Wall clock time and date at job start Tue Mar 31 2020 03:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.46952 * 2 1 4 4 C 1.46900 * 111.00265 * 160.28891 * 3 2 1 5 5 C 1.52995 * 109.47272 * 287.71634 * 4 3 2 6 6 C 1.46904 * 111.00274 * 284.24686 * 3 2 1 7 7 C 1.50698 * 109.47504 * 169.99954 * 6 3 2 8 8 O 1.21285 * 119.99628 * 0.02562 * 7 6 3 9 9 N 1.34769 * 120.00056 * 179.97438 * 7 6 3 10 10 C 1.46501 * 119.99838 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.78418 * 31.76266 * 10 9 7 12 12 C 1.54328 * 110.72288 * 268.52223 * 10 9 7 13 13 N 1.47018 * 107.27054 * 219.44678 * 12 10 9 14 14 C 1.36941 * 125.64750 * 178.97633 * 13 12 10 15 15 H 1.08008 * 119.99568 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00246 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99804 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99982 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47302 * 59.99960 * 18 16 14 20 20 H 1.48500 * 109.47374 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47371 * 299.99803 * 18 16 14 22 22 C 1.47419 * 108.70835 * 358.94156 * 13 12 10 23 23 C 1.54916 * 104.83255 * 24.12578 * 22 13 12 24 24 H 1.08998 * 110.99937 * 81.06672 * 23 22 13 25 25 O 1.42898 * 111.00653 * 204.88110 * 23 22 13 26 26 C 1.42902 * 114.00056 * 268.54866 * 25 23 22 27 27 H 1.08999 * 109.47205 * 305.48418 * 1 2 3 28 28 H 1.09000 * 109.47112 * 65.48491 * 1 2 3 29 29 H 1.09004 * 109.46755 * 185.48809 * 1 2 3 30 30 H 1.08993 * 109.47274 * 239.99952 * 2 1 3 31 31 H 1.09003 * 109.47050 * 119.99747 * 2 1 3 32 32 H 1.09003 * 109.46620 * 47.71447 * 4 3 2 33 33 H 1.08997 * 109.47171 * 167.71197 * 4 3 2 34 34 H 1.09003 * 109.47373 * 178.94726 * 5 4 3 35 35 H 1.09008 * 109.46787 * 298.94413 * 5 4 3 36 36 H 1.08997 * 109.47447 * 58.94121 * 5 4 3 37 37 H 1.08996 * 109.47046 * 49.99448 * 6 3 2 38 38 H 1.09002 * 109.46699 * 289.99713 * 6 3 2 39 39 H 0.97003 * 120.00117 * 359.97438 * 9 7 6 40 40 H 1.09005 * 109.87364 * 338.86112 * 12 10 9 41 41 H 1.08996 * 109.88022 * 100.02762 * 12 10 9 42 42 H 0.97004 * 119.99960 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.36613 * 265.28973 * 22 13 12 44 44 H 1.08996 * 110.37031 * 142.97079 * 22 13 12 45 45 H 1.09000 * 109.46939 * 300.00187 * 26 25 23 46 46 H 1.08999 * 109.46718 * 60.00041 * 26 25 23 47 47 H 1.08997 * 109.47071 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4124 1.4511 0.4625 5 6 3.4620 1.1928 1.9697 6 6 1.8769 1.9939 -1.3293 7 6 2.1544 3.4723 -1.2371 8 8 2.4431 3.9696 -0.1693 9 7 2.0827 4.2415 -2.3414 10 6 2.3519 5.6787 -2.2516 11 1 3.0877 5.8867 -1.4748 12 6 1.0483 6.4633 -1.9930 13 7 1.1120 7.6926 -2.7970 14 6 0.1387 8.6536 -2.8642 15 1 -0.7719 8.5406 -2.2944 16 6 0.3224 9.7728 -3.6644 17 7 1.4323 9.9106 -4.3583 18 14 -1.0055 11.0832 -3.7566 19 1 -1.2412 11.6453 -2.4024 20 1 -0.5692 12.1667 -4.6736 21 1 -2.2623 10.4794 -4.2675 22 6 2.3974 7.7198 -3.5182 23 6 2.8265 6.2348 -3.6202 24 1 2.3148 5.7360 -4.4433 25 8 4.2442 6.1194 -3.7570 26 6 4.6972 6.0939 -5.1121 27 1 -0.3633 0.5965 0.8368 28 1 -0.3633 0.4264 -0.9350 29 1 -0.3633 -1.0230 0.0983 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0033 0.6956 -0.0552 33 1 3.8194 2.4395 0.2497 34 1 4.4972 1.2233 2.3097 35 1 2.8864 1.9592 2.4888 36 1 3.0378 0.2120 2.1845 37 1 0.8618 1.8367 -1.6938 38 1 2.5856 1.5335 -2.0177 39 1 1.8529 3.8435 -3.1956 40 1 0.1893 5.8653 -2.2974 41 1 0.9712 6.7156 -0.9355 42 1 1.5609 10.6929 -4.9173 43 1 3.1362 8.2903 -2.9553 44 1 2.2655 8.1458 -4.5128 45 1 4.2540 5.2417 -5.6273 46 1 4.3998 7.0156 -5.6120 47 1 5.7834 6.0052 -5.1305 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213594702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:53 Heat of formation + Delta-G solvation = -40.050166 kcal Electronic energy + Delta-G solvation = -25493.882135 eV Core-core repulsion = 21906.203212 eV Total energy + Delta-G solvation = -3587.678924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -39.91884 -38.42729 -37.22304 -35.85692 -33.99072 -31.98356 -31.79132 -30.46877 -28.79207 -27.38339 -26.14794 -25.96961 -24.08087 -23.06897 -21.31572 -20.65539 -20.23559 -19.77699 -17.49284 -16.85511 -16.46177 -15.85478 -15.64875 -15.36447 -14.84036 -14.66226 -14.53852 -14.29466 -14.15490 -13.87660 -13.38043 -13.18171 -12.99767 -12.57805 -12.38564 -12.22006 -12.10270 -11.82307 -11.69551 -11.60914 -11.46951 -11.28572 -11.02732 -10.99438 -10.82599 -10.80089 -10.75182 -10.21829 -9.89007 -9.79243 -9.55614 -9.05119 -8.70084 -8.64815 -8.41182 -6.89816 -5.69501 -3.12462 2.86362 3.17477 3.39728 3.43887 3.45237 3.87049 4.12721 4.49269 4.74547 4.80634 5.01899 5.03592 5.09931 5.21525 5.27566 5.30246 5.41467 5.43168 5.51434 5.52404 5.57021 5.62344 5.69466 5.69781 5.70269 5.83478 5.85881 5.96233 6.02457 6.08586 6.09227 6.22582 6.23737 6.51525 6.70198 6.83380 6.94472 6.97399 7.25717 7.55445 7.71485 7.74701 7.80902 8.26814 8.49590 9.16127 9.76592 10.39231 11.34259 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.003492 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.533178 B = 8015.285365 C = 8880.260933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 N -0.521 5.521 4 C 0.047 3.953 5 C -0.141 4.141 6 C 0.035 3.965 7 C 0.512 3.488 8 O -0.520 6.520 9 N -0.718 5.718 10 C 0.139 3.861 11 H 0.102 0.898 12 C 0.131 3.869 13 N -0.601 5.601 14 C -0.223 4.223 15 H 0.080 0.920 16 C -0.010 4.010 17 N -0.924 5.924 18 Si 0.918 3.082 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.140 3.860 23 C 0.054 3.946 24 H 0.065 0.935 25 O -0.382 6.382 26 C 0.035 3.965 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.025 0.975 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.396 0.604 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.112 0.888 45 H 0.033 0.967 46 H 0.047 0.953 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 -19.764 1.991 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.246 5.246 4 C -0.080 4.080 5 C -0.199 4.199 6 C -0.096 4.096 7 C 0.297 3.703 8 O -0.395 6.395 9 N -0.370 5.370 10 C 0.034 3.966 11 H 0.120 0.880 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.351 4.351 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.572 5.572 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.014 3.986 23 C -0.005 4.005 24 H 0.083 0.917 25 O -0.300 6.300 26 C -0.062 4.062 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.229 0.771 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.129 0.871 45 H 0.051 0.949 46 H 0.066 0.934 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.492 -18.942 3.173 19.520 hybrid contribution -0.440 0.042 -1.366 1.436 sum 3.052 -18.900 1.807 19.230 Atomic orbital electron populations 1.21793 0.94799 1.01391 1.02648 1.22158 0.96342 0.88504 1.00916 1.61702 1.21762 1.17438 1.23686 1.22211 0.87469 1.02156 0.96202 1.21714 1.01244 1.01544 0.95404 1.21995 1.03243 0.92696 0.91660 1.20418 0.77230 0.88434 0.84173 1.90693 1.46418 1.74635 1.27804 1.45992 1.71439 1.08885 1.10683 1.22083 0.97921 0.78259 0.98294 0.87965 1.21609 0.93821 0.88526 0.95674 1.44298 1.17403 1.20189 1.50952 1.19062 0.95914 0.97568 1.22561 0.90242 1.24799 0.97725 0.98406 0.99629 1.69745 1.25126 1.29459 1.32902 0.86105 0.80607 0.81016 0.77493 1.21088 1.21549 1.21125 1.22321 0.86513 0.88581 1.01169 1.24033 0.80554 1.00473 0.95480 0.91680 1.87841 1.22029 1.94591 1.25529 1.22689 0.99529 1.00101 0.83845 0.91539 0.92859 0.92439 0.94841 0.90413 0.95645 0.89110 0.92606 0.91509 0.93285 0.87875 0.92220 0.77074 0.95244 0.94868 0.93573 0.95620 0.87068 0.94861 0.93410 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.94 37.16 0.37 -0.86 16 2 C 0.05 0.43 5.55 -3.82 -0.02 0.41 16 3 N -0.52 -6.07 4.13 -236.07 -0.97 -7.05 16 4 C 0.05 0.55 5.23 -3.83 -0.02 0.53 16 5 C -0.14 -1.49 10.00 37.16 0.37 -1.12 16 6 C 0.04 0.39 5.28 -4.97 -0.03 0.37 16 7 C 0.51 7.73 7.39 -10.99 -0.08 7.65 16 8 O -0.52 -9.92 14.13 5.55 0.08 -9.84 16 9 N -0.72 -10.65 5.10 -52.03 -0.27 -10.92 16 10 C 0.14 2.63 3.05 -66.09 -0.20 2.43 16 11 H 0.10 2.15 7.55 -51.93 -0.39 1.76 16 12 C 0.13 2.86 6.99 -3.06 -0.02 2.84 16 13 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 14 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 15 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -26.57 10.09 55.49 0.56 -26.01 16 18 Si 0.92 21.95 29.55 -169.99 -5.02 16.92 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.14 3.41 5.62 -2.53 -0.01 3.39 16 23 C 0.05 1.04 3.12 -24.58 -0.08 0.96 16 24 H 0.07 1.15 7.77 -51.93 -0.40 0.75 16 25 O -0.38 -6.99 10.52 -35.23 -0.37 -7.36 16 26 C 0.04 0.50 10.89 101.05 1.10 1.60 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.43 6.97 -51.93 -0.36 0.07 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.27 8.00 -51.93 -0.42 -0.15 16 31 H 0.08 0.65 6.25 -51.93 -0.32 0.32 16 32 H 0.03 0.26 8.05 -51.93 -0.42 -0.16 16 33 H 0.09 1.31 5.81 -51.93 -0.30 1.00 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.05 0.44 6.53 -51.93 -0.34 0.11 16 37 H 0.10 0.98 6.72 -51.93 -0.35 0.63 16 38 H 0.06 0.56 8.12 -51.93 -0.42 0.13 16 39 H 0.40 4.69 8.56 -40.82 -0.35 4.34 16 40 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.11 2.97 5.88 -51.93 -0.31 2.67 16 45 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -32.22 370.66 -8.01 -40.23 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.15 Total: 3.05 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 1.13 Total: 11.46 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -1.26 Total: -60.05 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.29 Total: -17.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.22 -8.01 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213594702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.176 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds