Wall clock time and date at job start Tue Mar 31 2020 03:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99899 * 2 1 4 4 C 1.50693 * 109.47259 * 66.04352 * 3 2 1 5 5 H 1.08002 * 120.00353 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00159 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99629 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00129 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47339 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46964 * 120.00438 * 8 6 4 11 11 H 1.48496 * 109.47538 * 240.00472 * 8 6 4 12 12 C 1.46897 * 110.99676 * 236.04351 * 2 1 3 13 13 C 1.53006 * 109.47055 * 199.72048 * 12 2 1 14 14 H 1.08999 * 109.47063 * 304.63041 * 13 12 2 15 15 O 1.42897 * 109.46863 * 64.62881 * 13 12 2 16 16 C 1.52995 * 109.47304 * 184.62896 * 13 12 2 17 17 N 1.46896 * 109.47244 * 179.97438 * 16 13 12 18 18 C 1.46902 * 111.00376 * 179.97438 * 17 16 13 19 19 C 1.52991 * 109.47452 * 179.27121 * 18 17 16 20 20 C 1.53005 * 115.55303 * 294.30489 * 19 18 17 21 21 C 1.50700 * 109.46856 * 278.42946 * 20 19 18 22 22 N 1.34779 * 119.99582 * 176.77841 * 21 20 19 23 23 O 1.21278 * 120.00244 * 356.50139 * 21 20 19 24 24 C 1.53005 * 117.51975 * 80.00285 * 19 18 17 25 25 C 1.52999 * 117.49934 * 148.63228 * 19 18 17 26 26 H 1.09005 * 109.47251 * 187.81784 * 1 2 3 27 27 H 1.09005 * 109.47193 * 307.81263 * 1 2 3 28 28 H 1.09003 * 109.47387 * 67.81627 * 1 2 3 29 29 H 1.08995 * 109.46968 * 186.04885 * 3 2 1 30 30 H 1.09007 * 109.46906 * 306.04752 * 3 2 1 31 31 H 0.97000 * 119.99993 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46885 * 79.72621 * 12 2 1 33 33 H 1.08996 * 109.47804 * 319.72073 * 12 2 1 34 34 H 0.96708 * 113.99654 * 60.00083 * 15 13 12 35 35 H 1.09007 * 109.46774 * 60.00212 * 16 13 12 36 36 H 1.08996 * 109.47204 * 300.00599 * 16 13 12 37 37 H 1.00899 * 111.00704 * 303.95805 * 17 16 13 38 38 H 1.09008 * 109.46787 * 59.27243 * 18 17 16 39 39 H 1.08998 * 109.47016 * 299.27391 * 18 17 16 40 40 H 1.08997 * 109.47162 * 158.42645 * 20 19 18 41 41 H 1.09004 * 109.46945 * 38.42477 * 20 19 18 42 42 H 0.97003 * 120.00010 * 179.72360 * 22 21 20 43 43 H 0.96999 * 120.00232 * 359.72064 * 22 21 20 44 44 H 1.08997 * 117.50301 * 214.97071 * 24 19 18 45 45 H 1.09005 * 117.49355 * 359.97438 * 24 19 18 46 46 H 1.09000 * 117.49705 * 359.97438 * 25 19 18 47 47 H 1.09005 * 117.49735 * 144.99846 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2983 5 1 1.0745 1.5113 2.0488 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0015 0.6153 8 14 1.5825 4.1870 3.1379 9 1 0.8144 3.2448 3.9907 10 1 2.8240 4.5936 3.8442 11 1 0.7559 5.3886 2.8584 12 6 1.9954 -0.7660 -1.1375 13 6 3.4459 -1.1640 -0.8570 14 1 4.0305 -0.2718 -0.6327 15 8 3.4880 -2.0543 0.2599 16 6 4.0306 -1.8609 -2.0871 17 7 5.4234 -2.2423 -1.8180 18 6 6.0186 -2.9163 -2.9797 19 6 7.4714 -3.2813 -2.6685 20 6 8.4210 -2.0982 -2.4693 21 6 8.8686 -1.5817 -3.8123 22 7 9.6625 -0.4950 -3.8859 23 8 8.5187 -2.1468 -4.8267 24 6 7.7210 -4.5363 -1.8297 25 6 8.0399 -4.5403 -3.3262 26 1 -0.3634 -1.0182 0.1398 27 1 -0.3634 0.6301 0.8119 28 1 -0.3634 0.3880 -0.9516 29 1 3.0796 1.3444 -0.1083 30 1 1.5610 1.9273 -0.8310 31 1 2.9873 4.9177 0.7772 32 1 1.9544 -0.1534 -2.0382 33 1 1.3937 -1.6635 -1.2809 34 1 2.9878 -2.8718 0.1303 35 1 3.9985 -1.1816 -2.9391 36 1 3.4460 -2.7530 -2.3115 37 1 5.9716 -1.4406 -1.5446 38 1 5.9881 -2.2496 -3.8415 39 1 5.4557 -3.8229 -3.2015 40 1 9.2899 -2.4222 -1.8965 41 1 7.9046 -1.3049 -1.9286 42 1 9.9539 -0.1648 -4.7502 43 1 9.9423 -0.0429 -3.0746 44 1 8.5615 -4.5192 -1.1360 45 1 6.8499 -5.1020 -1.4991 46 1 7.3787 -5.1089 -3.9801 47 1 9.0904 -4.5258 -3.6169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261437843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:34 Heat of formation + Delta-G solvation = -63.203562 kcal Electronic energy + Delta-G solvation = -24655.560977 eV Core-core repulsion = 21066.878047 eV Total energy + Delta-G solvation = -3588.682930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.10497 -38.27551 -37.59106 -35.65921 -34.30796 -33.88320 -32.47165 -30.03305 -29.41851 -27.36198 -26.65181 -24.43757 -23.09353 -22.47134 -21.59299 -21.31260 -20.03293 -19.15188 -17.37820 -16.85767 -16.55957 -16.48951 -15.71851 -15.54232 -15.16915 -14.88247 -14.64589 -14.47396 -14.15885 -13.89354 -13.80745 -13.36273 -13.15941 -12.81113 -12.38004 -12.28670 -11.96876 -11.78163 -11.55392 -11.38566 -11.22959 -11.10292 -10.88477 -10.66001 -10.62326 -10.51112 -10.33434 -10.20689 -9.91767 -9.82901 -9.75039 -9.44553 -9.08675 -8.42244 -8.30975 -7.17429 -6.01660 -4.01719 2.43895 3.18421 3.32252 3.39510 3.45317 3.72886 4.16632 4.42350 4.45196 4.59525 4.73118 4.80015 4.85950 4.98112 5.06725 5.28447 5.33200 5.34053 5.42984 5.50022 5.57229 5.62222 5.67949 5.76688 5.78669 5.81072 5.86949 6.02500 6.07236 6.08392 6.16667 6.34707 6.51482 6.53804 6.74778 7.01262 7.07196 7.28830 7.33002 7.38922 7.82522 8.04322 8.10148 8.19991 8.29850 8.57825 9.06182 9.62188 11.09534 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.002990 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.782862 B = 9362.043832 C =10353.166420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.026 3.974 13 C 0.120 3.880 14 H 0.099 0.901 15 O -0.532 6.532 16 C 0.027 3.973 17 N -0.674 5.674 18 C 0.098 3.902 19 C -0.107 4.107 20 C -0.109 4.109 21 C 0.515 3.485 22 N -0.861 5.861 23 O -0.535 6.535 24 C -0.159 4.159 25 C -0.153 4.153 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.007 0.993 29 H 0.030 0.970 30 H -0.012 1.012 31 H 0.260 0.740 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.360 0.640 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.339 0.661 38 H 0.034 0.966 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.399 0.601 43 H 0.402 0.598 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.808 -13.708 -8.368 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.104 4.104 13 C 0.060 3.940 14 H 0.117 0.883 15 O -0.334 6.334 16 C -0.103 4.103 17 N -0.305 5.305 18 C -0.031 4.031 19 C -0.108 4.108 20 C -0.149 4.149 21 C 0.300 3.700 22 N -0.425 5.425 23 O -0.411 6.411 24 C -0.196 4.196 25 C -0.191 4.191 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.205 0.795 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.158 0.842 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.230 0.770 43 H 0.230 0.770 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.904 -14.364 -7.944 20.276 hybrid contribution -0.366 1.898 -0.896 2.130 sum 11.538 -12.466 -8.841 19.149 Atomic orbital electron populations 1.22223 0.88887 0.99875 1.00080 1.62021 1.06529 1.17657 1.39294 1.19768 0.95382 0.81628 0.96529 1.21208 1.34429 0.96776 1.01671 0.91773 1.24989 0.95358 0.97380 0.96995 1.69967 1.38710 1.11365 1.34066 0.86442 0.78162 0.79236 0.83601 1.19615 1.21004 1.21210 1.22684 0.96137 0.98109 0.93453 1.21846 0.94819 0.92564 0.84821 0.88284 1.86672 1.75054 1.32118 1.39553 1.22716 0.90164 0.99524 0.97908 1.60360 1.02317 1.32278 1.35548 1.21403 0.91393 0.98954 0.91368 1.20912 0.94670 0.88929 1.06265 1.21235 1.00196 0.98813 0.94645 1.20761 0.77505 0.79816 0.91950 1.43954 1.53903 1.31982 1.12618 1.90744 1.55503 1.57508 1.37323 1.23045 1.03186 0.99739 0.93604 1.22860 1.01433 0.99531 0.95279 0.93719 0.90498 0.97455 0.95235 0.99458 0.93078 0.95212 0.92132 0.79466 0.94785 0.91035 0.84215 0.94803 0.90971 0.88434 0.88281 0.77015 0.77000 0.89035 0.88264 0.88922 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.35 60.06 0.56 1.31 16 2 N -0.53 -11.59 4.63 -244.37 -1.13 -12.73 16 3 C 0.19 5.04 4.55 -4.98 -0.02 5.01 16 4 C -0.50 -14.29 8.40 -34.44 -0.29 -14.58 16 5 H 0.06 1.83 7.16 -52.49 -0.38 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.03 0.46 4.64 -3.82 -0.02 0.44 16 13 C 0.12 1.96 3.26 -26.73 -0.09 1.88 16 14 H 0.10 1.91 6.67 -51.93 -0.35 1.57 16 15 O -0.53 -9.09 13.15 -35.23 -0.46 -9.55 16 16 C 0.03 0.35 5.35 -3.83 -0.02 0.33 16 17 N -0.67 -8.34 6.37 -113.79 -0.73 -9.07 16 18 C 0.10 1.12 5.56 -3.83 -0.02 1.10 16 19 C -0.11 -1.07 1.27 -154.51 -0.20 -1.27 16 20 C -0.11 -0.93 5.62 -27.88 -0.16 -1.08 16 21 C 0.51 5.12 8.01 -10.98 -0.09 5.03 16 22 N -0.86 -5.64 8.87 31.22 0.28 -5.36 16 23 O -0.53 -7.41 16.07 5.56 0.09 -7.32 16 24 C -0.16 -1.45 9.90 -26.73 -0.26 -1.71 16 25 C -0.15 -1.49 8.84 -26.73 -0.24 -1.72 16 26 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.08 1.64 6.68 -51.93 -0.35 1.29 16 28 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.03 0.82 6.57 -51.93 -0.34 0.48 16 30 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 33 H 0.06 0.92 7.93 -51.93 -0.41 0.50 16 34 H 0.36 4.83 9.05 45.56 0.41 5.25 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.34 4.24 7.26 -39.29 -0.29 3.95 16 38 H 0.03 0.44 8.13 -51.92 -0.42 0.01 16 39 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.10 0.64 7.93 -51.93 -0.41 0.23 16 41 H 0.10 0.80 6.69 -51.93 -0.35 0.45 16 42 H 0.40 2.36 8.93 -40.82 -0.36 1.99 16 43 H 0.40 1.56 8.83 -40.82 -0.36 1.20 16 44 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -34.22 382.85 -8.78 -42.99 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.37 Total: 8.35 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.94 Total: -3.83 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.84 Total: -53.20 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.37 Total: -16.87 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.22 -8.78 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261437843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.209 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds