Wall clock time and date at job start Tue Mar 31 2020 03:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47244 * 2 1 4 4 C 1.36931 * 120.00265 * 276.23906 * 3 2 1 5 5 H 1.07997 * 120.00018 * 31.20782 * 4 3 2 6 6 C 1.38813 * 120.00064 * 211.20235 * 4 3 2 7 7 N 1.31618 * 119.99684 * 19.55584 * 6 4 3 8 8 Si 1.86793 * 120.00179 * 199.55147 * 6 4 3 9 9 H 1.48501 * 109.47197 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47307 * 119.99988 * 8 6 4 11 11 H 1.48502 * 109.47724 * 240.00416 * 8 6 4 12 12 C 1.46502 * 119.99612 * 96.23599 * 3 2 1 13 13 H 1.09007 * 109.46858 * 179.86489 * 12 3 2 14 14 C 1.53002 * 109.47254 * 59.86783 * 12 3 2 15 15 C 1.53001 * 109.47237 * 299.86484 * 12 3 2 16 16 N 1.46500 * 109.47156 * 304.99834 * 15 12 3 17 17 C 1.34770 * 120.00200 * 180.02562 * 16 15 12 18 18 O 1.21289 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00479 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.50356 * 31.19368 * 19 17 16 21 21 C 1.53095 * 109.50718 * 271.10869 * 19 17 16 22 22 O 1.43009 * 109.26147 * 183.16968 * 21 19 17 23 23 C 1.43014 * 113.73876 * 58.66855 * 22 21 19 24 24 C 1.53101 * 109.26010 * 301.33084 * 23 22 21 25 25 N 1.47009 * 109.54386 * 151.30277 * 19 17 16 26 26 C 1.46899 * 111.00164 * 302.34701 * 25 19 17 27 27 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47549 * 299.99979 * 1 2 3 29 29 H 1.09004 * 109.46673 * 59.99917 * 1 2 3 30 30 H 1.09003 * 109.47191 * 240.00109 * 2 1 3 31 31 H 1.09004 * 109.46673 * 120.00083 * 2 1 3 32 32 H 0.97004 * 119.99435 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46948 * 299.99651 * 14 12 3 34 34 H 1.08994 * 109.46880 * 59.99472 * 14 12 3 35 35 H 1.09002 * 109.47291 * 180.02562 * 14 12 3 36 36 H 1.09006 * 109.46689 * 185.00438 * 15 12 3 37 37 H 1.08990 * 109.47347 * 65.00185 * 15 12 3 38 38 H 0.96998 * 119.99928 * 0.02562 * 16 15 12 39 39 H 1.09001 * 109.50727 * 303.10701 * 21 19 17 40 40 H 1.09003 * 109.50839 * 63.18958 * 21 19 17 41 41 H 1.09004 * 109.50681 * 61.26730 * 23 22 21 42 42 H 1.09005 * 109.51075 * 181.39514 * 23 22 21 43 43 H 1.08996 * 109.51035 * 176.78171 * 24 23 22 44 44 H 1.08993 * 109.50589 * 296.87057 * 24 23 22 45 45 H 1.09002 * 109.47324 * 66.22699 * 26 25 19 46 46 H 1.09005 * 109.47238 * 186.22519 * 26 25 19 47 47 H 1.08999 * 109.47183 * 306.22838 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1251 2.0697 -1.1788 5 1 1.4411 1.8632 -1.9886 6 6 3.1125 3.0332 -1.3329 7 7 4.1636 3.0309 -0.5407 8 14 2.9494 4.3330 -2.6644 9 1 1.6854 4.1182 -3.4137 10 1 2.9317 5.6808 -2.0412 11 1 4.1009 4.2339 -3.5969 12 6 2.3925 2.0258 1.2613 13 1 2.7316 3.0426 1.0630 14 6 3.5200 1.2324 1.9248 15 6 1.1797 2.0652 2.1933 16 7 0.0610 2.7210 1.5115 17 6 -1.1195 2.8703 2.1442 18 8 -1.2557 2.4621 3.2782 19 6 -2.2705 3.5443 1.4427 20 1 -2.2077 3.3507 0.3718 21 6 -2.2093 5.0532 1.6939 22 8 -3.3439 5.6787 1.0883 23 6 -4.5976 5.1896 1.5725 24 6 -4.6830 3.6820 1.3200 25 7 -3.5403 3.0172 1.9632 26 6 -3.6149 1.5600 1.7927 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.8537 3.7040 -0.6487 33 1 3.1809 0.2156 2.1230 34 1 4.3839 1.2043 1.2608 35 1 3.7980 1.7117 2.8634 36 1 1.4326 2.6227 3.0952 37 1 0.8952 1.0482 2.4626 38 1 0.1700 3.0477 0.6047 39 1 -2.2180 5.2442 2.7670 40 1 -1.2950 5.4577 1.2597 41 1 -4.6758 5.3846 2.6421 42 1 -5.4110 5.6929 1.0498 43 1 -5.6120 3.2949 1.7385 44 1 -4.6596 3.4907 0.2473 45 1 -2.8624 1.0818 2.4197 46 1 -4.6056 1.2104 2.0834 47 1 -3.4320 1.3066 0.7484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152835006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:29 Heat of formation + Delta-G solvation = -48.406340 kcal Electronic energy + Delta-G solvation = -26817.414162 eV Core-core repulsion = 23229.372887 eV Total energy + Delta-G solvation = -3588.041275 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.30888 -38.55481 -36.93017 -35.56419 -33.66005 -31.96250 -31.72238 -30.83250 -28.89358 -28.18697 -25.90930 -24.29138 -24.14471 -23.96435 -21.79377 -21.01042 -19.68295 -19.22220 -17.29386 -16.79399 -16.46777 -16.28694 -15.74387 -15.16556 -14.93736 -14.64388 -14.57676 -14.11464 -13.89481 -13.79352 -13.47300 -12.84069 -12.75625 -12.51183 -12.35752 -12.33633 -11.96530 -11.87178 -11.70539 -11.53445 -11.28789 -11.12203 -10.98523 -10.84255 -10.79549 -10.69653 -10.31728 -10.09654 -9.92719 -9.68482 -9.47577 -9.27348 -8.54991 -8.48266 -8.37875 -6.74213 -5.92282 -3.37844 2.91973 3.28503 3.39121 3.39397 3.40438 3.66447 4.03669 4.39356 4.72839 4.87142 4.91955 5.00032 5.11572 5.21504 5.25838 5.36263 5.43778 5.47128 5.48970 5.58206 5.67581 5.82722 5.87223 5.98382 6.02444 6.14516 6.21576 6.33524 6.44459 6.50205 6.58266 6.63796 6.73481 6.79294 6.84746 6.86206 6.97433 7.03780 7.10835 7.44816 7.53639 7.73969 8.11667 8.37750 8.69821 9.11826 9.74177 10.30214 11.14378 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.005342 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.139391 B = 5240.279184 C = 6093.598312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.262 4.262 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.175 3.825 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.699 5.699 17 C 0.513 3.487 18 O -0.538 6.538 19 C 0.031 3.969 20 H 0.069 0.931 21 C 0.077 3.923 22 O -0.379 6.379 23 C 0.061 3.939 24 C 0.017 3.983 25 N -0.517 5.517 26 C 0.021 3.979 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.254 0.746 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.411 0.589 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 0.862 3.698 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.067 3.933 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.022 4.022 16 N -0.350 5.350 17 C 0.296 3.704 18 O -0.415 6.415 19 C -0.081 4.081 20 H 0.087 0.913 21 C -0.001 4.001 22 O -0.297 6.297 23 C -0.016 4.016 24 C -0.111 4.111 25 N -0.243 5.243 26 C -0.127 4.127 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.247 0.753 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.982 0.908 4.854 13.889 hybrid contribution 0.054 0.294 -1.871 1.895 sum -12.928 1.202 2.983 13.322 Atomic orbital electron populations 1.22440 1.00150 0.98931 1.01375 1.20744 0.91635 0.87468 0.98741 1.43915 1.75750 1.08286 1.02437 1.19120 1.10338 1.16494 0.93235 0.91776 1.25083 0.94497 1.01385 0.97978 1.70040 1.07961 1.34729 1.40440 0.86379 0.77675 0.81999 0.81640 1.20211 1.21442 1.21713 1.20529 0.88936 0.99722 0.84097 0.88031 1.22014 1.01021 0.97971 0.99305 1.22168 0.87984 0.96140 0.95913 1.46037 1.11157 1.58766 1.19086 1.20016 0.83532 0.80106 0.86714 1.90659 1.82871 1.49837 1.18127 1.22331 0.90327 0.97082 0.98362 0.91272 1.22557 0.89661 0.88706 0.99128 1.88016 1.13979 1.62315 1.65430 1.22705 0.86470 0.92533 0.99918 1.22854 0.94674 0.95733 0.97821 1.61986 1.00284 1.05391 1.56641 1.22480 1.03220 0.86947 1.00006 0.94877 0.93061 0.93578 0.94162 0.94455 0.93580 0.95151 0.90410 0.94769 0.92884 0.92876 0.75268 0.91467 0.87606 0.92066 0.88345 0.89323 0.93815 0.89923 0.91311 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.89 37.16 0.37 -2.61 16 2 C 0.14 2.77 5.66 -4.04 -0.02 2.75 16 3 N -0.58 -12.75 1.86 -165.65 -0.31 -13.06 16 4 C -0.26 -6.39 9.25 -15.06 -0.14 -6.53 16 5 H 0.06 1.59 7.90 -52.49 -0.41 1.17 16 6 C 0.01 0.27 4.81 -17.43 -0.08 0.18 16 7 N -0.89 -23.25 10.70 55.49 0.59 -22.65 16 8 Si 0.89 20.07 29.60 -169.99 -5.03 15.04 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.17 3.65 1.93 -67.93 -0.13 3.51 16 13 H 0.10 2.42 5.94 -51.93 -0.31 2.11 16 14 C -0.14 -2.88 9.06 37.16 0.34 -2.55 16 15 C 0.10 1.94 4.34 -4.04 -0.02 1.92 16 16 N -0.70 -12.32 4.01 -60.30 -0.24 -12.56 16 17 C 0.51 8.81 5.84 -10.99 -0.06 8.75 16 18 O -0.54 -10.77 15.41 5.55 0.09 -10.69 16 19 C 0.03 0.46 2.36 -68.76 -0.16 0.30 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 C 0.08 1.06 6.27 37.21 0.23 1.29 16 22 O -0.38 -5.10 10.83 -35.23 -0.38 -5.48 16 23 C 0.06 0.64 7.01 37.21 0.26 0.90 16 24 C 0.02 0.19 5.65 -3.71 -0.02 0.17 16 25 N -0.52 -7.14 4.53 -235.97 -1.07 -8.21 16 26 C 0.02 0.28 9.13 60.06 0.55 0.83 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.92 5.07 -51.93 -0.26 0.66 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.04 0.71 6.44 -51.93 -0.33 0.38 16 32 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.03 0.56 6.66 -51.93 -0.35 0.22 16 34 H 0.08 1.78 7.50 -51.93 -0.39 1.39 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.02 7.08 -51.93 -0.37 0.66 16 38 H 0.41 7.48 7.88 -40.82 -0.32 7.16 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.29 6.44 -51.93 -0.33 0.95 16 46 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 47 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -27.61 362.44 -7.91 -35.52 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.12 Total: 7.69 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 1.10 Total: 8.93 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -1.03 Total: -56.48 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.30 Total: -16.16 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.61 -7.91 -35.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152835006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.886 kcal (2) G-P(sol) polarization free energy of solvation -27.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds