Wall clock time and date at job start Tue Mar 31 2020 03:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99899 * 2 1 4 4 C 1.50693 * 109.47259 * 66.04352 * 3 2 1 5 5 H 1.08002 * 120.00353 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00159 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99629 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00129 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47339 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46964 * 120.00438 * 8 6 4 11 11 H 1.48496 * 109.47538 * 240.00472 * 8 6 4 12 12 C 1.46897 * 110.99676 * 236.04351 * 2 1 3 13 13 C 1.53006 * 109.47055 * 199.72048 * 12 2 1 14 14 H 1.08999 * 109.47063 * 304.63041 * 13 12 2 15 15 O 1.42897 * 109.46863 * 64.62881 * 13 12 2 16 16 C 1.52995 * 109.47304 * 184.62896 * 13 12 2 17 17 N 1.46896 * 109.47244 * 179.97438 * 16 13 12 18 18 C 1.46902 * 111.00376 * 179.97438 * 17 16 13 19 19 C 1.52991 * 109.47452 * 179.27121 * 18 17 16 20 20 C 1.53005 * 115.55303 * 294.30489 * 19 18 17 21 21 C 1.50700 * 109.46856 * 278.42946 * 20 19 18 22 22 N 1.34779 * 119.99582 * 176.77841 * 21 20 19 23 23 O 1.21278 * 120.00244 * 356.50139 * 21 20 19 24 24 C 1.53005 * 117.51975 * 80.00285 * 19 18 17 25 25 C 1.52999 * 117.49934 * 148.63228 * 19 18 17 26 26 H 1.09005 * 109.47251 * 187.81784 * 1 2 3 27 27 H 1.09005 * 109.47193 * 307.81263 * 1 2 3 28 28 H 1.09003 * 109.47387 * 67.81627 * 1 2 3 29 29 H 1.08995 * 109.46968 * 186.04885 * 3 2 1 30 30 H 1.09007 * 109.46906 * 306.04752 * 3 2 1 31 31 H 0.97000 * 119.99993 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46885 * 79.72621 * 12 2 1 33 33 H 1.08996 * 109.47804 * 319.72073 * 12 2 1 34 34 H 0.96708 * 113.99654 * 60.00083 * 15 13 12 35 35 H 1.09007 * 109.46774 * 60.00212 * 16 13 12 36 36 H 1.08996 * 109.47204 * 300.00599 * 16 13 12 37 37 H 1.00899 * 111.00704 * 303.95805 * 17 16 13 38 38 H 1.09008 * 109.46787 * 59.27243 * 18 17 16 39 39 H 1.08998 * 109.47016 * 299.27391 * 18 17 16 40 40 H 1.08997 * 109.47162 * 158.42645 * 20 19 18 41 41 H 1.09004 * 109.46945 * 38.42477 * 20 19 18 42 42 H 0.97003 * 120.00010 * 179.72360 * 22 21 20 43 43 H 0.96999 * 120.00232 * 359.72064 * 22 21 20 44 44 H 1.08997 * 117.50301 * 214.97071 * 24 19 18 45 45 H 1.09005 * 117.49355 * 359.97438 * 24 19 18 46 46 H 1.09000 * 117.49705 * 359.97438 * 25 19 18 47 47 H 1.09005 * 117.49735 * 144.99846 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2983 5 1 1.0745 1.5113 2.0488 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0015 0.6153 8 14 1.5825 4.1870 3.1379 9 1 0.8144 3.2448 3.9907 10 1 2.8240 4.5936 3.8442 11 1 0.7559 5.3886 2.8584 12 6 1.9954 -0.7660 -1.1375 13 6 3.4459 -1.1640 -0.8570 14 1 4.0305 -0.2718 -0.6327 15 8 3.4880 -2.0543 0.2599 16 6 4.0306 -1.8609 -2.0871 17 7 5.4234 -2.2423 -1.8180 18 6 6.0186 -2.9163 -2.9797 19 6 7.4714 -3.2813 -2.6685 20 6 8.4210 -2.0982 -2.4693 21 6 8.8686 -1.5817 -3.8123 22 7 9.6625 -0.4950 -3.8859 23 8 8.5187 -2.1468 -4.8267 24 6 7.7210 -4.5363 -1.8297 25 6 8.0399 -4.5403 -3.3262 26 1 -0.3634 -1.0182 0.1398 27 1 -0.3634 0.6301 0.8119 28 1 -0.3634 0.3880 -0.9516 29 1 3.0796 1.3444 -0.1083 30 1 1.5610 1.9273 -0.8310 31 1 2.9873 4.9177 0.7772 32 1 1.9544 -0.1534 -2.0382 33 1 1.3937 -1.6635 -1.2809 34 1 2.9878 -2.8718 0.1303 35 1 3.9985 -1.1816 -2.9391 36 1 3.4460 -2.7530 -2.3115 37 1 5.9716 -1.4406 -1.5446 38 1 5.9881 -2.2496 -3.8415 39 1 5.4557 -3.8229 -3.2015 40 1 9.2899 -2.4222 -1.8965 41 1 7.9046 -1.3049 -1.9286 42 1 9.9539 -0.1648 -4.7502 43 1 9.9423 -0.0429 -3.0746 44 1 8.5615 -4.5192 -1.1360 45 1 6.8499 -5.1020 -1.4991 46 1 7.3787 -5.1089 -3.9801 47 1 9.0904 -4.5258 -3.6169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261437843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:32 Heat of formation + Delta-G solvation = -93.478242 kcal Electronic energy + Delta-G solvation = -24656.873786 eV Core-core repulsion = 21066.878047 eV Total energy + Delta-G solvation = -3589.995739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.88718 -39.53024 -38.58932 -37.18751 -35.41449 -34.60434 -34.59380 -31.26576 -30.23372 -29.34628 -27.89336 -25.98182 -24.61372 -23.28517 -22.75977 -22.18353 -21.69769 -19.93534 -18.59750 -18.05799 -17.69236 -17.56218 -16.88001 -16.84816 -16.51175 -16.09881 -16.05275 -15.67759 -15.43833 -15.10238 -14.94819 -14.56264 -14.52563 -14.09632 -13.92513 -13.46189 -13.17231 -13.06352 -12.95899 -12.78267 -12.55642 -12.53309 -12.28624 -12.27911 -12.13362 -12.00814 -11.52599 -11.33654 -11.28770 -11.01504 -10.65428 -10.60677 -10.60155 -10.55099 -9.33150 -8.94022 -8.20106 -6.29116 1.40879 1.41951 1.55648 1.68703 2.41181 2.50593 2.87275 3.12340 3.20473 3.50203 3.65967 3.75988 3.85995 3.97891 4.01819 4.08391 4.20883 4.32232 4.37196 4.47928 4.55948 4.57797 4.62485 4.66466 4.74453 4.78271 4.79998 4.89435 4.93768 5.08636 5.12912 5.14587 5.23774 5.25217 5.30172 5.35952 5.66060 5.91946 6.00585 6.08002 6.33971 6.37490 6.48962 6.65671 6.86879 7.15452 7.38463 7.40225 8.91297 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.002990 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.782862 B = 9362.043832 C =10353.166420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.026 3.974 13 C 0.131 3.869 14 H 0.062 0.938 15 O -0.549 6.549 16 C 0.039 3.961 17 N -0.673 5.673 18 C 0.104 3.896 19 C -0.119 4.119 20 C -0.106 4.106 21 C 0.510 3.490 22 N -0.845 5.845 23 O -0.580 6.580 24 C -0.147 4.147 25 C -0.155 4.155 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.011 0.989 29 H 0.005 0.995 30 H -0.043 1.043 31 H 0.264 0.736 32 H 0.024 0.976 33 H 0.095 0.905 34 H 0.378 0.622 35 H 0.030 0.970 36 H 0.091 0.909 37 H 0.337 0.663 38 H 0.016 0.984 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.404 0.596 43 H 0.416 0.584 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 -14.675 -7.332 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.103 4.103 13 C 0.070 3.930 14 H 0.080 0.920 15 O -0.354 6.354 16 C -0.091 4.091 17 N -0.304 5.304 18 C -0.025 4.025 19 C -0.120 4.120 20 C -0.146 4.146 21 C 0.296 3.704 22 N -0.409 5.409 23 O -0.460 6.460 24 C -0.184 4.184 25 C -0.192 4.192 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.023 0.977 30 H -0.025 1.025 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.048 0.952 36 H 0.110 0.890 37 H 0.155 0.845 38 H 0.034 0.966 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.121 0.879 42 H 0.235 0.765 43 H 0.247 0.753 44 H 0.125 0.875 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.959 -15.332 -6.896 20.631 hybrid contribution -0.371 2.166 -1.250 2.528 sum 11.588 -13.166 -8.145 19.338 Atomic orbital electron populations 1.22247 0.87527 1.01697 0.99451 1.61950 1.07897 1.15086 1.41663 1.19389 0.93779 0.83883 0.94682 1.21503 1.34621 0.97446 1.02392 0.92136 1.25901 0.95052 0.98059 1.00671 1.70085 1.39509 1.11846 1.36100 0.85344 0.78119 0.78151 0.79075 1.18849 1.20313 1.20362 1.22808 0.97289 0.98583 0.91659 1.21584 0.93721 0.91713 0.85950 0.92038 1.86626 1.75629 1.33110 1.40056 1.22542 0.90815 0.99859 0.95880 1.60390 1.01957 1.32119 1.35897 1.21334 0.92541 0.98344 0.90232 1.20960 0.94072 0.89831 1.07145 1.21264 1.00826 0.98413 0.94115 1.21046 0.77388 0.80089 0.91882 1.43845 1.52511 1.30877 1.13690 1.90723 1.57439 1.59122 1.38718 1.23074 1.03455 0.98514 0.93360 1.22835 1.01301 0.99312 0.95797 0.90054 0.92616 0.97094 0.97666 1.02503 0.92729 0.95736 0.88634 0.77434 0.95156 0.89030 0.84451 0.96605 0.90783 0.86065 0.87888 0.76509 0.75291 0.87550 0.88580 0.89342 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.35 127.69 1.19 2.69 16 2 N -0.54 -23.59 4.63 -927.04 -4.29 -27.87 16 3 C 0.21 11.31 4.55 85.55 0.39 11.70 16 4 C -0.52 -30.15 8.40 25.60 0.22 -29.94 16 5 H 0.06 3.47 7.16 -2.91 -0.02 3.45 16 6 C 0.00 0.05 5.46 84.66 0.46 0.51 16 7 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 9 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.03 0.88 4.64 86.31 0.40 1.28 16 13 C 0.13 4.24 3.26 30.59 0.10 4.34 16 14 H 0.06 2.47 6.67 -2.39 -0.02 2.46 16 15 O -0.55 -18.09 13.15 -148.98 -1.96 -20.04 16 16 C 0.04 0.99 5.35 86.30 0.46 1.45 16 17 N -0.67 -16.15 6.37 -513.91 -3.27 -19.42 16 18 C 0.10 2.33 5.56 86.30 0.48 2.81 16 19 C -0.12 -2.28 1.27 -52.18 -0.07 -2.35 16 20 C -0.11 -1.68 5.62 29.85 0.17 -1.52 16 21 C 0.51 9.85 8.01 87.66 0.70 10.55 16 22 N -0.85 -10.22 8.87 -173.53 -1.54 -11.76 16 23 O -0.58 -16.20 16.07 -3.02 -0.05 -16.25 16 24 C -0.15 -2.43 9.90 30.60 0.30 -2.13 16 25 C -0.15 -2.87 8.84 30.59 0.27 -2.60 16 26 H 0.08 2.51 8.13 -2.38 -0.02 2.49 16 27 H 0.05 2.35 6.68 -2.38 -0.02 2.34 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.01 0.31 6.57 -2.39 -0.02 0.29 16 30 H -0.04 -2.51 8.12 -2.38 -0.02 -2.53 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.02 0.87 8.00 -2.38 -0.02 0.85 16 33 H 0.10 2.60 7.93 -2.39 -0.02 2.58 16 34 H 0.38 9.24 9.05 -74.05 -0.67 8.57 16 35 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.34 8.35 7.26 -89.69 -0.65 7.70 16 38 H 0.02 0.41 8.13 -2.38 -0.02 0.39 16 39 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 40 H 0.12 1.32 7.93 -2.39 -0.02 1.30 16 41 H 0.10 1.55 6.69 -2.39 -0.02 1.54 16 42 H 0.40 4.45 8.93 -92.71 -0.83 3.62 16 43 H 0.42 2.61 8.83 -92.71 -0.82 1.79 16 44 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 45 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -74.81 382.85 -5.69 -80.50 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -1.97 Total: 27.46 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.08 Total: -3.19 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -8.82 Total: -115.28 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -2.01 Total: -36.29 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.81 -5.69 -80.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261437843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.976 kcal (2) G-P(sol) polarization free energy of solvation -74.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds