Wall clock time and date at job start Tue Mar 31 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00149 * 2 1 4 4 C 1.46900 * 111.00237 * 123.95402 * 2 1 3 5 5 C 1.53008 * 109.47022 * 66.04600 * 4 2 1 6 6 O 1.42900 * 109.47028 * 64.99951 * 5 4 2 7 7 C 1.42900 * 113.99803 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46799 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00250 * 0.02562 * 8 7 6 10 10 N 1.34787 * 119.99793 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.62918 * 0.02562 * 10 8 7 12 12 C 1.53187 * 108.77227 * 233.33389 * 11 10 8 13 13 C 1.53038 * 109.31606 * 305.36475 * 12 11 10 14 14 C 1.53041 * 109.53768 * 61.36503 * 13 12 11 15 15 H 1.08994 * 109.49464 * 58.62048 * 14 13 12 16 16 N 1.46501 * 109.49881 * 178.68640 * 14 13 12 17 17 C 1.36934 * 120.00096 * 205.00197 * 16 14 13 18 18 H 1.08003 * 119.99879 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00097 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47200 * 60.00200 * 21 19 17 23 23 H 1.48501 * 109.47042 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47075 * 299.99792 * 21 19 17 25 25 C 1.46924 * 120.63033 * 179.72182 * 10 8 7 26 26 H 1.09003 * 109.47009 * 296.04353 * 1 2 3 27 27 H 1.09000 * 109.47164 * 56.04583 * 1 2 3 28 28 H 1.08996 * 109.47432 * 176.04328 * 1 2 3 29 29 H 1.09003 * 109.47360 * 183.95525 * 3 2 1 30 30 H 1.09004 * 109.47376 * 303.95715 * 3 2 1 31 31 H 1.08997 * 109.47236 * 63.95133 * 3 2 1 32 32 H 1.08995 * 109.47245 * 306.04642 * 4 2 1 33 33 H 1.09002 * 109.47219 * 186.04234 * 4 2 1 34 34 H 1.09002 * 109.46666 * 305.00514 * 5 4 2 35 35 H 1.08991 * 109.46875 * 185.00502 * 5 4 2 36 36 H 1.08997 * 109.46849 * 60.00305 * 7 6 5 37 37 H 1.08997 * 109.47159 * 300.00050 * 7 6 5 38 38 H 1.09002 * 109.58798 * 353.11768 * 11 10 8 39 39 H 1.08996 * 109.58371 * 113.54749 * 11 10 8 40 40 H 1.08999 * 109.50002 * 65.31872 * 12 11 10 41 41 H 1.09001 * 109.49774 * 185.38216 * 12 11 10 42 42 H 1.09003 * 109.46482 * 181.38835 * 13 12 11 43 43 H 1.09007 * 109.46056 * 301.36333 * 13 12 11 44 44 H 0.97001 * 119.99733 * 24.99856 * 16 14 13 45 45 H 0.96998 * 119.99798 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.58516 * 246.45674 * 25 10 8 47 47 H 1.09002 * 109.58479 * 6.87832 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2427 0.9703 6 8 2.2956 -2.7696 -0.1801 7 6 2.0213 -4.1499 -0.4281 8 6 2.7696 -4.5977 -1.6572 9 8 3.4692 -3.8123 -2.2610 10 7 2.6621 -5.8714 -2.0848 11 6 1.8189 -6.8345 -1.3637 12 6 2.6584 -8.0718 -1.0302 13 6 3.2825 -8.6213 -2.3150 14 6 4.2030 -7.5644 -2.9295 15 1 4.9783 -7.2958 -2.2121 16 7 4.8242 -8.1026 -4.1423 17 6 6.0213 -7.6011 -4.5787 18 1 6.5074 -6.8086 -4.0291 19 6 6.6102 -8.1114 -5.7275 20 7 6.0181 -9.0776 -6.3970 21 14 8.2429 -7.4268 -6.3233 22 1 9.2747 -7.6235 -5.2736 23 1 8.6546 -8.1355 -7.5617 24 1 8.0971 -5.9768 -6.6087 25 6 3.3806 -6.3213 -3.2848 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9164 -0.8524 31 1 1.7044 1.8723 0.9232 32 1 1.5612 -0.3873 2.0627 33 1 3.0798 -0.6611 1.1755 34 1 0.5532 -2.3389 0.8432 35 1 1.9438 -2.7963 1.8556 36 1 0.9511 -4.2853 -0.5844 37 1 2.3415 -4.7435 0.4281 38 1 1.4533 -6.3818 -0.4420 39 1 0.9756 -7.1233 -1.9910 40 1 3.4479 -7.7980 -0.3304 41 1 2.0213 -8.8332 -0.5801 42 1 3.8604 -9.5162 -2.0841 43 1 2.4932 -8.8716 -3.0239 44 1 4.3874 -8.8142 -4.6361 45 1 6.4294 -9.4339 -7.2000 46 1 2.6644 -6.5682 -4.0685 47 1 4.0455 -5.5298 -3.6308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210676418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:23 Heat of formation + Delta-G solvation = -55.280004 kcal Electronic energy + Delta-G solvation = -24846.883316 eV Core-core repulsion = 21258.543977 eV Total energy + Delta-G solvation = -3588.339339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.94469 -38.52034 -37.33536 -36.48655 -34.44851 -32.29085 -31.20551 -30.54479 -28.73968 -27.85800 -27.27633 -24.68154 -24.26085 -23.82564 -21.86963 -21.25871 -20.28781 -18.79516 -17.29299 -17.06242 -16.73952 -16.58683 -15.66362 -15.53219 -15.08747 -15.01174 -14.72089 -14.34706 -14.11391 -13.86652 -13.50452 -13.39151 -12.92843 -12.79052 -12.64861 -12.53941 -12.33138 -12.30921 -12.11136 -11.97551 -11.60524 -11.33760 -11.11675 -11.00513 -10.79972 -10.64830 -10.55088 -10.19963 -9.80658 -9.77328 -9.69074 -9.38489 -9.02496 -8.54870 -8.29193 -6.96800 -5.75445 -3.05117 2.86533 2.90514 3.49294 3.52759 3.55319 3.66268 3.83528 4.57797 4.61785 4.77862 4.79139 4.85716 4.92764 5.01040 5.04016 5.06984 5.10718 5.15561 5.19978 5.25422 5.31496 5.35381 5.51278 5.55358 5.57815 5.62116 5.65700 5.67185 5.80535 5.95013 6.05304 6.18426 6.23083 6.36936 6.52334 6.69391 6.75908 6.78105 6.86332 6.99672 7.10644 7.70558 7.75264 8.42481 8.49745 9.54658 10.08488 10.43822 11.46810 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.003020 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.530387 B = 9267.872470 C =10477.507245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.063 3.937 6 O -0.345 6.345 7 C 0.046 3.954 8 C 0.510 3.490 9 O -0.517 6.517 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.130 4.130 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.051 0.949 16 N -0.718 5.718 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.094 3.906 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.061 0.939 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 11.322 18.998 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.015 4.015 6 O -0.262 6.262 7 C -0.035 4.035 8 C 0.296 3.704 9 O -0.391 6.391 10 N -0.345 5.345 11 C -0.016 4.016 12 C -0.169 4.169 13 C -0.165 4.165 14 C 0.057 3.943 15 H 0.069 0.931 16 N -0.359 5.359 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.030 4.030 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.471 11.717 18.058 25.938 hybrid contribution 0.148 0.259 0.375 0.479 sum -14.324 11.976 18.432 26.236 Atomic orbital electron populations 1.22446 0.87608 1.02310 1.00257 1.61865 1.07647 1.13736 1.42925 1.22378 1.01183 0.88462 1.00171 1.22148 1.01658 0.91951 0.91351 1.22596 0.96387 0.94017 0.88455 1.88155 1.69757 1.22231 1.46080 1.22250 0.99322 0.84975 0.96906 1.20148 0.82469 0.82117 0.85669 1.90744 1.39078 1.52288 1.56993 1.48240 1.47928 1.08944 1.29340 1.21733 0.93377 0.90291 0.96222 1.21885 0.99613 0.96686 0.98707 1.21825 0.99339 0.99354 0.95937 1.20501 0.92916 0.90784 0.90082 0.93121 1.42368 1.23196 1.43361 1.26946 1.19239 0.96650 1.15115 1.06346 0.91069 1.24742 0.99122 0.98818 0.97995 1.69651 1.39840 1.29244 1.19407 0.86259 0.83634 0.78422 0.77877 1.21213 1.21701 1.21054 1.22785 0.95605 0.99782 0.84803 0.95958 0.91278 0.91283 0.91088 0.91281 0.95997 0.93361 0.89556 0.93195 0.92856 0.90894 0.90812 0.90678 0.91299 0.91572 0.91002 0.91394 0.92010 0.78081 0.93438 0.92076 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.33 60.06 0.56 0.74 16 2 N -0.54 -5.64 4.97 -251.26 -1.25 -6.89 16 3 C 0.03 0.23 9.57 60.06 0.57 0.80 16 4 C 0.06 0.52 5.34 -3.82 -0.02 0.50 16 5 C 0.06 0.58 5.99 37.16 0.22 0.81 16 6 O -0.34 -4.81 9.82 -55.14 -0.54 -5.35 16 7 C 0.05 0.55 4.77 36.00 0.17 0.72 16 8 C 0.51 8.64 7.78 -10.98 -0.09 8.55 16 9 O -0.52 -11.47 15.91 -14.36 -0.23 -11.70 16 10 N -0.61 -9.53 2.97 -172.75 -0.51 -10.05 16 11 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 12 C -0.13 -1.50 6.08 -26.62 -0.16 -1.66 16 13 C -0.13 -1.96 5.35 -26.69 -0.14 -2.11 16 14 C 0.17 3.38 2.92 -67.79 -0.20 3.18 16 15 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 16 N -0.72 -18.07 5.12 -53.29 -0.27 -18.34 16 17 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 16 18 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 21 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.09 1.84 6.02 -3.69 -0.02 1.82 16 26 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.07 0.56 6.37 -51.93 -0.33 0.23 16 29 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 30 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.05 0.34 8.12 -51.93 -0.42 -0.09 16 33 H 0.09 0.84 8.06 -51.93 -0.42 0.43 16 34 H 0.05 0.40 6.34 -51.93 -0.33 0.07 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 37 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 38 H 0.07 0.60 5.94 -51.93 -0.31 0.29 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 44 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.09 2.10 7.01 -51.93 -0.36 1.74 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -35.31 374.78 -9.16 -44.47 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.34 Total: 4.74 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 0.63 Total: 7.08 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -1.31 Total: -62.89 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.77 Total: -17.06 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.31 -9.16 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210676418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.807 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds