Wall clock time and date at job start Tue Mar 31 2020 03:46:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.42900 * 114.00125 * 2 1
4 4 C 1.52997 * 109.47276 * 180.02562 * 3 2 1
5 5 N 1.46900 * 109.47217 * 64.99654 * 4 3 2
6 6 C 1.48531 * 111.00514 * 307.39964 * 5 4 3
7 7 C 1.54934 * 103.23106 * 200.27736 * 6 5 4
8 8 C 1.54601 * 102.91952 * 37.41479 * 7 6 5
9 9 H 1.08994 * 110.39447 * 97.00266 * 8 7 6
10 10 N 1.46499 * 110.30936 * 219.12835 * 8 7 6
11 11 C 1.34777 * 119.99933 * 270.71757 * 10 8 7
12 12 O 1.21281 * 120.00134 * 359.97438 * 11 10 8
13 13 C 1.50700 * 119.99895 * 179.97438 * 11 10 8
14 14 H 1.08993 * 109.47230 * 40.00087 * 13 11 10
15 15 N 1.46904 * 109.46959 * 159.99844 * 13 11 10
16 16 C 1.52992 * 109.47297 * 279.99574 * 13 11 10
17 17 C 1.53004 * 109.47319 * 175.00095 * 16 13 11
18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 13
19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16
20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16
21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17
23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18
24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18
25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18
26 26 C 1.47902 * 111.00072 * 189.99829 * 5 4 3
27 27 H 1.08995 * 109.47320 * 59.99970 * 1 2 3
28 28 H 1.09002 * 109.46953 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.46506 * 299.99545 * 1 2 3
30 30 H 1.08997 * 109.46610 * 60.00153 * 3 2 1
31 31 H 1.09003 * 109.47090 * 300.00389 * 3 2 1
32 32 H 1.09003 * 109.46747 * 305.00301 * 4 3 2
33 33 H 1.08995 * 109.47286 * 184.99950 * 4 3 2
34 34 H 1.09010 * 110.66517 * 318.71634 * 6 5 4
35 35 H 1.09000 * 110.66928 * 81.67034 * 6 5 4
36 36 H 1.09000 * 110.72664 * 279.05920 * 7 6 5
37 37 H 1.09000 * 110.72422 * 155.77002 * 7 6 5
38 38 H 0.97007 * 120.00179 * 90.70744 * 10 8 7
39 39 H 1.00905 * 110.99690 * 296.04572 * 15 13 11
40 40 H 1.00897 * 110.99892 * 59.99909 * 15 13 11
41 41 H 1.09000 * 109.47364 * 55.00114 * 16 13 11
42 42 H 1.08998 * 109.47610 * 295.00177 * 16 13 11
43 43 H 1.08994 * 109.47074 * 60.00408 * 17 16 13
44 44 H 1.08998 * 109.47285 * 300.00244 * 17 16 13
45 45 H 0.97005 * 119.99661 * 359.97438 * 21 20 18
46 46 H 1.09005 * 109.91543 * 26.49934 * 26 5 4
47 47 H 1.08994 * 109.92065 * 265.20471 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 7 3.9769 0.5626 -1.2561
6 6 3.2573 -0.7136 -1.4998
7 6 4.1763 -1.4527 -2.5046
8 6 5.5945 -1.0824 -2.0128
9 1 5.9962 -1.8745 -1.3809
10 7 6.4821 -0.8438 -3.1536
11 6 7.1760 -1.8656 -3.6929
12 8 7.0659 -2.9826 -3.2335
13 6 8.0886 -1.6202 -4.8667
14 1 8.6160 -0.6769 -4.7259
15 7 9.0625 -2.7154 -4.9672
16 6 7.2606 -1.5547 -6.1516
17 6 8.1688 -1.1824 -7.3252
18 6 7.3530 -1.1173 -8.5907
19 1 6.2928 -1.3206 -8.5607
20 6 7.9602 -0.7981 -9.7866
21 7 9.2514 -0.5509 -9.8232
22 14 6.9490 -0.7166 -11.3552
23 1 7.8305 -0.3554 -12.4943
24 1 6.3254 -2.0398 -11.6113
25 1 5.8870 0.3107 -11.2066
26 6 5.4124 0.2113 -1.1975
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3632 0.5138 0.8901
30 1 1.6887 1.8463 0.8900
31 1 1.6886 1.8464 -0.8900
32 1 3.8515 0.5681 0.8409
33 1 3.9786 2.1764 0.0889
34 1 3.1609 -1.2835 -0.5755
35 1 2.2771 -0.5251 -1.9378
36 1 4.0121 -1.0874 -3.5183
37 1 4.0186 -2.5299 -2.4513
38 1 6.5704 0.0497 -3.5209
39 1 9.6647 -2.7391 -4.1579
40 1 8.5979 -3.6015 -5.0982
41 1 6.4802 -0.8015 -6.0429
42 1 6.8039 -2.5264 -6.3396
43 1 8.9491 -1.9356 -7.4340
44 1 8.6254 -0.2107 -7.1373
45 1 9.7765 -0.5928 -9.0087
46 1 5.7117 0.0433 -0.1629
47 1 6.0089 1.0124 -1.6340
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118134424.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:46:14
Heat of formation + Delta-G solvation = -88.740234 kcal
Electronic energy + Delta-G solvation = -24702.436432 eV
Core-core repulsion = 21112.646148 eV
Total energy + Delta-G solvation = -3589.790283 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.25570 -39.18672 -37.77945 -35.35821 -34.58068 -33.02324 -31.92591 -29.94455
-29.28005 -28.17434 -26.59434 -25.82686 -23.46534 -23.02741 -21.22870 -21.10249
-20.69236 -19.89849 -17.37859 -17.07752 -16.95227 -16.56317 -16.16940 -15.76970
-15.45491 -15.16500 -14.68463 -14.51557 -14.38800 -13.86650 -13.65291 -13.56204
-13.09909 -12.95847 -12.73338 -12.29253 -12.22523 -12.08395 -12.02348 -11.83283
-11.54796 -11.46773 -11.15540 -10.94235 -10.78967 -10.70501 -10.22337 -10.06036
-10.02830 -9.91782 -9.64884 -9.05791 -8.70443 -8.49160 -8.32584 -8.19206
-6.25960 -3.94175 2.74770 3.23170 3.36179 3.49157 3.51568 3.67077
3.70044 4.30614 4.47579 4.62211 4.73620 4.80958 4.83763 4.88853
4.93740 4.98482 5.02265 5.08134 5.15709 5.24336 5.25411 5.33542
5.39742 5.45280 5.49575 5.52179 5.64369 5.76935 5.84828 5.91687
6.05807 6.35645 6.49656 6.55552 6.60642 6.69641 6.72346 6.97358
7.32486 7.54305 7.59244 7.73036 7.77085 8.30332 8.33052 8.57871
8.99705 9.77701 11.15120
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.016598 B = 0.002810 C = 0.002543
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1686.550553 B = 9961.108451 C =11006.866894
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.388 6.388
3 C 0.059 3.941
4 C 0.047 3.953
5 N -0.516 5.516
6 C 0.053 3.947
7 C -0.140 4.140
8 C 0.135 3.865
9 H 0.091 0.909
10 N -0.721 5.721
11 C 0.485 3.515
12 O -0.554 6.554
13 C 0.077 3.923
14 H 0.096 0.904
15 N -0.809 5.809
16 C -0.087 4.087
17 C 0.019 3.981
18 C -0.603 4.603
19 H 0.045 0.955
20 C 0.014 3.986
21 N -0.914 5.914
22 Si 1.067 2.933
23 H -0.283 1.283
24 H -0.289 1.289
25 H -0.289 1.289
26 C 0.030 3.970
27 H 0.042 0.958
28 H 0.085 0.915
29 H 0.039 0.961
30 H 0.054 0.946
31 H 0.061 0.939
32 H 0.044 0.956
33 H 0.091 0.909
34 H 0.054 0.946
35 H 0.088 0.912
36 H 0.080 0.920
37 H 0.074 0.926
38 H 0.404 0.596
39 H 0.334 0.666
40 H 0.348 0.652
41 H 0.055 0.945
42 H 0.054 0.946
43 H 0.026 0.974
44 H 0.003 0.997
45 H 0.270 0.730
46 H 0.053 0.947
47 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.704 4.177 23.576 27.587
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.307 6.307
3 C -0.017 4.017
4 C -0.081 4.081
5 N -0.241 5.241
6 C -0.075 4.075
7 C -0.179 4.179
8 C 0.029 3.971
9 H 0.109 0.891
10 N -0.374 5.374
11 C 0.271 3.729
12 O -0.432 6.432
13 C -0.039 4.039
14 H 0.114 0.886
15 N -0.337 5.337
16 C -0.125 4.125
17 C -0.019 4.019
18 C -0.642 4.642
19 H 0.063 0.937
20 C -0.189 4.189
21 N -0.551 5.551
22 Si 0.896 3.104
23 H -0.208 1.208
24 H -0.216 1.216
25 H -0.216 1.216
26 C -0.098 4.098
27 H 0.061 0.939
28 H 0.103 0.897
29 H 0.057 0.943
30 H 0.072 0.928
31 H 0.079 0.921
32 H 0.062 0.938
33 H 0.109 0.891
34 H 0.073 0.927
35 H 0.106 0.894
36 H 0.098 0.902
37 H 0.093 0.907
38 H 0.239 0.761
39 H 0.146 0.854
40 H 0.162 0.838
41 H 0.074 0.926
42 H 0.073 0.927
43 H 0.044 0.956
44 H 0.021 0.979
45 H 0.081 0.919
46 H 0.072 0.928
47 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -13.393 4.260 21.211 25.445
hybrid contribution -0.741 -0.491 3.195 3.317
sum -14.135 3.769 24.406 28.455
Atomic orbital electron populations
1.22733 0.81249 1.02798 0.99945 1.88035 1.19614 1.27692 1.95331
1.22564 0.93253 0.85165 1.00753 1.22368 0.93707 1.00692 0.91332
1.64881 1.03009 1.24272 1.31924 1.23236 0.97544 0.88622 0.98085
1.23032 0.93776 1.00691 1.00394 1.21740 0.90556 0.96872 0.87948
0.89094 1.46259 1.45443 1.12235 1.33419 1.22676 0.80696 0.84571
0.85007 1.90639 1.66305 1.23190 1.63071 1.21840 0.92182 0.96958
0.92926 0.88563 1.59014 1.21949 1.07558 1.45154 1.21501 0.97660
1.01068 0.92315 1.19129 0.95136 0.95932 0.91657 1.22087 0.95995
1.51914 0.94178 0.93666 1.25783 0.97281 0.93935 1.01924 1.70759
1.06288 1.45948 1.32081 0.83578 0.74825 0.76390 0.75644 1.20843
1.21554 1.21578 1.23139 0.90492 0.97003 0.99205 0.93909 0.89653
0.94273 0.92802 0.92122 0.93751 0.89119 0.92741 0.89351 0.90153
0.90703 0.76063 0.85426 0.83776 0.92619 0.92745 0.95586 0.97857
0.91925 0.92824 0.89549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.17 11.01 101.05 1.11 1.29 16
2 O -0.39 -3.26 6.98 -35.23 -0.25 -3.50 16
3 C 0.06 0.42 5.99 37.16 0.22 0.64 16
4 C 0.05 0.36 5.60 -3.83 -0.02 0.34 16
5 N -0.52 -4.97 5.40 -230.45 -1.24 -6.21 16
6 C 0.05 0.54 4.69 -1.90 -0.01 0.53 16
7 C -0.14 -1.66 6.78 -24.87 -0.17 -1.83 16
8 C 0.13 1.57 3.34 -66.57 -0.22 1.35 16
9 H 0.09 1.18 7.56 -51.93 -0.39 0.79 16
10 N -0.72 -9.17 5.06 -52.49 -0.27 -9.44 16
11 C 0.48 7.68 7.07 -10.99 -0.08 7.60 16
12 O -0.55 -10.27 15.90 5.56 0.09 -10.18 16
13 C 0.08 1.30 3.15 -68.87 -0.22 1.08 16
14 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16
15 N -0.81 -13.73 8.44 -5.66 -0.05 -13.78 16
16 C -0.09 -1.80 4.78 -26.73 -0.13 -1.92 16
17 C 0.02 0.48 4.17 -27.88 -0.12 0.36 16
18 C -0.60 -17.48 9.11 -34.44 -0.31 -17.79 16
19 H 0.04 1.29 7.74 -52.49 -0.41 0.89 16
20 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16
21 N -0.91 -28.54 13.65 55.43 0.76 -27.78 16
22 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16
23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16
24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
26 C 0.03 0.28 6.47 -2.75 -0.02 0.26 16
27 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16
28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16
30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16
31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.04 0.35 7.81 -51.93 -0.41 -0.06 16
33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16
34 H 0.05 0.58 7.19 -51.92 -0.37 0.21 16
35 H 0.09 0.94 7.05 -51.93 -0.37 0.57 16
36 H 0.08 1.05 8.06 -51.93 -0.42 0.64 16
37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
38 H 0.40 4.52 8.35 -40.82 -0.34 4.18 16
39 H 0.33 4.91 9.06 -39.29 -0.36 4.55 16
40 H 0.35 6.06 8.58 -39.29 -0.34 5.72 16
41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16
43 H 0.03 0.71 7.62 -51.93 -0.40 0.32 16
44 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16
45 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16
46 H 0.05 0.46 7.57 -51.93 -0.39 0.06 16
47 H 0.09 0.76 7.65 -51.93 -0.40 0.37 16
LS Contribution 375.15 15.07 5.65 5.65
Total: -1.00 -33.80 375.15 -8.76 -42.55
By element:
Atomic # 1 Polarization: 18.04 SS G_CDS: -8.32 Total: 9.72 kcal
Atomic # 6 Polarization: -7.71 SS G_CDS: -0.05 Total: -7.76 kcal
Atomic # 7 Polarization: -56.41 SS G_CDS: -0.80 Total: -57.21 kcal
Atomic # 8 Polarization: -13.53 SS G_CDS: -0.16 Total: -13.68 kcal
Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -33.80 -8.76 -42.55 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118134424.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.186 kcal
(2) G-P(sol) polarization free energy of solvation -33.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.983 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.740 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds