7.40 -92.71 -0.69 6.58 16 33 H 0.40 12.08 8.49 -92.71 -0.79 11.30 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.82 6.20 -2.39 -0.01 1.81 16 41 H 0.02 0.40 7.69 -2.39 -0.02 0.38 16 42 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.35 4.21 8.90 -89.69 -0.80 3.41 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.03 0.39 6.95 -2.39 -0.02 0.38 16 46 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 0.95 6.62 -2.39 -0.02 0.93 16 Total: -1.00 -70.37 365.48 -2.42 -72.80 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -1.29 Total: 26.60 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.86 Total: 8.56 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -7.38 Total: -114.99 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.64 Total: -38.85 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.37 -2.42 -72.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.843 kcal (2) G-P(sol) polarization free energy of solvation -70.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds