Wall clock time and date at job start Tue Mar 31 2020 03:26:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46904 * 109.47143 * 2 1
4 4 C 1.46900 * 110.99672 * 66.04483 * 3 2 1
5 5 C 1.53003 * 109.47067 * 198.26769 * 4 3 2
6 6 C 1.46900 * 110.99978 * 190.00010 * 3 2 1
7 7 C 1.50694 * 109.47186 * 75.99550 * 6 3 2
8 8 O 1.21285 * 119.99968 * 358.87596 * 7 6 3
9 9 N 1.34773 * 120.00012 * 178.87471 * 7 6 3
10 10 C 1.46503 * 119.99808 * 180.02562 * 9 7 6
11 11 H 1.08992 * 109.46355 * 325.02771 * 10 9 7
12 12 C 1.53040 * 109.46071 * 85.00173 * 10 9 7
13 13 C 1.53189 * 109.31314 * 181.38455 * 12 10 9
14 14 N 1.46926 * 108.77680 * 305.36413 * 13 12 10
15 15 C 1.36942 * 120.63074 * 233.63662 * 14 13 12
16 16 H 1.08002 * 120.00129 * 28.61230 * 15 14 13
17 17 C 1.38811 * 119.99900 * 208.62248 * 15 14 13
18 18 N 1.31625 * 119.99908 * 15.26985 * 17 15 14
19 19 Si 1.86795 * 120.00199 * 195.27609 * 17 15 14
20 20 H 1.48500 * 109.47120 * 59.99613 * 19 17 15
21 21 H 1.48502 * 109.47454 * 179.97438 * 19 17 15
22 22 H 1.48504 * 109.47133 * 299.99837 * 19 17 15
23 23 C 1.46921 * 118.73896 * 53.60694 * 14 13 12
24 24 C 1.53038 * 109.45843 * 205.06468 * 10 9 7
25 25 H 1.09000 * 109.50674 * 298.56943 * 24 10 9
26 26 O 1.42907 * 109.49647 * 58.66814 * 24 10 9
27 27 H 1.09007 * 109.47399 * 300.00311 * 1 2 3
28 28 H 1.09000 * 109.47116 * 59.99664 * 1 2 3
29 29 H 1.08997 * 109.47453 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.46883 * 239.99797 * 2 1 3
31 31 H 1.09002 * 109.46902 * 119.99841 * 2 1 3
32 32 H 1.08995 * 109.47439 * 318.26939 * 4 3 2
33 33 H 1.09004 * 109.47110 * 78.26925 * 4 3 2
34 34 H 1.09001 * 109.47228 * 54.15206 * 5 4 3
35 35 H 1.08993 * 109.47452 * 174.16051 * 5 4 3
36 36 H 1.09003 * 109.46999 * 294.15940 * 5 4 3
37 37 H 1.09002 * 109.46866 * 315.99861 * 6 3 2
38 38 H 1.08996 * 109.46578 * 196.00033 * 6 3 2
39 39 H 0.96995 * 120.00376 * 0.02562 * 9 7 6
40 40 H 1.08996 * 109.49519 * 301.33475 * 12 10 9
41 41 H 1.09003 * 109.49729 * 61.43136 * 12 10 9
42 42 H 1.09003 * 109.58878 * 65.15134 * 13 12 10
43 43 H 1.09006 * 109.58615 * 185.57475 * 13 12 10
44 44 H 0.96996 * 119.99996 * 179.97438 * 18 17 15
45 45 H 1.08999 * 109.58840 * 186.60689 * 23 14 13
46 46 H 1.09000 * 109.70514 * 66.25200 * 23 14 13
47 47 H 0.96701 * 113.99802 * 179.97438 * 26 24 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.6702 2.0669 1.2533
5 6 1.7734 3.5807 1.0563
6 6 3.4685 1.4311 -0.2381
7 6 3.7457 1.1836 -1.6986
8 8 2.8282 0.9678 -2.4619
9 7 5.0131 1.2021 -2.1565
10 6 5.2824 0.9620 -3.5764
11 1 4.5711 0.2321 -3.9627
12 6 5.1385 2.2737 -4.3516
13 6 5.3869 2.0123 -5.8404
14 7 6.6947 1.3607 -5.9944
15 6 7.6380 1.8807 -6.8401
16 1 7.6588 2.9421 -7.0388
17 6 8.5674 1.0436 -7.4420
18 7 8.3723 -0.2581 -7.4507
19 14 10.0951 1.7644 -8.2395
20 1 10.8840 2.5025 -7.2207
21 1 10.9216 0.6685 -8.8063
22 1 9.6945 2.6951 -9.3252
23 6 6.9715 0.1411 -5.2234
24 6 6.7054 0.4236 -3.7414
25 1 7.4189 1.1633 -3.3783
26 8 6.8478 -0.7852 -2.9925
27 1 -0.3634 0.5139 0.8900
28 1 -0.3633 0.5139 -0.8899
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 0.6505 1.8061 1.5367
33 1 2.3570 1.7552 2.0403
34 1 1.1656 3.8782 0.2018
35 1 1.4153 4.0889 1.9515
36 1 2.8131 3.8534 0.8750
37 1 3.9596 0.6636 0.3600
38 1 3.8519 2.4119 0.0434
39 1 5.7469 1.3743 -1.5461
40 1 4.1319 2.6687 -4.2145
41 1 5.8667 2.9961 -3.9826
42 1 4.6057 1.3608 -6.2323
43 1 5.3834 2.9577 -6.3830
44 1 9.0215 -0.8430 -7.8717
45 1 8.0137 -0.1482 -5.3589
46 1 6.3214 -0.6647 -5.5643
47 1 7.7271 -1.1832 -3.0517
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001100048986.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:26:12
Heat of formation + Delta-G solvation = -84.652522 kcal
Electronic energy + Delta-G solvation = -25604.044891 eV
Core-core repulsion = 22014.431864 eV
Total energy + Delta-G solvation = -3589.613027 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-41.12648 -39.66358 -38.25483 -36.88935 -35.71424 -33.96451 -32.69598 -31.81374
-30.83363 -30.41940 -27.69923 -26.44122 -24.15032 -23.91343 -23.46058 -21.83843
-21.32384 -20.87193 -18.98781 -18.12355 -18.06661 -17.47126 -16.80959 -16.63795
-16.22241 -15.83662 -15.63358 -15.53659 -15.27205 -15.01029 -14.71641 -14.48015
-14.25309 -13.88403 -13.67697 -13.40691 -13.33971 -13.08870 -13.01325 -12.79188
-12.62469 -12.56403 -12.52308 -12.36625 -12.10811 -12.03332 -11.92481 -11.84295
-11.53141 -11.37859 -10.99263 -10.68694 -10.60313 -9.97313 -9.23576 -8.75607
-7.90757 -5.40032 1.49402 1.50323 1.57905 1.76237 2.11064 2.49356
3.01459 3.12258 3.27445 3.63642 3.82489 3.95218 4.03999 4.06258
4.14809 4.27054 4.31292 4.33381 4.42445 4.45248 4.45892 4.57768
4.58562 4.71505 4.73787 4.84779 4.91084 4.94945 4.98834 5.04262
5.13823 5.15762 5.16282 5.32917 5.33825 5.43029 5.54988 5.57457
5.62675 6.01259 6.19115 6.33333 6.70277 6.82346 7.09789 7.40685
7.76665 8.30234 9.15628
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.031032 B = 0.003090 C = 0.003022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 902.084567 B = 9060.623712 C = 9264.602732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.053 3.947
3 N -0.542 5.542
4 C 0.047 3.953
5 C -0.146 4.146
6 C 0.043 3.957
7 C 0.507 3.493
8 O -0.570 6.570
9 N -0.709 5.709
10 C 0.173 3.827
11 H 0.050 0.950
12 C -0.121 4.121
13 C 0.141 3.859
14 N -0.604 5.604
15 C -0.268 4.268
16 H 0.073 0.927
17 C -0.048 4.048
18 N -0.936 5.936
19 Si 0.972 3.028
20 H -0.273 1.273
21 H -0.295 1.295
22 H -0.277 1.277
23 C 0.157 3.843
24 C 0.093 3.907
25 H 0.067 0.933
26 O -0.574 6.574
27 H 0.069 0.931
28 H 0.044 0.956
29 H 0.066 0.934
30 H 0.050 0.950
31 H 0.044 0.956
32 H 0.086 0.914
33 H 0.050 0.950
34 H 0.047 0.953
35 H 0.076 0.924
36 H 0.054 0.946
37 H 0.083 0.917
38 H 0.125 0.875
39 H 0.411 0.589
40 H 0.068 0.932
41 H 0.075 0.925
42 H 0.006 0.994
43 H 0.066 0.934
44 H 0.252 0.748
45 H 0.072 0.928
46 H -0.008 1.008
47 H 0.392 0.608
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.903 4.374 20.947 22.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.075 4.075
3 N -0.268 5.268
4 C -0.079 4.079
5 C -0.204 4.204
6 C -0.088 4.088
7 C 0.294 3.706
8 O -0.448 6.448
9 N -0.361 5.361
10 C 0.068 3.932
11 H 0.068 0.932
12 C -0.161 4.161
13 C 0.015 3.985
14 N -0.329 5.329
15 C -0.398 4.398
16 H 0.090 0.910
17 C -0.244 4.244
18 N -0.582 5.582
19 Si 0.800 3.200
20 H -0.198 1.198
21 H -0.221 1.221
22 H -0.203 1.203
23 C 0.030 3.970
24 C 0.032 3.968
25 H 0.084 0.916
26 O -0.380 6.380
27 H 0.088 0.912
28 H 0.063 0.937
29 H 0.085 0.915
30 H 0.068 0.932
31 H 0.062 0.938
32 H 0.104 0.896
33 H 0.068 0.932
34 H 0.066 0.934
35 H 0.095 0.905
36 H 0.073 0.927
37 H 0.101 0.899
38 H 0.143 0.857
39 H 0.247 0.753
40 H 0.086 0.914
41 H 0.093 0.907
42 H 0.024 0.976
43 H 0.085 0.915
44 H 0.061 0.939
45 H 0.090 0.910
46 H 0.010 0.990
47 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges -9.331 4.467 20.110 22.615
hybrid contribution 2.021 -0.656 -0.459 2.174
sum -7.310 3.811 19.651 21.311
Atomic orbital electron populations
1.21737 0.93964 1.01997 1.02077 1.22062 0.97070 0.88353 0.99968
1.61607 1.11885 1.16902 1.36405 1.22252 1.01937 0.94983 0.88776
1.21789 1.01951 0.94507 1.02142 1.21982 0.90542 1.05019 0.91248
1.21234 0.82081 0.75683 0.91605 1.90676 1.45093 1.49483 1.59539
1.45885 1.08454 1.72383 1.09350 1.20554 0.94822 0.96287 0.81579
0.93202 1.22176 1.01551 0.96485 0.95876 1.21040 0.86604 0.96510
0.94305 1.44237 1.11865 1.28774 1.48040 1.19538 1.07990 0.92031
1.20213 0.90956 1.25890 1.03455 0.95833 0.99184 1.70170 1.36347
1.03520 1.48123 0.85272 0.79263 0.77032 0.78432 1.19847 1.22119
1.20316 1.21225 1.00373 0.87556 0.87857 1.22549 0.95406 0.86391
0.92433 0.91550 1.86391 1.39112 1.40798 1.71719 0.91167 0.93684
0.91489 0.93174 0.93761 0.89616 0.93217 0.93421 0.90505 0.92673
0.89915 0.85710 0.75274 0.91370 0.90660 0.97618 0.91535 0.93897
0.90992 0.98981 0.75919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.67 9.88 71.98 0.71 -1.96 16
2 C 0.05 1.16 5.29 86.30 0.46 1.62 16
3 N -0.54 -11.65 4.01 -900.79 -3.61 -15.26 16
4 C 0.05 0.70 5.55 86.30 0.48 1.18 16
5 C -0.15 -2.02 9.92 71.98 0.71 -1.31 16
6 C 0.04 0.86 5.31 85.56 0.45 1.32 16
7 C 0.51 14.97 7.48 87.66 0.66 15.63 16
8 O -0.57 -22.30 14.86 -3.04 -0.05 -22.34 16
9 N -0.71 -19.98 4.92 -442.42 -2.18 -22.15 16
10 C 0.17 6.25 2.12 45.02 0.10 6.35 16
11 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16
12 C -0.12 -4.34 5.65 30.67 0.17 -4.17 16
13 C 0.14 6.13 6.52 86.36 0.56 6.69 16
14 N -0.60 -30.22 2.99 -699.09 -2.09 -32.31 16
15 C -0.27 -14.40 9.59 84.03 0.81 -13.59 16
16 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16
17 C -0.05 -2.61 4.96 84.86 0.42 -2.19 16
18 N -0.94 -54.24 11.13 21.65 0.24 -54.00 16
19 Si 0.97 43.44 29.58 68.60 2.03 45.47 16
20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16
22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16
23 C 0.16 7.47 4.92 86.37 0.42 7.89 16
24 C 0.09 3.42 3.14 30.67 0.10 3.52 16
25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
26 O -0.57 -18.91 13.16 -148.98 -1.96 -20.87 16
27 H 0.07 1.05 6.26 -2.38 -0.01 1.04 16
28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
29 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16
30 H 0.05 1.44 6.70 -2.39 -0.02 1.42 16
31 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16
32 H 0.09 1.16 5.90 -2.39 -0.01 1.14 16
33 H 0.05 0.59 8.02 -2.39 -0.02 0.57 16
34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
36 H 0.05 0.72 6.84 -2.39 -0.02 0.71 16
37 H 0.08 1.35 8.00 -2.39 -0.02 1.34 16
38 H 0.13 1.88 6.47 -2.39 -0.02 1.87 16
39 H 0.41 8.94 8.60 -92.71 -0.80 8.14 16
40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16
41 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16
42 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16
43 H 0.07 2.75 7.93 -2.38 -0.02 2.73 16
44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16
45 H 0.07 3.73 6.04 -2.39 -0.01 3.72 16
46 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16
47 H 0.39 10.17 9.08 -74.06 -0.67 9.50 16
Total: -1.00 -70.50 367.29 -2.07 -72.57
By element:
Atomic # 1 Polarization: 28.44 SS G_CDS: -0.50 Total: 27.94 kcal
Atomic # 6 Polarization: 14.92 SS G_CDS: 6.05 Total: 20.97 kcal
Atomic # 7 Polarization: -116.09 SS G_CDS: -7.64 Total: -123.73 kcal
Atomic # 8 Polarization: -41.21 SS G_CDS: -2.01 Total: -43.21 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal
Total: -70.50 -2.07 -72.57 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001100048986.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.087 kcal
(2) G-P(sol) polarization free energy of solvation -70.495 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.583 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds