Wall clock time and date at job start Tue Mar 31 2020 03:46:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.42900 * 114.00125 * 2 1
4 4 C 1.52997 * 109.47276 * 180.02562 * 3 2 1
5 5 N 1.46900 * 109.47217 * 64.99654 * 4 3 2
6 6 C 1.48531 * 111.00514 * 307.39964 * 5 4 3
7 7 C 1.54934 * 103.23106 * 200.27736 * 6 5 4
8 8 C 1.54601 * 102.91952 * 37.41479 * 7 6 5
9 9 H 1.08994 * 110.39447 * 97.00266 * 8 7 6
10 10 N 1.46499 * 110.30936 * 219.12835 * 8 7 6
11 11 C 1.34777 * 119.99933 * 270.71757 * 10 8 7
12 12 O 1.21281 * 120.00134 * 359.97438 * 11 10 8
13 13 C 1.50700 * 119.99895 * 179.97438 * 11 10 8
14 14 H 1.08993 * 109.47230 * 40.00087 * 13 11 10
15 15 N 1.46904 * 109.46959 * 159.99844 * 13 11 10
16 16 C 1.52992 * 109.47297 * 279.99574 * 13 11 10
17 17 C 1.53004 * 109.47319 * 175.00095 * 16 13 11
18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 13
19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16
20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16
21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17
23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18
24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18
25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18
26 26 C 1.47902 * 111.00072 * 189.99829 * 5 4 3
27 27 H 1.08995 * 109.47320 * 59.99970 * 1 2 3
28 28 H 1.09002 * 109.46953 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.46506 * 299.99545 * 1 2 3
30 30 H 1.08997 * 109.46610 * 60.00153 * 3 2 1
31 31 H 1.09003 * 109.47090 * 300.00389 * 3 2 1
32 32 H 1.09003 * 109.46747 * 305.00301 * 4 3 2
33 33 H 1.08995 * 109.47286 * 184.99950 * 4 3 2
34 34 H 1.09010 * 110.66517 * 318.71634 * 6 5 4
35 35 H 1.09000 * 110.66928 * 81.67034 * 6 5 4
36 36 H 1.09000 * 110.72664 * 279.05920 * 7 6 5
37 37 H 1.09000 * 110.72422 * 155.77002 * 7 6 5
38 38 H 0.97007 * 120.00179 * 90.70744 * 10 8 7
39 39 H 1.00905 * 110.99690 * 296.04572 * 15 13 11
40 40 H 1.00897 * 110.99892 * 59.99909 * 15 13 11
41 41 H 1.09000 * 109.47364 * 55.00114 * 16 13 11
42 42 H 1.08998 * 109.47610 * 295.00177 * 16 13 11
43 43 H 1.08994 * 109.47074 * 60.00408 * 17 16 13
44 44 H 1.08998 * 109.47285 * 300.00244 * 17 16 13
45 45 H 0.97005 * 119.99661 * 359.97438 * 21 20 18
46 46 H 1.09005 * 109.91543 * 26.49934 * 26 5 4
47 47 H 1.08994 * 109.92065 * 265.20471 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 7 3.9769 0.5626 -1.2561
6 6 3.2573 -0.7136 -1.4998
7 6 4.1763 -1.4527 -2.5046
8 6 5.5945 -1.0824 -2.0128
9 1 5.9962 -1.8745 -1.3809
10 7 6.4821 -0.8438 -3.1536
11 6 7.1760 -1.8656 -3.6929
12 8 7.0659 -2.9826 -3.2335
13 6 8.0886 -1.6202 -4.8667
14 1 8.6160 -0.6769 -4.7259
15 7 9.0625 -2.7154 -4.9672
16 6 7.2606 -1.5547 -6.1516
17 6 8.1688 -1.1824 -7.3252
18 6 7.3530 -1.1173 -8.5907
19 1 6.2928 -1.3206 -8.5607
20 6 7.9602 -0.7981 -9.7866
21 7 9.2514 -0.5509 -9.8232
22 14 6.9490 -0.7166 -11.3552
23 1 7.8305 -0.3554 -12.4943
24 1 6.3254 -2.0398 -11.6113
25 1 5.8870 0.3107 -11.2066
26 6 5.4124 0.2113 -1.1975
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3632 0.5138 0.8901
30 1 1.6887 1.8463 0.8900
31 1 1.6886 1.8464 -0.8900
32 1 3.8515 0.5681 0.8409
33 1 3.9786 2.1764 0.0889
34 1 3.1609 -1.2835 -0.5755
35 1 2.2771 -0.5251 -1.9378
36 1 4.0121 -1.0874 -3.5183
37 1 4.0186 -2.5299 -2.4513
38 1 6.5704 0.0497 -3.5209
39 1 9.6647 -2.7391 -4.1579
40 1 8.5979 -3.6015 -5.0982
41 1 6.4802 -0.8015 -6.0429
42 1 6.8039 -2.5264 -6.3396
43 1 8.9491 -1.9356 -7.4340
44 1 8.6254 -0.2107 -7.1373
45 1 9.7765 -0.5928 -9.0087
46 1 5.7117 0.0433 -0.1629
47 1 6.0089 1.0124 -1.6340
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118134424.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:46:13
Heat of formation + Delta-G solvation = -115.924630 kcal
Electronic energy + Delta-G solvation = -24703.615236 eV
Core-core repulsion = 21112.646148 eV
Total energy + Delta-G solvation = -3590.969087 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.37071 -40.09072 -38.47828 -36.98829 -35.61567 -35.03757 -32.77380 -31.77681
-30.04693 -29.11755 -27.55034 -27.04087 -25.28106 -23.72932 -22.87761 -21.86705
-21.77782 -21.25508 -19.03345 -18.24987 -17.82960 -17.55167 -17.30691 -17.04237
-16.31299 -15.88181 -15.83083 -15.59858 -15.54829 -15.19160 -15.14348 -14.84778
-14.71615 -13.98019 -13.83578 -13.66382 -13.47010 -13.10966 -12.84172 -12.72714
-12.63438 -12.57248 -12.36012 -12.22599 -12.03422 -11.92985 -11.86036 -11.81599
-11.73603 -11.30723 -10.60003 -10.57063 -10.46930 -10.16159 -9.70779 -9.44076
-8.61511 -6.31111 1.44603 1.54811 1.63353 1.82496 2.10468 2.61132
2.86486 2.95230 3.22984 3.45554 3.51361 3.68059 3.80724 4.01041
4.04107 4.10270 4.21783 4.27783 4.31316 4.34649 4.41820 4.54804
4.59408 4.64248 4.65095 4.68955 4.77619 4.79567 4.87379 4.88033
4.91375 5.06879 5.09146 5.12568 5.43445 5.46468 5.63748 5.80700
5.99688 6.01973 6.07261 6.22100 6.27546 6.39604 6.47881 6.67062
7.09877 7.50051 8.79640
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.016598 B = 0.002810 C = 0.002543
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1686.550553 B = 9961.108451 C =11006.866894
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.409 6.409
3 C 0.059 3.941
4 C 0.046 3.954
5 N -0.524 5.524
6 C 0.067 3.933
7 C -0.140 4.140
8 C 0.134 3.866
9 H 0.079 0.921
10 N -0.706 5.706
11 C 0.491 3.509
12 O -0.582 6.582
13 C 0.085 3.915
14 H 0.112 0.888
15 N -0.820 5.820
16 C -0.074 4.074
17 C 0.024 3.976
18 C -0.621 4.621
19 H 0.046 0.954
20 C -0.039 4.039
21 N -0.938 5.938
22 Si 1.115 2.885
23 H -0.284 1.284
24 H -0.273 1.273
25 H -0.267 1.267
26 C 0.037 3.963
27 H 0.044 0.956
28 H 0.089 0.911
29 H 0.051 0.949
30 H 0.072 0.928
31 H 0.057 0.943
32 H 0.044 0.956
33 H 0.108 0.892
34 H 0.051 0.949
35 H 0.085 0.915
36 H 0.067 0.933
37 H 0.063 0.937
38 H 0.414 0.586
39 H 0.348 0.652
40 H 0.345 0.655
41 H 0.065 0.935
42 H 0.040 0.960
43 H 0.002 0.998
44 H -0.009 1.009
45 H 0.257 0.743
46 H 0.067 0.933
47 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.025 5.341 24.539 29.264
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.329 6.329
3 C -0.018 4.018
4 C -0.082 4.082
5 N -0.249 5.249
6 C -0.061 4.061
7 C -0.179 4.179
8 C 0.029 3.971
9 H 0.097 0.903
10 N -0.358 5.358
11 C 0.276 3.724
12 O -0.462 6.462
13 C -0.031 4.031
14 H 0.130 0.870
15 N -0.349 5.349
16 C -0.112 4.112
17 C -0.013 4.013
18 C -0.659 4.659
19 H 0.064 0.936
20 C -0.237 4.237
21 N -0.576 5.576
22 Si 0.936 3.064
23 H -0.209 1.209
24 H -0.199 1.199
25 H -0.193 1.193
26 C -0.091 4.091
27 H 0.063 0.937
28 H 0.107 0.893
29 H 0.069 0.931
30 H 0.090 0.910
31 H 0.075 0.925
32 H 0.063 0.937
33 H 0.126 0.874
34 H 0.070 0.930
35 H 0.103 0.897
36 H 0.086 0.914
37 H 0.082 0.918
38 H 0.251 0.749
39 H 0.161 0.839
40 H 0.158 0.842
41 H 0.084 0.916
42 H 0.058 0.942
43 H 0.021 0.979
44 H 0.010 0.990
45 H 0.066 0.934
46 H 0.085 0.915
47 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -14.729 5.457 22.219 27.211
hybrid contribution -0.345 -0.846 2.949 3.087
sum -15.074 4.611 25.168 29.697
Atomic orbital electron populations
1.22837 0.80201 1.03346 1.00625 1.87992 1.20866 1.28549 1.95477
1.22622 0.92868 0.84857 1.01440 1.22480 0.94230 1.01289 0.90208
1.64904 1.02936 1.23645 1.33444 1.23056 0.96989 0.88811 0.97252
1.22978 0.94507 1.00202 1.00196 1.21813 0.89848 0.98030 0.87457
0.90270 1.46154 1.44411 1.12008 1.33212 1.22291 0.80704 0.84628
0.84755 1.90635 1.67208 1.24371 1.63952 1.21628 0.92086 0.97730
0.91617 0.87035 1.58989 1.22276 1.07381 1.46220 1.21241 0.97259
1.00353 0.92364 1.18985 0.94986 0.94490 0.92837 1.22545 0.96404
1.51285 0.95654 0.93614 1.27348 0.97517 0.92992 1.05809 1.70897
1.07300 1.47966 1.31439 0.82966 0.73948 0.77732 0.71705 1.20914
1.19857 1.19250 1.23103 0.90680 0.95840 0.99474 0.93700 0.89273
0.93080 0.90980 0.92520 0.93736 0.87415 0.93047 0.89711 0.91436
0.91837 0.74878 0.83871 0.84166 0.91594 0.94151 0.97944 0.99040
0.93357 0.91512 0.88482
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 11.01 113.37 1.25 1.52 16
2 O -0.41 -6.30 6.98 -148.98 -1.04 -7.34 16
3 C 0.06 0.71 5.99 71.98 0.43 1.15 16
4 C 0.05 0.59 5.60 86.30 0.48 1.07 16
5 N -0.52 -9.08 5.40 -883.02 -4.76 -13.84 16
6 C 0.07 1.31 4.69 86.65 0.41 1.71 16
7 C -0.14 -3.24 6.78 31.80 0.22 -3.03 16
8 C 0.13 2.96 3.34 45.87 0.15 3.12 16
9 H 0.08 1.99 7.56 -2.39 -0.02 1.97 16
10 N -0.71 -16.97 5.06 -438.37 -2.22 -19.19 16
11 C 0.49 15.11 7.07 87.66 0.62 15.73 16
12 O -0.58 -21.31 15.90 -3.03 -0.05 -21.36 16
13 C 0.09 2.82 3.15 44.17 0.14 2.96 16
14 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16
15 N -0.82 -27.69 8.44 -171.81 -1.45 -29.14 16
16 C -0.07 -3.03 4.78 30.59 0.15 -2.88 16
17 C 0.02 1.26 4.17 29.85 0.12 1.39 16
18 C -0.62 -36.07 9.11 25.60 0.23 -35.84 16
19 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16
20 C -0.04 -2.32 5.46 84.65 0.46 -1.86 16
21 N -0.94 -59.24 13.65 21.45 0.29 -58.95 16
22 Si 1.12 51.22 29.90 68.60 2.05 53.27 16
23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16
24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16
26 C 0.04 0.62 6.47 86.45 0.56 1.18 16
27 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16
28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16
30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
32 H 0.04 0.59 7.81 -2.39 -0.02 0.57 16
33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.05 1.05 7.19 -2.38 -0.02 1.03 16
35 H 0.08 1.74 7.05 -2.39 -0.02 1.72 16
36 H 0.07 1.74 8.06 -2.39 -0.02 1.72 16
37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
38 H 0.41 8.42 8.35 -92.70 -0.77 7.64 16
39 H 0.35 10.00 9.06 -89.69 -0.81 9.19 16
40 H 0.34 12.08 8.58 -89.70 -0.77 11.31 16
41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16
42 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16
43 H 0.00 0.12 7.62 -2.39 -0.02 0.11 16
44 H -0.01 -0.47 8.01 -2.39 -0.02 -0.49 16
45 H 0.26 16.42 7.22 -92.70 -0.67 15.75 16
46 H 0.07 0.96 7.57 -2.38 -0.02 0.94 16
47 H 0.10 1.43 7.65 -2.39 -0.02 1.42 16
Total: -1.00 -72.44 375.15 -3.24 -75.68
By element:
Atomic # 1 Polarization: 35.92 SS G_CDS: -1.29 Total: 34.64 kcal
Atomic # 6 Polarization: -19.00 SS G_CDS: 5.22 Total: -13.78 kcal
Atomic # 7 Polarization: -112.97 SS G_CDS: -8.14 Total: -121.11 kcal
Atomic # 8 Polarization: -27.61 SS G_CDS: -1.09 Total: -28.70 kcal
Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal
Total: -72.44 -3.24 -75.68 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118134424.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.241 kcal
(2) G-P(sol) polarization free energy of solvation -72.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.240 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.684 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.925 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds