Wall clock time and date at job start Tue Mar 31 2020 03:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00129 * 2 1 4 4 C 1.46905 * 111.00040 * 123.94907 * 2 1 3 5 5 C 1.52999 * 109.46783 * 66.04647 * 4 2 1 6 6 C 1.53010 * 109.46831 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.46988 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00182 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00111 * 179.72825 * 7 6 5 10 10 C 1.46500 * 120.00003 * 180.27612 * 9 7 6 11 11 H 1.08997 * 109.46109 * 324.96793 * 10 9 7 12 12 C 1.53036 * 109.46208 * 84.93369 * 10 9 7 13 13 C 1.53194 * 109.31366 * 181.38462 * 12 10 9 14 14 N 1.46929 * 108.77313 * 305.35909 * 13 12 10 15 15 C 1.36933 * 120.63263 * 233.62857 * 14 13 12 16 16 H 1.08006 * 119.99696 * 27.67246 * 15 14 13 17 17 C 1.38806 * 120.00214 * 207.66737 * 15 14 13 18 18 N 1.31622 * 119.99866 * 17.36435 * 17 15 14 19 19 Si 1.86803 * 120.00198 * 197.36172 * 17 15 14 20 20 H 1.48501 * 109.46915 * 60.00147 * 19 17 15 21 21 H 1.48495 * 109.47045 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46853 * 300.00232 * 19 17 15 23 23 C 1.46926 * 118.73580 * 53.61588 * 14 13 12 24 24 C 1.53046 * 109.45700 * 205.00050 * 10 9 7 25 25 H 1.08998 * 109.50068 * 58.66250 * 24 10 9 26 26 O 1.42901 * 109.49641 * 298.56395 * 24 10 9 27 27 H 1.08998 * 109.47236 * 296.04652 * 1 2 3 28 28 H 1.08994 * 109.47459 * 56.04933 * 1 2 3 29 29 H 1.09005 * 109.46927 * 176.05185 * 1 2 3 30 30 H 1.09000 * 109.47197 * 183.95766 * 3 2 1 31 31 H 1.09003 * 109.46807 * 303.95230 * 3 2 1 32 32 H 1.09003 * 109.47193 * 63.94860 * 3 2 1 33 33 H 1.09000 * 109.47296 * 306.05131 * 4 2 1 34 34 H 1.09001 * 109.47177 * 186.04695 * 4 2 1 35 35 H 1.09000 * 109.47260 * 60.00473 * 5 4 2 36 36 H 1.08992 * 109.47852 * 299.99899 * 5 4 2 37 37 H 1.09000 * 109.46518 * 60.00380 * 6 5 4 38 38 H 1.09001 * 109.47448 * 300.00243 * 6 5 4 39 39 H 0.96997 * 119.99948 * 0.27644 * 9 7 6 40 40 H 1.08999 * 109.49554 * 301.33454 * 12 10 9 41 41 H 1.09007 * 109.49955 * 61.42826 * 12 10 9 42 42 H 1.09005 * 109.58130 * 185.57595 * 13 12 10 43 43 H 1.08995 * 109.70508 * 65.22254 * 13 12 10 44 44 H 0.97000 * 119.99814 * 179.97438 * 18 17 15 45 45 H 1.08996 * 109.58428 * 186.60333 * 23 14 13 46 46 H 1.08995 * 109.59071 * 66.17117 * 23 14 13 47 47 H 0.96699 * 113.99705 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9705 6 6 2.1803 -3.0404 2.1551 7 6 1.8223 -4.4948 1.9902 8 8 1.1908 -4.8578 1.0204 9 7 2.2091 -5.3934 2.9173 10 6 1.8663 -6.8083 2.7538 11 1 0.8855 -6.8926 2.2857 12 6 2.9136 -7.4877 1.8686 13 6 2.5332 -8.9586 1.6716 14 7 2.3610 -9.5832 2.9903 15 6 3.0421 -10.7258 3.3155 16 1 3.9946 -10.9369 2.8522 17 6 2.5084 -11.6125 4.2405 18 7 1.2301 -11.5520 4.5484 19 14 3.6042 -12.8917 5.0481 20 1 4.6946 -12.2109 5.7916 21 1 2.7986 -13.7102 5.9895 22 1 4.1903 -13.7710 4.0049 23 6 1.4443 -8.9583 3.9536 24 6 1.8368 -7.4874 4.1250 25 1 1.1073 -6.9882 4.7627 26 8 3.1310 -7.4060 4.7255 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7043 1.8724 0.9233 33 1 1.5610 -0.3872 2.0629 34 1 3.0797 -0.6610 1.1757 35 1 2.0658 -2.6213 0.0453 36 1 0.5472 -2.3475 0.9324 37 1 1.7462 -2.6616 3.0805 38 1 3.2646 -2.9354 2.1928 39 1 2.7144 -5.1033 3.6927 40 1 2.9505 -6.9887 0.9003 41 1 3.8907 -7.4256 2.3479 42 1 3.3254 -9.4707 1.1253 43 1 1.6008 -9.0252 1.1110 44 1 0.8571 -12.1719 5.1946 45 1 1.5178 -9.4703 4.9130 46 1 0.4223 -9.0226 3.5801 47 1 3.1859 -7.8176 5.5988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099969209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:59 Heat of formation + Delta-G solvation = -67.146261 kcal Electronic energy + Delta-G solvation = -25018.697154 eV Core-core repulsion = 21429.843255 eV Total energy + Delta-G solvation = -3588.853898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.81231 -38.20321 -37.65107 -34.78971 -34.27611 -33.35990 -32.02140 -29.56291 -29.07637 -27.91300 -27.52602 -25.08208 -23.44360 -22.32503 -21.73491 -20.95049 -20.01152 -19.30336 -17.36542 -16.78614 -16.19428 -16.07755 -15.61787 -15.34222 -15.16551 -14.89332 -14.84999 -13.94283 -13.93437 -13.70990 -13.53803 -13.19910 -12.80696 -12.70543 -12.50062 -12.13567 -12.05998 -12.00545 -11.91885 -11.62730 -11.44520 -11.23959 -11.11644 -10.79262 -10.76613 -10.59374 -10.46133 -10.17520 -10.05316 -9.76290 -9.52652 -9.16856 -8.66637 -8.65534 -8.48608 -6.68497 -5.81713 -3.22095 2.85362 3.33959 3.37902 3.42789 3.44540 3.73965 4.47771 4.65429 4.74708 4.82696 4.88072 4.91330 5.05635 5.15085 5.20993 5.29884 5.31767 5.37253 5.42222 5.44162 5.47668 5.51630 5.53177 5.59829 5.68544 5.96731 5.99530 6.05013 6.19437 6.23063 6.32046 6.48576 6.58269 6.71060 6.73819 6.80699 6.89551 7.00045 7.17831 7.42768 7.76674 7.81449 8.23914 8.42670 8.48410 9.17724 9.80985 10.37974 11.27134 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.045770 B = 0.002530 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.605944 B =11062.633791 C =11150.242579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.054 3.946 5 C -0.101 4.101 6 C -0.140 4.140 7 C 0.507 3.493 8 O -0.545 6.545 9 N -0.721 5.721 10 C 0.162 3.838 11 H 0.089 0.911 12 C -0.135 4.135 13 C 0.148 3.852 14 N -0.583 5.583 15 C -0.242 4.242 16 H 0.065 0.935 17 C -0.002 4.002 18 N -0.908 5.908 19 Si 0.904 3.096 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.283 1.283 23 C 0.145 3.855 24 C 0.073 3.927 25 H 0.042 0.958 26 O -0.560 6.560 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.023 0.977 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.401 0.599 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.254 0.746 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 22.144 -1.848 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.180 4.180 7 C 0.293 3.707 8 O -0.422 6.422 9 N -0.371 5.371 10 C 0.058 3.942 11 H 0.107 0.893 12 C -0.175 4.175 13 C 0.021 3.979 14 N -0.305 5.305 15 C -0.372 4.372 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.553 5.553 19 Si 0.734 3.266 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.209 1.209 23 C 0.018 3.982 24 C 0.012 3.988 25 H 0.060 0.940 26 O -0.365 6.365 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.235 0.765 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.045 0.955 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.553 21.831 -3.438 22.107 hybrid contribution 0.302 -0.439 2.192 2.256 sum 0.855 21.392 -1.246 21.445 Atomic orbital electron populations 1.22462 0.87252 1.02872 1.00244 1.61944 1.08231 1.13629 1.43371 1.22384 1.00793 0.88849 1.00372 1.22189 1.00139 0.93983 0.91077 1.21320 1.02027 0.92352 0.98183 1.21625 1.03065 0.92541 1.00802 1.20626 0.79296 0.87970 0.82766 1.90702 1.40252 1.81123 1.30160 1.46247 1.57004 1.08303 1.25534 1.20983 0.99493 0.78289 0.95436 0.89323 1.22285 0.99310 0.97860 0.98091 1.20898 0.98188 0.90474 0.88370 1.43875 1.50881 1.26657 1.09107 1.19143 0.99266 0.96510 1.22270 0.91712 1.25019 0.95245 0.97561 1.02152 1.70014 1.10228 1.39100 1.35954 0.86345 0.79828 0.81176 0.79299 1.21066 1.21750 1.20913 1.21440 0.92250 0.87463 0.97044 1.22838 0.84641 0.99351 0.91992 0.93991 1.86345 1.31820 1.81393 1.36948 0.95740 0.91501 0.90643 0.91344 0.91398 0.95800 0.94850 0.90705 0.90229 0.91119 0.89338 0.88999 0.76511 0.92918 0.91278 0.92489 0.96250 0.93604 0.88637 0.95496 0.77873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.06 0.56 0.72 16 2 N -0.55 -4.99 5.02 -251.26 -1.26 -6.25 16 3 C 0.02 0.17 9.57 60.07 0.57 0.75 16 4 C 0.05 0.46 4.96 -3.82 -0.02 0.44 16 5 C -0.10 -1.04 4.43 -26.73 -0.12 -1.16 16 6 C -0.14 -1.37 5.70 -27.88 -0.16 -1.53 16 7 C 0.51 7.34 7.79 -10.99 -0.09 7.25 16 8 O -0.54 -10.07 15.65 5.55 0.09 -9.99 16 9 N -0.72 -10.46 5.05 -53.77 -0.27 -10.73 16 10 C 0.16 2.89 2.20 -67.89 -0.15 2.74 16 11 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 12 C -0.14 -2.59 5.51 -26.61 -0.15 -2.74 16 13 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 14 N -0.58 -14.43 2.94 -172.32 -0.51 -14.93 16 15 C -0.24 -6.56 9.58 -15.06 -0.14 -6.70 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 17 C 0.00 -0.05 4.91 -17.43 -0.09 -0.14 16 18 N -0.91 -25.70 11.19 55.49 0.62 -25.08 16 19 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.15 3.31 4.95 -3.71 -0.02 3.29 16 24 C 0.07 1.32 3.38 -26.61 -0.09 1.23 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 O -0.56 -9.79 12.09 -35.23 -0.43 -10.22 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 29 H 0.07 0.68 6.47 -51.93 -0.34 0.34 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 32 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 35 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.40 5.00 8.25 -40.82 -0.34 4.67 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.39 7.61 -51.93 -0.40 0.99 16 42 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.10 2.38 6.03 -51.93 -0.31 2.06 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.37 5.70 9.08 45.56 0.41 6.11 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -31.69 371.11 -8.67 -40.35 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.57 Total: 7.56 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 0.09 Total: 7.35 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -1.42 Total: -56.99 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.34 Total: -20.20 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.69 -8.67 -40.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099969209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.791 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds