Wall clock time and date at job start Tue Mar 31 2020 03:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46901 * 111.00165 * 2 1 4 4 C 1.46900 * 111.00116 * 123.95696 * 2 1 3 5 5 C 1.53002 * 109.47432 * 170.00128 * 4 2 1 6 6 C 1.52993 * 109.47242 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47086 * 179.97438 * 6 5 4 8 8 O 1.21272 * 120.00127 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99728 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99705 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46354 * 325.03023 * 10 9 7 12 12 C 1.53044 * 109.45951 * 84.99760 * 10 9 7 13 13 C 1.53193 * 109.31361 * 181.38376 * 12 10 9 14 14 N 1.46923 * 108.77440 * 305.36800 * 13 12 10 15 15 C 1.36942 * 120.63296 * 233.58110 * 14 13 12 16 16 H 1.08001 * 120.00199 * 151.83335 * 15 14 13 17 17 C 1.38810 * 119.99746 * 331.84393 * 15 14 13 18 18 N 1.31620 * 120.00252 * 343.06884 * 17 15 14 19 19 Si 1.86801 * 119.99982 * 163.07901 * 17 15 14 20 20 H 1.48497 * 109.47341 * 89.99563 * 19 17 15 21 21 H 1.48506 * 109.46953 * 209.99400 * 19 17 15 22 22 H 1.48496 * 109.46759 * 329.98930 * 19 17 15 23 23 C 1.46924 * 118.74134 * 53.61100 * 14 13 12 24 24 C 1.53035 * 109.46111 * 205.07010 * 10 9 7 25 25 H 1.09004 * 109.49330 * 298.56555 * 24 10 9 26 26 O 1.42893 * 109.49849 * 58.66339 * 24 10 9 27 27 H 1.08997 * 109.47269 * 296.04405 * 1 2 3 28 28 H 1.09001 * 109.47418 * 56.04311 * 1 2 3 29 29 H 1.09000 * 109.47104 * 176.04203 * 1 2 3 30 30 H 1.09005 * 109.47372 * 183.95079 * 3 2 1 31 31 H 1.08999 * 109.47321 * 303.95129 * 3 2 1 32 32 H 1.09006 * 109.46972 * 63.95508 * 3 2 1 33 33 H 1.09000 * 109.47239 * 50.00208 * 4 2 1 34 34 H 1.09004 * 109.47049 * 290.00069 * 4 2 1 35 35 H 1.09004 * 109.46956 * 299.99998 * 5 4 2 36 36 H 1.08999 * 109.47005 * 59.99309 * 5 4 2 37 37 H 1.09004 * 109.47066 * 299.99836 * 6 5 4 38 38 H 1.08999 * 109.47763 * 59.99677 * 6 5 4 39 39 H 0.96995 * 120.00308 * 0.02562 * 9 7 6 40 40 H 1.08991 * 109.50044 * 301.33786 * 12 10 9 41 41 H 1.09003 * 109.49518 * 61.43357 * 12 10 9 42 42 H 1.09000 * 109.58535 * 65.15592 * 13 12 10 43 43 H 1.09002 * 109.58727 * 185.58243 * 13 12 10 44 44 H 0.96996 * 120.00047 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.59036 * 66.17127 * 23 14 13 46 46 H 1.09000 * 109.59090 * 186.46106 * 23 14 13 47 47 H 0.96705 * 114.00231 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9703 6 6 4.0526 -1.7537 2.1547 7 6 5.5388 -1.9408 1.9897 8 8 6.1038 -1.4812 1.0200 9 7 6.2400 -2.6188 2.9199 10 6 7.6847 -2.8011 2.7591 11 1 7.9205 -2.9193 1.7015 12 6 8.4177 -1.5762 3.3109 13 6 9.9258 -1.7550 3.1099 14 7 10.3362 -3.0282 3.7175 15 6 11.3543 -3.0686 4.6325 16 1 11.3696 -3.8386 5.3897 17 6 12.3664 -2.1198 4.5868 18 7 12.5440 -1.3987 3.5002 19 14 13.4768 -1.8667 6.0675 20 1 14.6541 -2.7657 5.9629 21 1 13.9344 -0.4545 6.1074 22 1 12.7246 -2.1785 7.3093 23 6 9.6340 -4.2574 3.3243 24 6 8.1291 -4.0506 3.5229 25 1 7.9164 -3.9229 4.5843 26 8 7.4217 -5.1891 3.0276 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8723 0.9234 33 1 1.5089 -1.7407 1.1755 34 1 1.7974 -0.2248 2.0628 35 1 3.7023 -1.4966 0.0451 36 1 3.9909 0.0193 0.9323 37 1 3.8546 -1.2129 3.0802 38 1 3.5661 -2.7284 2.1924 39 1 5.7881 -2.9867 3.6952 40 1 8.0835 -0.6835 2.7823 41 1 8.2023 -1.4718 4.3744 42 1 10.1533 -1.7686 2.0440 43 1 10.4583 -0.9332 3.5888 44 1 13.2516 -0.7359 3.4682 45 1 9.8375 -4.4752 2.2759 46 1 9.9756 -5.0873 3.9429 47 1 7.6536 -6.0184 3.4677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099969215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:05 Heat of formation + Delta-G solvation = -68.719716 kcal Electronic energy + Delta-G solvation = -24919.450517 eV Core-core repulsion = 21330.528389 eV Total energy + Delta-G solvation = -3588.922129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.78346 -38.20176 -37.63186 -35.40547 -34.27414 -33.32047 -31.90072 -30.05583 -28.67164 -27.87833 -27.47904 -25.11428 -23.42760 -22.35296 -21.76125 -20.92765 -20.06504 -19.38622 -17.28803 -16.77429 -16.49908 -16.14578 -15.93535 -15.43628 -15.08572 -14.86481 -14.80398 -14.00348 -13.88430 -13.77088 -13.42809 -13.18683 -12.81393 -12.64619 -12.52195 -12.26365 -12.14962 -11.98917 -11.84188 -11.59975 -11.55010 -11.40471 -11.10504 -10.87447 -10.72866 -10.66268 -10.32408 -10.27615 -9.95267 -9.78180 -9.69177 -9.35898 -8.70983 -8.63633 -8.44363 -6.76937 -5.85483 -3.29995 2.92102 3.32844 3.37201 3.40689 3.42424 3.76316 4.36832 4.51787 4.69645 4.79982 4.88909 4.94213 5.08552 5.17993 5.24180 5.30160 5.32448 5.34967 5.44437 5.45410 5.48263 5.52602 5.54877 5.57942 5.72478 5.78353 5.98038 6.03210 6.13334 6.23381 6.34865 6.48680 6.55043 6.67387 6.73986 6.76987 6.77671 6.91410 7.29086 7.60427 7.72146 7.80902 7.91987 8.37367 8.53074 9.12616 9.75026 10.31224 11.23119 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.002727 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.834062 B =10263.854941 C =10931.991889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.020 3.980 4 C 0.054 3.946 5 C -0.101 4.101 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.542 6.542 9 N -0.719 5.719 10 C 0.162 3.838 11 H 0.087 0.913 12 C -0.146 4.146 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.260 4.260 16 H 0.066 0.934 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.055 0.945 26 O -0.571 6.571 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.024 0.976 43 H 0.093 0.907 44 H 0.256 0.744 45 H 0.029 0.971 46 H 0.060 0.940 47 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.545 -0.207 -0.882 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.129 4.129 4 C -0.073 4.073 5 C -0.139 4.139 6 C -0.179 4.179 7 C 0.296 3.704 8 O -0.419 6.419 9 N -0.368 5.368 10 C 0.058 3.942 11 H 0.105 0.895 12 C -0.186 4.186 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.073 0.927 26 O -0.375 6.375 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.042 0.958 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -21.108 0.481 -2.446 21.255 hybrid contribution 0.391 -0.045 2.292 2.325 sum -20.717 0.436 -0.154 20.722 Atomic orbital electron populations 1.22378 0.87433 1.02206 1.00367 1.61938 1.07650 1.14211 1.43383 1.22469 1.01658 0.88480 1.00246 1.22185 0.95966 0.98113 0.91085 1.21321 0.93224 1.01206 0.98175 1.21615 0.92983 1.02539 1.00810 1.20561 0.89237 0.78030 0.82597 1.90709 1.71797 1.48964 1.30434 1.46119 1.09376 1.56135 1.25194 1.20976 0.78388 0.93685 1.01132 0.89533 1.22591 0.99773 0.95994 1.00252 1.20829 0.88056 0.90012 0.96603 1.44043 1.37912 1.00392 1.48879 1.19138 1.00058 1.14191 1.05507 0.91593 1.25088 0.96866 1.00605 0.96883 1.70033 1.32929 1.25947 1.25324 0.86285 0.80557 0.77287 0.82536 1.21300 1.21464 1.20455 1.21529 0.89381 0.91336 0.98474 1.22769 0.94144 0.84898 0.96266 0.92674 1.86482 1.67189 1.18191 1.65673 0.95814 0.91408 0.91377 0.90593 0.91501 0.95721 0.90752 0.94852 0.90245 0.91057 0.89345 0.89075 0.77177 0.91987 0.92444 0.95809 0.88929 0.93419 0.95353 0.92198 0.78050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.57 60.06 0.57 0.75 16 2 N -0.55 -5.19 5.02 -251.26 -1.26 -6.45 16 3 C 0.02 0.17 9.32 60.07 0.56 0.73 16 4 C 0.05 0.48 4.96 -3.82 -0.02 0.46 16 5 C -0.10 -1.10 4.43 -26.73 -0.12 -1.22 16 6 C -0.14 -1.43 5.70 -27.89 -0.16 -1.58 16 7 C 0.51 7.72 7.79 -10.98 -0.09 7.63 16 8 O -0.54 -10.58 15.64 5.56 0.09 -10.49 16 9 N -0.72 -10.60 4.92 -53.77 -0.26 -10.87 16 10 C 0.16 2.94 2.12 -67.89 -0.14 2.80 16 11 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 12 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 13 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 14 N -0.59 -14.46 2.99 -172.32 -0.52 -14.97 16 15 C -0.26 -6.94 9.58 -15.06 -0.14 -7.08 16 16 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 17 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 18 N -0.90 -25.91 11.20 55.49 0.62 -25.28 16 19 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 24 C 0.08 1.37 3.14 -26.61 -0.08 1.28 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 O -0.57 -8.52 13.16 -35.23 -0.46 -8.98 16 27 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.08 0.73 6.47 -51.93 -0.34 0.39 16 31 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 32 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.07 0.87 6.51 -51.93 -0.34 0.53 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 4.71 8.60 -40.82 -0.35 4.36 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 47 H 0.37 3.97 9.09 45.56 0.41 4.39 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -32.55 372.82 -8.72 -41.27 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.61 Total: 6.62 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 0.10 Total: 7.32 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -1.42 Total: -57.58 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.38 Total: -19.47 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.55 -8.72 -41.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099969215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.451 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds