Wall clock time and date at job start Tue Mar 31 2020 03:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00149 * 2 1 4 4 C 1.46900 * 111.00237 * 123.95402 * 2 1 3 5 5 C 1.53008 * 109.47022 * 66.04600 * 4 2 1 6 6 O 1.42900 * 109.47028 * 64.99951 * 5 4 2 7 7 C 1.42900 * 113.99803 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46799 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00250 * 0.02562 * 8 7 6 10 10 N 1.34787 * 119.99793 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.62918 * 0.02562 * 10 8 7 12 12 C 1.53187 * 108.77227 * 233.33389 * 11 10 8 13 13 C 1.53038 * 109.31606 * 305.36475 * 12 11 10 14 14 C 1.53041 * 109.53768 * 61.36503 * 13 12 11 15 15 H 1.08994 * 109.49464 * 58.62048 * 14 13 12 16 16 N 1.46501 * 109.49881 * 178.68640 * 14 13 12 17 17 C 1.36934 * 120.00096 * 205.00197 * 16 14 13 18 18 H 1.08003 * 119.99879 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00097 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47200 * 60.00200 * 21 19 17 23 23 H 1.48501 * 109.47042 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47075 * 299.99792 * 21 19 17 25 25 C 1.46924 * 120.63033 * 179.72182 * 10 8 7 26 26 H 1.09003 * 109.47009 * 296.04353 * 1 2 3 27 27 H 1.09000 * 109.47164 * 56.04583 * 1 2 3 28 28 H 1.08996 * 109.47432 * 176.04328 * 1 2 3 29 29 H 1.09003 * 109.47360 * 183.95525 * 3 2 1 30 30 H 1.09004 * 109.47376 * 303.95715 * 3 2 1 31 31 H 1.08997 * 109.47236 * 63.95133 * 3 2 1 32 32 H 1.08995 * 109.47245 * 306.04642 * 4 2 1 33 33 H 1.09002 * 109.47219 * 186.04234 * 4 2 1 34 34 H 1.09002 * 109.46666 * 305.00514 * 5 4 2 35 35 H 1.08991 * 109.46875 * 185.00502 * 5 4 2 36 36 H 1.08997 * 109.46849 * 60.00305 * 7 6 5 37 37 H 1.08997 * 109.47159 * 300.00050 * 7 6 5 38 38 H 1.09002 * 109.58798 * 353.11768 * 11 10 8 39 39 H 1.08996 * 109.58371 * 113.54749 * 11 10 8 40 40 H 1.08999 * 109.50002 * 65.31872 * 12 11 10 41 41 H 1.09001 * 109.49774 * 185.38216 * 12 11 10 42 42 H 1.09003 * 109.46482 * 181.38835 * 13 12 11 43 43 H 1.09007 * 109.46056 * 301.36333 * 13 12 11 44 44 H 0.97001 * 119.99733 * 24.99856 * 16 14 13 45 45 H 0.96998 * 119.99798 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.58516 * 246.45674 * 25 10 8 47 47 H 1.09002 * 109.58479 * 6.87832 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2427 0.9703 6 8 2.2956 -2.7696 -0.1801 7 6 2.0213 -4.1499 -0.4281 8 6 2.7696 -4.5977 -1.6572 9 8 3.4692 -3.8123 -2.2610 10 7 2.6621 -5.8714 -2.0848 11 6 1.8189 -6.8345 -1.3637 12 6 2.6584 -8.0718 -1.0302 13 6 3.2825 -8.6213 -2.3150 14 6 4.2030 -7.5644 -2.9295 15 1 4.9783 -7.2958 -2.2121 16 7 4.8242 -8.1026 -4.1423 17 6 6.0213 -7.6011 -4.5787 18 1 6.5074 -6.8086 -4.0291 19 6 6.6102 -8.1114 -5.7275 20 7 6.0181 -9.0776 -6.3970 21 14 8.2429 -7.4268 -6.3233 22 1 9.2747 -7.6235 -5.2736 23 1 8.6546 -8.1355 -7.5617 24 1 8.0971 -5.9768 -6.6087 25 6 3.3806 -6.3213 -3.2848 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9164 -0.8524 31 1 1.7044 1.8723 0.9232 32 1 1.5612 -0.3873 2.0627 33 1 3.0798 -0.6611 1.1755 34 1 0.5532 -2.3389 0.8432 35 1 1.9438 -2.7963 1.8556 36 1 0.9511 -4.2853 -0.5844 37 1 2.3415 -4.7435 0.4281 38 1 1.4533 -6.3818 -0.4420 39 1 0.9756 -7.1233 -1.9910 40 1 3.4479 -7.7980 -0.3304 41 1 2.0213 -8.8332 -0.5801 42 1 3.8604 -9.5162 -2.0841 43 1 2.4932 -8.8716 -3.0239 44 1 4.3874 -8.8142 -4.6361 45 1 6.4294 -9.4339 -7.2000 46 1 2.6644 -6.5682 -4.0685 47 1 4.0455 -5.5298 -3.6308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210676418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:22 Heat of formation + Delta-G solvation = -81.867483 kcal Electronic energy + Delta-G solvation = -24848.036235 eV Core-core repulsion = 21258.543977 eV Total energy + Delta-G solvation = -3589.492259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21088 -39.38283 -38.57324 -37.43130 -36.21560 -33.94849 -32.72327 -31.41706 -30.24860 -28.52964 -28.42880 -25.91398 -25.79041 -24.92991 -23.23340 -21.94173 -21.75119 -20.07986 -19.12979 -18.36954 -17.65143 -17.49182 -16.91117 -16.57059 -16.43430 -15.85631 -15.79210 -15.62803 -15.43479 -15.38590 -14.96097 -14.82379 -14.07177 -13.96320 -13.70287 -13.53204 -13.33447 -13.18700 -13.10076 -13.05337 -12.88772 -12.62274 -12.48674 -12.29722 -12.26152 -12.01636 -11.87871 -11.80455 -11.65796 -11.33528 -11.10746 -10.70434 -10.56213 -9.73269 -9.19877 -9.01967 -7.99752 -5.28825 1.43012 1.46365 1.52451 1.61541 1.78118 2.52497 2.90741 3.07903 3.33170 3.59128 3.77480 4.01722 4.06437 4.09365 4.13739 4.19619 4.26974 4.30873 4.33147 4.36637 4.40064 4.47991 4.54145 4.54907 4.63523 4.66914 4.75120 4.78107 4.89542 4.91914 4.92779 5.00292 5.05622 5.06803 5.16872 5.39842 5.43075 5.48732 5.58023 6.05396 6.12590 6.23223 6.28524 6.52695 7.22657 7.29751 8.02318 8.27571 9.22693 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.003020 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.530387 B = 9267.872470 C =10477.507245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.571 5.571 3 C 0.027 3.973 4 C 0.054 3.946 5 C 0.059 3.941 6 O -0.388 6.388 7 C 0.055 3.945 8 C 0.498 3.502 9 O -0.586 6.586 10 N -0.605 5.605 11 C 0.100 3.900 12 C -0.121 4.121 13 C -0.119 4.119 14 C 0.167 3.833 15 H 0.030 0.970 16 N -0.730 5.730 17 C -0.247 4.247 18 H 0.063 0.937 19 C -0.067 4.067 20 N -0.963 5.963 21 Si 0.968 3.032 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.285 1.285 25 C 0.108 3.892 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.378 0.622 45 H 0.254 0.746 46 H 0.058 0.942 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.581 11.048 21.929 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.296 5.296 3 C -0.121 4.121 4 C -0.073 4.073 5 C -0.017 4.017 6 O -0.307 6.307 7 C -0.024 4.024 8 C 0.287 3.713 9 O -0.466 6.466 10 N -0.340 5.340 11 C -0.021 4.021 12 C -0.160 4.160 13 C -0.157 4.157 14 C 0.058 3.942 15 H 0.048 0.952 16 N -0.370 5.370 17 C -0.379 4.379 18 H 0.081 0.919 19 C -0.260 4.260 20 N -0.613 5.613 21 Si 0.796 3.204 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.211 1.211 25 C -0.018 4.018 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.210 0.790 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.772 11.432 21.063 29.251 hybrid contribution 0.799 0.380 -0.479 1.006 sum -15.973 11.812 20.584 28.607 Atomic orbital electron populations 1.22440 0.86455 1.02546 1.00964 1.61859 1.09005 1.14572 1.44190 1.22352 1.00509 0.88215 1.00998 1.22207 1.00859 0.92247 0.92033 1.22837 0.97110 0.93900 0.87849 1.88115 1.71100 1.23212 1.48234 1.22301 1.00252 0.84888 0.94945 1.21269 0.81748 0.81579 0.86670 1.90712 1.42215 1.54222 1.59404 1.48293 1.47627 1.09865 1.28168 1.22185 0.92758 0.89173 0.97978 1.21886 1.00120 0.97832 0.96137 1.21751 0.98445 0.97471 0.98065 1.20671 0.93207 0.92442 0.87914 0.95171 1.42509 1.22717 1.43338 1.28423 1.19473 0.97729 1.14452 1.06251 0.91905 1.25479 1.02483 0.99602 0.98439 1.69778 1.41228 1.30543 1.19779 0.85307 0.80095 0.77493 0.77472 1.20284 1.21367 1.21139 1.22189 0.95079 0.97733 0.86758 0.94343 0.91587 0.91105 0.92160 0.91284 0.94391 0.90855 0.91207 0.91433 0.90338 0.87256 0.87169 0.86058 0.89513 0.91675 0.86784 0.92059 0.91458 0.78971 0.93766 0.92404 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.33 127.69 1.19 1.54 16 2 N -0.57 -11.40 4.97 -948.85 -4.71 -16.11 16 3 C 0.03 0.46 9.57 127.69 1.22 1.68 16 4 C 0.05 0.89 5.34 86.31 0.46 1.35 16 5 C 0.06 0.92 5.99 71.98 0.43 1.35 16 6 O -0.39 -10.12 9.82 -129.94 -1.28 -11.40 16 7 C 0.06 1.14 4.77 71.24 0.34 1.48 16 8 C 0.50 16.55 7.78 87.65 0.68 17.24 16 9 O -0.59 -27.26 15.91 16.00 0.25 -27.00 16 10 N -0.60 -18.22 2.97 -818.84 -2.43 -20.65 16 11 C 0.10 1.76 6.34 86.36 0.55 2.30 16 12 C -0.12 -2.29 6.08 30.67 0.19 -2.11 16 13 C -0.12 -3.53 5.35 30.62 0.16 -3.36 16 14 C 0.17 6.87 2.92 45.08 0.13 7.01 16 15 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 16 N -0.73 -38.04 5.12 -322.52 -1.65 -39.69 16 17 C -0.25 -14.53 9.93 84.03 0.83 -13.70 16 18 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 20 N -0.96 -59.85 13.06 21.65 0.28 -59.56 16 21 Si 0.97 48.45 29.55 68.60 2.03 50.47 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 25 C 0.11 4.36 6.02 86.37 0.52 4.88 16 26 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 0.97 8.12 -2.39 -0.02 0.96 16 28 H 0.07 0.98 6.37 -2.39 -0.02 0.97 16 29 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 30 H 0.07 1.11 8.12 -2.38 -0.02 1.09 16 31 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 33 H 0.07 1.34 8.06 -2.39 -0.02 1.32 16 34 H 0.07 0.80 6.34 -2.39 -0.02 0.78 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 1.47 7.95 -2.39 -0.02 1.45 16 37 H 0.11 1.47 7.69 -2.39 -0.02 1.45 16 38 H 0.12 1.11 5.94 -2.39 -0.01 1.09 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.38 20.53 7.80 -92.71 -0.72 19.81 16 45 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.04 2.09 7.01 -2.39 -0.02 2.08 16 Total: -1.00 -83.25 374.78 -0.12 -83.37 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.21 Total: 24.45 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 7.18 Total: 16.13 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -8.52 Total: -136.02 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.02 Total: -38.40 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.47 kcal Total: -83.25 -0.12 -83.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210676418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.499 kcal (2) G-P(sol) polarization free energy of solvation -83.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds