Wall clock time and date at job start Tue Mar 31 2020 03:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00129 * 2 1 4 4 C 1.46905 * 111.00040 * 123.94907 * 2 1 3 5 5 C 1.52999 * 109.46783 * 66.04647 * 4 2 1 6 6 C 1.53010 * 109.46831 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.46988 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00182 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00111 * 179.72825 * 7 6 5 10 10 C 1.46500 * 120.00003 * 180.27612 * 9 7 6 11 11 H 1.08997 * 109.46109 * 324.96793 * 10 9 7 12 12 C 1.53036 * 109.46208 * 84.93369 * 10 9 7 13 13 C 1.53194 * 109.31366 * 181.38462 * 12 10 9 14 14 N 1.46929 * 108.77313 * 305.35909 * 13 12 10 15 15 C 1.36933 * 120.63263 * 233.62857 * 14 13 12 16 16 H 1.08006 * 119.99696 * 27.67246 * 15 14 13 17 17 C 1.38806 * 120.00214 * 207.66737 * 15 14 13 18 18 N 1.31622 * 119.99866 * 17.36435 * 17 15 14 19 19 Si 1.86803 * 120.00198 * 197.36172 * 17 15 14 20 20 H 1.48501 * 109.46915 * 60.00147 * 19 17 15 21 21 H 1.48495 * 109.47045 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46853 * 300.00232 * 19 17 15 23 23 C 1.46926 * 118.73580 * 53.61588 * 14 13 12 24 24 C 1.53046 * 109.45700 * 205.00050 * 10 9 7 25 25 H 1.08998 * 109.50068 * 58.66250 * 24 10 9 26 26 O 1.42901 * 109.49641 * 298.56395 * 24 10 9 27 27 H 1.08998 * 109.47236 * 296.04652 * 1 2 3 28 28 H 1.08994 * 109.47459 * 56.04933 * 1 2 3 29 29 H 1.09005 * 109.46927 * 176.05185 * 1 2 3 30 30 H 1.09000 * 109.47197 * 183.95766 * 3 2 1 31 31 H 1.09003 * 109.46807 * 303.95230 * 3 2 1 32 32 H 1.09003 * 109.47193 * 63.94860 * 3 2 1 33 33 H 1.09000 * 109.47296 * 306.05131 * 4 2 1 34 34 H 1.09001 * 109.47177 * 186.04695 * 4 2 1 35 35 H 1.09000 * 109.47260 * 60.00473 * 5 4 2 36 36 H 1.08992 * 109.47852 * 299.99899 * 5 4 2 37 37 H 1.09000 * 109.46518 * 60.00380 * 6 5 4 38 38 H 1.09001 * 109.47448 * 300.00243 * 6 5 4 39 39 H 0.96997 * 119.99948 * 0.27644 * 9 7 6 40 40 H 1.08999 * 109.49554 * 301.33454 * 12 10 9 41 41 H 1.09007 * 109.49955 * 61.42826 * 12 10 9 42 42 H 1.09005 * 109.58130 * 185.57595 * 13 12 10 43 43 H 1.08995 * 109.70508 * 65.22254 * 13 12 10 44 44 H 0.97000 * 119.99814 * 179.97438 * 18 17 15 45 45 H 1.08996 * 109.58428 * 186.60333 * 23 14 13 46 46 H 1.08995 * 109.59071 * 66.17117 * 23 14 13 47 47 H 0.96699 * 113.99705 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9705 6 6 2.1803 -3.0404 2.1551 7 6 1.8223 -4.4948 1.9902 8 8 1.1908 -4.8578 1.0204 9 7 2.2091 -5.3934 2.9173 10 6 1.8663 -6.8083 2.7538 11 1 0.8855 -6.8926 2.2857 12 6 2.9136 -7.4877 1.8686 13 6 2.5332 -8.9586 1.6716 14 7 2.3610 -9.5832 2.9903 15 6 3.0421 -10.7258 3.3155 16 1 3.9946 -10.9369 2.8522 17 6 2.5084 -11.6125 4.2405 18 7 1.2301 -11.5520 4.5484 19 14 3.6042 -12.8917 5.0481 20 1 4.6946 -12.2109 5.7916 21 1 2.7986 -13.7102 5.9895 22 1 4.1903 -13.7710 4.0049 23 6 1.4443 -8.9583 3.9536 24 6 1.8368 -7.4874 4.1250 25 1 1.1073 -6.9882 4.7627 26 8 3.1310 -7.4060 4.7255 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7043 1.8724 0.9233 33 1 1.5610 -0.3872 2.0629 34 1 3.0797 -0.6610 1.1757 35 1 2.0658 -2.6213 0.0453 36 1 0.5472 -2.3475 0.9324 37 1 1.7462 -2.6616 3.0805 38 1 3.2646 -2.9354 2.1928 39 1 2.7144 -5.1033 3.6927 40 1 2.9505 -6.9887 0.9003 41 1 3.8907 -7.4256 2.3479 42 1 3.3254 -9.4707 1.1253 43 1 1.6008 -9.0252 1.1110 44 1 0.8571 -12.1719 5.1946 45 1 1.5178 -9.4703 4.9130 46 1 0.4223 -9.0226 3.5801 47 1 3.1859 -7.8176 5.5988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099969209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:58 Heat of formation + Delta-G solvation = -92.086854 kcal Electronic energy + Delta-G solvation = -25019.778659 eV Core-core repulsion = 21429.843255 eV Total energy + Delta-G solvation = -3589.935404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09375 -39.54472 -38.49506 -36.48638 -35.69033 -34.27170 -33.77306 -31.24414 -30.72109 -28.57260 -28.40067 -26.80346 -24.54099 -23.88293 -23.26644 -21.72602 -21.25860 -20.82603 -19.14361 -17.95826 -17.51632 -17.08495 -16.98718 -16.75222 -16.22961 -16.00404 -15.66170 -15.58302 -15.37357 -15.16984 -14.91781 -14.57200 -14.32339 -13.79985 -13.64964 -13.32117 -13.21882 -13.04253 -12.84680 -12.74516 -12.62062 -12.57038 -12.39166 -12.31682 -12.20909 -12.19327 -12.02235 -11.83434 -11.53324 -11.44105 -10.85073 -10.69501 -10.57869 -9.96406 -9.27906 -8.68514 -7.87747 -5.31820 1.49548 1.50277 1.58105 1.71897 2.23162 2.52019 3.07034 3.24940 3.40640 3.63132 3.80459 3.90591 3.99797 4.04053 4.13793 4.27775 4.35388 4.40167 4.43893 4.52946 4.56828 4.59842 4.68114 4.68485 4.77392 4.77901 4.81336 4.91634 4.96815 5.03704 5.04099 5.06671 5.17985 5.21494 5.37920 5.43188 5.55360 5.57360 5.64733 6.09747 6.14513 6.36732 6.67476 6.91985 7.14416 7.35554 7.82232 8.35500 9.18607 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.045770 B = 0.002530 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.605944 B =11062.633791 C =11150.242579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.570 5.570 3 C 0.025 3.975 4 C 0.060 3.940 5 C -0.095 4.095 6 C -0.127 4.127 7 C 0.504 3.496 8 O -0.590 6.590 9 N -0.710 5.710 10 C 0.168 3.832 11 H 0.069 0.931 12 C -0.118 4.118 13 C 0.144 3.856 14 N -0.598 5.598 15 C -0.255 4.255 16 H 0.062 0.938 17 C -0.048 4.048 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.275 1.275 21 H -0.295 1.295 22 H -0.281 1.281 23 C 0.149 3.851 24 C 0.092 3.908 25 H 0.069 0.931 26 O -0.560 6.560 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.415 0.585 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.009 0.991 44 H 0.251 0.749 45 H 0.073 0.927 46 H 0.002 0.998 47 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 24.211 -0.683 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.294 5.294 3 C -0.123 4.123 4 C -0.068 4.068 5 C -0.134 4.134 6 C -0.167 4.167 7 C 0.292 3.708 8 O -0.470 6.470 9 N -0.361 5.361 10 C 0.062 3.938 11 H 0.087 0.913 12 C -0.158 4.158 13 C 0.017 3.983 14 N -0.321 5.321 15 C -0.385 4.385 16 H 0.079 0.921 17 C -0.244 4.244 18 N -0.582 5.582 19 Si 0.797 3.203 20 H -0.201 1.201 21 H -0.221 1.221 22 H -0.207 1.207 23 C 0.022 3.978 24 C 0.031 3.969 25 H 0.087 0.913 26 O -0.367 6.367 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.252 0.748 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.027 0.973 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.020 0.980 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.988 23.942 -2.253 24.130 hybrid contribution -0.166 -1.088 1.753 2.069 sum 1.822 22.854 -0.501 22.932 Atomic orbital electron populations 1.22435 0.87166 1.02190 1.00922 1.61934 1.08576 1.14930 1.43952 1.22413 1.01117 0.87818 1.00958 1.22132 1.00894 0.92366 0.91430 1.21230 1.00824 0.93917 0.97393 1.21630 1.04791 0.88571 1.01709 1.21481 0.78009 0.89665 0.81610 1.90693 1.42229 1.82110 1.32011 1.46043 1.57089 1.06704 1.26268 1.20640 0.98047 0.80370 0.94720 0.91313 1.22049 0.99333 0.95859 0.98564 1.20975 0.97658 0.92293 0.87336 1.44102 1.50940 1.26674 1.10408 1.19392 0.99323 0.97435 1.22363 0.92068 1.25724 0.96338 0.99541 1.02747 1.70166 1.11675 1.39956 1.36443 0.85325 0.78144 0.78728 0.78107 1.20067 1.22075 1.20750 1.21339 0.90820 0.90346 0.95271 1.22484 0.85578 0.96078 0.92785 0.91334 1.86317 1.31184 1.81310 1.37847 0.95052 0.90830 0.92025 0.90755 0.90938 0.95099 0.93643 0.89499 0.92748 0.92764 0.86344 0.86392 0.74810 0.92621 0.91628 0.92657 0.97303 0.93988 0.90840 0.98006 0.76514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.32 127.69 1.19 1.52 16 2 N -0.57 -9.45 5.02 -948.84 -4.76 -14.21 16 3 C 0.02 0.30 9.57 127.69 1.22 1.52 16 4 C 0.06 0.87 4.96 86.30 0.43 1.30 16 5 C -0.10 -1.84 4.43 30.60 0.14 -1.71 16 6 C -0.13 -2.12 5.70 29.85 0.17 -1.94 16 7 C 0.50 13.73 7.79 87.65 0.68 14.41 16 8 O -0.59 -21.78 15.65 -3.05 -0.05 -21.83 16 9 N -0.71 -19.07 5.05 -442.41 -2.23 -21.30 16 10 C 0.17 5.84 2.20 45.02 0.10 5.94 16 11 H 0.07 2.71 7.58 -2.39 -0.02 2.70 16 12 C -0.12 -4.47 5.51 30.67 0.17 -4.30 16 13 C 0.14 6.40 6.52 86.36 0.56 6.97 16 14 N -0.60 -30.04 2.94 -699.09 -2.05 -32.09 16 15 C -0.25 -13.92 9.58 84.03 0.81 -13.12 16 16 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 17 C -0.05 -2.64 4.91 84.86 0.42 -2.23 16 18 N -0.94 -53.89 11.19 21.65 0.24 -53.65 16 19 Si 0.97 44.01 29.59 68.60 2.03 46.04 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 C 0.15 6.88 4.95 86.36 0.43 7.31 16 24 C 0.09 3.22 3.38 30.68 0.10 3.33 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 O -0.56 -18.39 12.09 -148.98 -1.80 -20.19 16 27 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 29 H 0.06 1.11 6.47 -2.38 -0.02 1.09 16 30 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 31 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16 34 H 0.09 1.07 8.06 -2.39 -0.02 1.05 16 35 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.05 1.22 6.51 -2.39 -0.02 1.21 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.42 8.95 8.25 -92.71 -0.77 8.18 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.55 7.61 -2.38 -0.02 2.53 16 42 H 0.05 2.42 7.93 -2.38 -0.02 2.41 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.07 3.71 6.03 -2.39 -0.01 3.70 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.39 10.93 9.08 -74.06 -0.67 10.26 16 Total: -1.00 -69.36 371.11 -2.70 -72.06 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.48 Total: 26.18 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 6.41 Total: 18.99 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -8.81 Total: -121.25 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.85 Total: -42.01 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.36 -2.70 -72.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099969209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.029 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds