Wall clock time and date at job start Tue Mar 31 2020 03:26:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46904 * 109.47143 * 2 1
4 4 C 1.46900 * 110.99672 * 66.04483 * 3 2 1
5 5 C 1.53003 * 109.47067 * 198.26769 * 4 3 2
6 6 C 1.46900 * 110.99978 * 190.00010 * 3 2 1
7 7 C 1.50694 * 109.47186 * 75.99550 * 6 3 2
8 8 O 1.21285 * 119.99968 * 358.87596 * 7 6 3
9 9 N 1.34773 * 120.00012 * 178.87471 * 7 6 3
10 10 C 1.46503 * 119.99808 * 180.02562 * 9 7 6
11 11 H 1.08992 * 109.46355 * 325.02771 * 10 9 7
12 12 C 1.53040 * 109.46071 * 85.00173 * 10 9 7
13 13 C 1.53189 * 109.31314 * 181.38455 * 12 10 9
14 14 N 1.46926 * 108.77680 * 305.36413 * 13 12 10
15 15 C 1.36942 * 120.63074 * 233.63662 * 14 13 12
16 16 H 1.08002 * 120.00129 * 28.61230 * 15 14 13
17 17 C 1.38811 * 119.99900 * 208.62248 * 15 14 13
18 18 N 1.31625 * 119.99908 * 15.26985 * 17 15 14
19 19 Si 1.86795 * 120.00199 * 195.27609 * 17 15 14
20 20 H 1.48500 * 109.47120 * 59.99613 * 19 17 15
21 21 H 1.48502 * 109.47454 * 179.97438 * 19 17 15
22 22 H 1.48504 * 109.47133 * 299.99837 * 19 17 15
23 23 C 1.46921 * 118.73896 * 53.60694 * 14 13 12
24 24 C 1.53038 * 109.45843 * 205.06468 * 10 9 7
25 25 H 1.09000 * 109.50674 * 298.56943 * 24 10 9
26 26 O 1.42907 * 109.49647 * 58.66814 * 24 10 9
27 27 H 1.09007 * 109.47399 * 300.00311 * 1 2 3
28 28 H 1.09000 * 109.47116 * 59.99664 * 1 2 3
29 29 H 1.08997 * 109.47453 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.46883 * 239.99797 * 2 1 3
31 31 H 1.09002 * 109.46902 * 119.99841 * 2 1 3
32 32 H 1.08995 * 109.47439 * 318.26939 * 4 3 2
33 33 H 1.09004 * 109.47110 * 78.26925 * 4 3 2
34 34 H 1.09001 * 109.47228 * 54.15206 * 5 4 3
35 35 H 1.08993 * 109.47452 * 174.16051 * 5 4 3
36 36 H 1.09003 * 109.46999 * 294.15940 * 5 4 3
37 37 H 1.09002 * 109.46866 * 315.99861 * 6 3 2
38 38 H 1.08996 * 109.46578 * 196.00033 * 6 3 2
39 39 H 0.96995 * 120.00376 * 0.02562 * 9 7 6
40 40 H 1.08996 * 109.49519 * 301.33475 * 12 10 9
41 41 H 1.09003 * 109.49729 * 61.43136 * 12 10 9
42 42 H 1.09003 * 109.58878 * 65.15134 * 13 12 10
43 43 H 1.09006 * 109.58615 * 185.57475 * 13 12 10
44 44 H 0.96996 * 119.99996 * 179.97438 * 18 17 15
45 45 H 1.08999 * 109.58840 * 186.60689 * 23 14 13
46 46 H 1.09000 * 109.70514 * 66.25200 * 23 14 13
47 47 H 0.96701 * 113.99802 * 179.97438 * 26 24 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.6702 2.0669 1.2533
5 6 1.7734 3.5807 1.0563
6 6 3.4685 1.4311 -0.2381
7 6 3.7457 1.1836 -1.6986
8 8 2.8282 0.9678 -2.4619
9 7 5.0131 1.2021 -2.1565
10 6 5.2824 0.9620 -3.5764
11 1 4.5711 0.2321 -3.9627
12 6 5.1385 2.2737 -4.3516
13 6 5.3869 2.0123 -5.8404
14 7 6.6947 1.3607 -5.9944
15 6 7.6380 1.8807 -6.8401
16 1 7.6588 2.9421 -7.0388
17 6 8.5674 1.0436 -7.4420
18 7 8.3723 -0.2581 -7.4507
19 14 10.0951 1.7644 -8.2395
20 1 10.8840 2.5025 -7.2207
21 1 10.9216 0.6685 -8.8063
22 1 9.6945 2.6951 -9.3252
23 6 6.9715 0.1411 -5.2234
24 6 6.7054 0.4236 -3.7414
25 1 7.4189 1.1633 -3.3783
26 8 6.8478 -0.7852 -2.9925
27 1 -0.3634 0.5139 0.8900
28 1 -0.3633 0.5139 -0.8899
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 0.6505 1.8061 1.5367
33 1 2.3570 1.7552 2.0403
34 1 1.1656 3.8782 0.2018
35 1 1.4153 4.0889 1.9515
36 1 2.8131 3.8534 0.8750
37 1 3.9596 0.6636 0.3600
38 1 3.8519 2.4119 0.0434
39 1 5.7469 1.3743 -1.5461
40 1 4.1319 2.6687 -4.2145
41 1 5.8667 2.9961 -3.9826
42 1 4.6057 1.3608 -6.2323
43 1 5.3834 2.9577 -6.3830
44 1 9.0215 -0.8430 -7.8717
45 1 8.0137 -0.1482 -5.3589
46 1 6.3214 -0.6647 -5.5643
47 1 7.7271 -1.1832 -3.0517
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001100048986.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:26:14
Heat of formation + Delta-G solvation = -59.856978 kcal
Electronic energy + Delta-G solvation = -25602.969676 eV
Core-core repulsion = 22014.431864 eV
Total energy + Delta-G solvation = -3588.537811 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-39.85833 -38.31563 -37.13981 -35.25312 -34.20985 -32.22181 -31.91977 -30.63355
-29.33385 -28.81507 -26.49481 -24.81853 -23.19540 -22.44259 -21.83317 -20.83725
-20.03040 -19.37406 -17.36125 -16.70208 -16.58878 -16.16179 -15.74874 -15.28517
-14.82345 -14.73336 -14.48345 -14.00087 -13.84287 -13.65170 -13.39167 -13.08298
-12.93363 -12.47693 -12.43269 -12.16671 -12.08287 -11.88275 -11.75574 -11.65413
-11.60691 -11.18045 -11.09852 -10.82032 -10.78640 -10.77546 -10.36972 -10.20523
-10.01068 -9.75286 -9.47519 -9.28869 -8.68258 -8.51691 -8.40296 -6.75867
-5.86349 -3.31503 2.94848 3.23017 3.33889 3.39667 3.40417 3.91865
4.41314 4.60418 4.72071 4.85785 4.99056 5.01596 5.14660 5.20969
5.27084 5.31380 5.36276 5.42747 5.46797 5.50908 5.54261 5.63777
5.67181 5.81936 5.94204 5.97086 6.04260 6.06235 6.11927 6.16314
6.27824 6.49142 6.51676 6.73264 6.81920 6.92618 6.94248 6.96485
7.13951 7.48025 7.71616 7.85691 8.10614 8.37433 8.58400 9.12217
9.74533 10.31253 11.21925
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.031032 B = 0.003090 C = 0.003022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 902.084567 B = 9060.623712 C = 9264.602732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.052 3.948
3 N -0.520 5.520
4 C 0.046 3.954
5 C -0.149 4.149
6 C 0.034 3.966
7 C 0.511 3.489
8 O -0.524 6.524
9 N -0.720 5.720
10 C 0.165 3.835
11 H 0.086 0.914
12 C -0.138 4.138
13 C 0.145 3.855
14 N -0.589 5.589
15 C -0.256 4.256
16 H 0.068 0.932
17 C 0.003 3.997
18 N -0.903 5.903
19 Si 0.905 3.095
20 H -0.284 1.284
21 H -0.290 1.290
22 H -0.281 1.281
23 C 0.149 3.851
24 C 0.072 3.928
25 H 0.051 0.949
26 O -0.573 6.573
27 H 0.051 0.949
28 H 0.066 0.934
29 H 0.057 0.943
30 H 0.084 0.916
31 H 0.027 0.973
32 H 0.080 0.920
33 H 0.033 0.967
34 H 0.066 0.934
35 H 0.057 0.943
36 H 0.052 0.948
37 H 0.062 0.938
38 H 0.100 0.900
39 H 0.394 0.606
40 H 0.064 0.936
41 H 0.060 0.940
42 H 0.024 0.976
43 H 0.060 0.940
44 H 0.256 0.744
45 H 0.094 0.906
46 H 0.029 0.971
47 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.528 2.890 18.297 20.392
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.075 4.075
3 N -0.245 5.245
4 C -0.081 4.081
5 C -0.206 4.206
6 C -0.097 4.097
7 C 0.296 3.704
8 O -0.400 6.400
9 N -0.371 5.371
10 C 0.061 3.939
11 H 0.104 0.896
12 C -0.179 4.179
13 C 0.018 3.982
14 N -0.313 5.313
15 C -0.385 4.385
16 H 0.086 0.914
17 C -0.196 4.196
18 N -0.548 5.548
19 Si 0.735 3.265
20 H -0.210 1.210
21 H -0.216 1.216
22 H -0.208 1.208
23 C 0.021 3.979
24 C 0.011 3.989
25 H 0.068 0.932
26 O -0.378 6.378
27 H 0.070 0.930
28 H 0.085 0.915
29 H 0.076 0.924
30 H 0.102 0.898
31 H 0.045 0.955
32 H 0.098 0.902
33 H 0.051 0.949
34 H 0.085 0.915
35 H 0.076 0.924
36 H 0.071 0.929
37 H 0.080 0.920
38 H 0.118 0.882
39 H 0.227 0.773
40 H 0.082 0.918
41 H 0.078 0.922
42 H 0.041 0.959
43 H 0.078 0.922
44 H 0.066 0.934
45 H 0.112 0.888
46 H 0.047 0.953
47 H 0.222 0.778
Dipole moment (debyes) X Y Z Total
from point charges -9.966 2.964 17.408 20.277
hybrid contribution 2.287 -0.154 0.385 2.324
sum -7.679 2.811 17.793 19.582
Atomic orbital electron populations
1.21776 0.94803 1.01391 1.02302 1.22128 0.96319 0.88205 1.00890
1.61654 1.11669 1.16751 1.34395 1.22183 1.01172 0.95050 0.89721
1.21799 1.02082 0.94725 1.02022 1.22001 0.90138 1.03048 0.94533
1.20412 0.82907 0.77113 0.89996 1.90687 1.43763 1.47560 1.57950
1.46101 1.07607 1.72678 1.10692 1.20929 0.96166 0.97296 0.79524
0.89607 1.22402 1.00996 0.96184 0.98288 1.20948 0.88366 0.96968
0.91919 1.43989 1.11003 1.28547 1.47780 1.19175 1.07585 0.91629
1.20137 0.91443 1.25111 1.00679 0.95546 0.98269 1.69999 1.35536
1.02287 1.46943 0.86326 0.82928 0.77999 0.79250 1.20996 1.21578
1.20757 1.21413 1.02727 0.88819 0.84895 1.22991 0.94833 0.85471
0.95599 0.93153 1.86412 1.37477 1.41287 1.72627 0.93043 0.91481
0.92435 0.89773 0.95492 0.90217 0.94915 0.91524 0.92404 0.92934
0.91993 0.88212 0.77266 0.91770 0.92152 0.95851 0.92163 0.93429
0.88804 0.95305 0.77828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.45 9.88 37.16 0.37 -1.08 16
2 C 0.05 0.60 5.29 -3.82 -0.02 0.58 16
3 N -0.52 -6.06 4.01 -236.07 -0.95 -7.01 16
4 C 0.05 0.41 5.55 -3.82 -0.02 0.39 16
5 C -0.15 -1.23 9.92 37.16 0.37 -0.86 16
6 C 0.03 0.39 5.31 -4.98 -0.03 0.36 16
7 C 0.51 7.82 7.48 -10.99 -0.08 7.74 16
8 O -0.52 -10.11 14.86 5.55 0.08 -10.03 16
9 N -0.72 -10.73 4.92 -53.77 -0.26 -10.99 16
10 C 0.16 3.00 2.12 -67.89 -0.14 2.85 16
11 H 0.09 1.82 7.57 -51.93 -0.39 1.43 16
12 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16
13 C 0.14 3.09 6.52 -3.71 -0.02 3.07 16
14 N -0.59 -14.49 2.99 -172.32 -0.52 -15.01 16
15 C -0.26 -6.85 9.59 -15.06 -0.14 -6.99 16
16 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16
17 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16
18 N -0.90 -25.56 11.13 55.49 0.62 -24.94 16
19 Si 0.91 21.11 29.58 -169.99 -5.03 16.09 16
20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
23 C 0.15 3.44 4.92 -3.71 -0.02 3.42 16
24 C 0.07 1.34 3.14 -26.61 -0.08 1.26 16
25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
26 O -0.57 -9.75 13.16 -35.23 -0.46 -10.21 16
27 H 0.05 0.44 6.26 -51.93 -0.33 0.11 16
28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
30 H 0.08 1.19 6.70 -51.93 -0.35 0.84 16
31 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16
32 H 0.08 0.65 5.90 -51.93 -0.31 0.35 16
33 H 0.03 0.26 8.02 -51.93 -0.42 -0.16 16
34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
36 H 0.05 0.43 6.84 -51.93 -0.36 0.07 16
37 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16
38 H 0.10 0.94 6.47 -51.93 -0.34 0.61 16
39 H 0.39 4.88 8.60 -40.82 -0.35 4.52 16
40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16
41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
43 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16
44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
45 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16
46 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
47 H 0.38 5.11 9.08 45.56 0.41 5.52 16
LS Contribution 367.29 15.07 5.53 5.53
Total: -1.00 -31.65 367.29 -8.38 -40.03
By element:
Atomic # 1 Polarization: 15.84 SS G_CDS: -7.33 Total: 8.50 kcal
Atomic # 6 Polarization: 8.10 SS G_CDS: -0.07 Total: 8.04 kcal
Atomic # 7 Polarization: -56.84 SS G_CDS: -1.11 Total: -57.95 kcal
Atomic # 8 Polarization: -19.86 SS G_CDS: -0.38 Total: -20.24 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -31.65 -8.38 -40.03 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001100048986.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.826 kcal
(2) G-P(sol) polarization free energy of solvation -31.649 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.857 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds