Wall clock time and date at job start Tue Mar 31 2020 03:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47569 * 2 1 4 4 C 1.46898 * 111.00003 * 66.04379 * 3 2 1 5 5 C 1.46905 * 111.00205 * 190.00145 * 3 2 1 6 6 C 1.52997 * 109.47149 * 169.99513 * 5 3 2 7 7 C 1.50702 * 109.47051 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00036 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00079 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00116 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46140 * 324.97090 * 10 9 7 12 12 C 1.53037 * 109.44920 * 84.93990 * 10 9 7 13 13 C 1.53194 * 109.31546 * 58.64819 * 12 10 9 14 14 N 1.46926 * 108.77264 * 54.63474 * 13 12 10 15 15 C 1.36941 * 120.63170 * 126.41601 * 14 13 12 16 16 H 1.08001 * 119.99840 * 207.67501 * 15 14 13 17 17 C 1.38808 * 119.99743 * 27.67008 * 15 14 13 18 18 N 1.31615 * 119.99919 * 17.36296 * 17 15 14 19 19 Si 1.86803 * 119.99890 * 197.35495 * 17 15 14 20 20 H 1.48502 * 109.46880 * 60.00728 * 19 17 15 21 21 H 1.48501 * 109.47157 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47242 * 300.00464 * 19 17 15 23 23 C 1.46930 * 118.73909 * 306.39072 * 14 13 12 24 24 C 1.53039 * 109.45822 * 205.00054 * 10 9 7 25 25 H 1.09001 * 109.49524 * 181.40527 * 24 10 9 26 26 O 1.42904 * 109.49752 * 61.31245 * 24 10 9 27 27 H 1.09002 * 109.46669 * 59.99709 * 1 2 3 28 28 H 1.08997 * 109.47077 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47012 * 300.00438 * 1 2 3 30 30 H 1.09002 * 109.47012 * 239.99562 * 2 1 3 31 31 H 1.09000 * 109.47380 * 120.00104 * 2 1 3 32 32 H 1.08999 * 109.46699 * 183.95544 * 4 3 2 33 33 H 1.08994 * 109.46993 * 303.95199 * 4 3 2 34 34 H 1.08999 * 109.47341 * 63.95993 * 4 3 2 35 35 H 1.09004 * 109.46908 * 49.99819 * 5 3 2 36 36 H 1.08995 * 109.46953 * 289.99979 * 5 3 2 37 37 H 1.09004 * 109.46965 * 60.00342 * 6 5 3 38 38 H 1.08995 * 109.47573 * 300.00087 * 6 5 3 39 39 H 0.97006 * 119.99436 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.49949 * 298.69740 * 12 10 9 41 41 H 1.09007 * 109.49796 * 178.59963 * 12 10 9 42 42 H 1.08996 * 109.58426 * 294.84952 * 13 12 10 43 43 H 1.08998 * 109.58505 * 174.41995 * 13 12 10 44 44 H 0.97007 * 119.99487 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.58472 * 173.39269 * 23 14 13 46 46 H 1.08994 * 109.58704 * 293.81951 * 23 14 13 47 47 H 0.96700 * 114.00099 * 180.15960 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4686 1.4310 -0.2382 6 6 3.9001 2.8790 -0.4792 7 6 5.3865 2.9263 -0.7230 8 8 6.0367 1.9026 -0.7060 9 7 5.9933 4.1062 -0.9598 10 6 7.4382 4.1521 -1.1972 11 1 7.9310 3.3963 -0.5856 12 6 7.7207 3.8753 -2.6756 13 6 6.9984 4.9188 -3.5336 14 7 7.3978 6.2593 -3.0836 15 6 7.8951 7.1743 -3.9728 16 1 8.5772 7.9404 -3.6345 17 6 7.5228 7.1172 -5.3087 18 7 6.4584 6.4305 -5.6664 19 14 8.5322 8.0150 -6.5989 20 1 9.9223 7.4927 -6.5914 21 1 7.9288 7.7984 -7.9384 22 1 8.5475 9.4680 -6.2925 23 6 7.2529 6.5995 -1.6616 24 6 7.9723 5.5370 -0.8247 25 1 9.0429 5.5799 -1.0247 26 8 7.7355 5.7821 0.5631 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.9826 3.1098 1.1986 33 1 0.5921 2.0180 1.4051 34 1 2.1770 1.5791 2.0859 35 1 3.7123 0.8288 -1.1135 36 1 3.9926 1.0358 0.6320 37 1 3.6564 3.4812 0.3961 38 1 3.3761 3.2742 -1.3494 39 1 5.4733 4.9249 -0.9729 40 1 7.3609 2.8794 -2.9345 41 1 8.7937 3.9338 -2.8582 42 1 5.9206 4.8017 -3.4211 43 1 7.2753 4.7869 -4.5795 44 1 6.1980 6.3909 -6.6000 45 1 7.6977 7.5764 -1.4725 46 1 6.1958 6.6194 -1.3966 47 1 8.0470 6.6450 0.8689 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100064678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:35 Heat of formation + Delta-G solvation = -86.951576 kcal Electronic energy + Delta-G solvation = -25532.359773 eV Core-core repulsion = 21942.647051 eV Total energy + Delta-G solvation = -3589.712721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26329 -39.58534 -38.53690 -36.93560 -35.56924 -33.70130 -33.20571 -31.82898 -30.48845 -29.90018 -27.68864 -27.06449 -24.41313 -23.77376 -23.47608 -21.94198 -21.34341 -20.27965 -18.85714 -18.38296 -17.95754 -17.03826 -16.87506 -16.72385 -16.41744 -16.08306 -15.78856 -15.55687 -15.28302 -15.06631 -14.81074 -14.47616 -14.32654 -13.90209 -13.59305 -13.50333 -13.25200 -13.08829 -12.99636 -12.80148 -12.70588 -12.67563 -12.37242 -12.26943 -12.21046 -11.97786 -11.86070 -11.83151 -11.74314 -11.28965 -11.02953 -10.82073 -10.49562 -9.99406 -9.33744 -8.70354 -7.88439 -5.34242 1.48427 1.51372 1.57231 1.69366 2.19692 2.50283 3.01337 3.17159 3.27862 3.67140 3.82215 3.88091 3.98400 4.06823 4.12431 4.18099 4.26344 4.31669 4.38780 4.53389 4.55978 4.57826 4.62464 4.63471 4.69884 4.88521 4.90467 4.93789 4.97078 5.00931 5.03954 5.06062 5.14108 5.14951 5.37921 5.42091 5.56355 5.63818 5.71022 6.03653 6.11801 6.36019 6.59901 6.89082 7.12783 7.28885 7.81913 8.32884 9.17493 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.003390 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.581610 B = 8258.447740 C = 9082.242156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.552 5.552 4 C 0.015 3.985 5 C 0.080 3.920 6 C -0.126 4.126 7 C 0.512 3.488 8 O -0.589 6.589 9 N -0.702 5.702 10 C 0.168 3.832 11 H 0.072 0.928 12 C -0.140 4.140 13 C 0.186 3.814 14 N -0.602 5.602 15 C -0.266 4.266 16 H 0.072 0.928 17 C -0.046 4.046 18 N -0.930 5.930 19 Si 0.965 3.035 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.274 1.274 23 C 0.119 3.881 24 C 0.096 3.904 25 H 0.068 0.932 26 O -0.570 6.570 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.407 0.593 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.006 0.994 43 H 0.053 0.947 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.027 0.973 47 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -6.333 14.061 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.277 5.277 4 C -0.133 4.133 5 C -0.048 4.048 6 C -0.166 4.166 7 C 0.300 3.700 8 O -0.470 6.470 9 N -0.353 5.353 10 C 0.063 3.937 11 H 0.090 0.910 12 C -0.180 4.180 13 C 0.060 3.940 14 N -0.327 5.327 15 C -0.396 4.396 16 H 0.090 0.910 17 C -0.242 4.242 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.206 1.206 21 H -0.224 1.224 22 H -0.199 1.199 23 C -0.007 4.007 24 C 0.035 3.965 25 H 0.086 0.914 26 O -0.377 6.377 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.243 0.757 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.024 0.976 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -7.486 -7.387 13.521 17.130 hybrid contribution 0.948 0.869 -0.492 1.377 sum -6.538 -6.518 13.030 15.969 Atomic orbital electron populations 1.21768 0.93432 1.02378 1.02458 1.22156 0.97173 0.88069 1.00756 1.62018 1.12778 1.16964 1.35923 1.22571 1.02268 0.99529 0.88898 1.21639 0.87281 0.95268 1.00615 1.21567 0.89959 0.99473 1.05635 1.21100 0.91084 0.82822 0.75021 1.90639 1.67965 1.34641 1.53762 1.45933 1.08798 1.09654 1.70909 1.20663 0.81363 0.96478 0.95240 0.91024 1.22386 1.01336 0.99255 0.95038 1.20475 0.94248 0.82535 0.96753 1.44174 1.74932 1.10348 1.03214 1.19467 1.20099 1.10259 0.89753 0.91047 1.25758 0.97222 1.00879 1.00365 1.70170 1.24634 1.46417 1.16338 0.85386 0.78411 0.78737 0.78150 1.20608 1.22372 1.19950 1.21671 0.97666 0.96967 0.84430 1.22333 0.98758 0.94137 0.81310 0.91427 1.86450 1.85604 1.42180 1.23507 0.92418 0.91039 0.92037 0.91231 0.94794 0.90615 0.89823 0.95643 0.91583 0.95093 0.86890 0.87509 0.75675 0.92487 0.91430 0.97634 0.92875 0.94135 0.91289 0.95483 0.75488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.84 71.98 0.71 -1.34 16 2 C 0.05 0.84 5.68 86.30 0.49 1.33 16 3 N -0.55 -11.53 4.76 -922.47 -4.39 -15.93 16 4 C 0.02 0.25 9.13 127.69 1.17 1.42 16 5 C 0.08 1.99 4.25 86.30 0.37 2.36 16 6 C -0.13 -3.10 5.62 29.85 0.17 -2.93 16 7 C 0.51 16.58 7.79 87.66 0.68 17.26 16 8 O -0.59 -23.07 15.64 -3.03 -0.05 -23.12 16 9 N -0.70 -22.70 4.15 -442.42 -1.84 -24.54 16 10 C 0.17 5.86 2.47 45.02 0.11 5.98 16 11 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 12 C -0.14 -5.52 5.77 30.67 0.18 -5.34 16 13 C 0.19 8.69 5.05 86.36 0.44 9.13 16 14 N -0.60 -28.06 2.99 -699.11 -2.09 -30.16 16 15 C -0.27 -13.78 9.59 84.03 0.81 -12.97 16 16 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 17 C -0.05 -2.48 4.91 84.86 0.42 -2.07 16 18 N -0.93 -53.32 11.19 21.65 0.24 -53.08 16 19 Si 0.96 43.44 29.59 68.60 2.03 45.47 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.12 4.33 5.84 86.36 0.50 4.83 16 24 C 0.10 3.02 3.36 30.67 0.10 3.12 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 O -0.57 -15.11 13.21 -148.98 -1.97 -17.08 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.79 6.47 -2.39 -0.02 0.78 16 30 H 0.07 1.33 7.93 -2.39 -0.02 1.31 16 31 H 0.03 0.60 8.12 -2.39 -0.02 0.58 16 32 H 0.08 1.19 6.47 -2.39 -0.02 1.17 16 33 H 0.08 1.17 6.30 -2.39 -0.02 1.16 16 34 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 1.83 7.89 -2.39 -0.02 1.82 16 36 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 37 H 0.11 2.25 6.55 -2.39 -0.02 2.24 16 38 H 0.11 2.57 8.14 -2.39 -0.02 2.56 16 39 H 0.41 12.38 6.87 -92.70 -0.64 11.75 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 42 H 0.01 0.27 7.74 -2.39 -0.02 0.26 16 43 H 0.05 2.88 6.04 -2.39 -0.01 2.86 16 44 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 45 H 0.07 2.36 7.93 -2.39 -0.02 2.35 16 46 H 0.03 0.98 6.64 -2.39 -0.02 0.97 16 47 H 0.40 6.87 9.08 -74.06 -0.67 6.20 16 Total: -1.00 -65.77 365.04 -2.27 -68.04 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.34 Total: 29.61 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 6.14 Total: 20.79 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -8.08 Total: -123.70 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -2.02 Total: -40.20 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.77 -2.27 -68.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100064678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.911 kcal (2) G-P(sol) polarization free energy of solvation -65.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds