Wall clock time and date at job start Tue Mar 31 2020 03:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00056 * 2 1 4 4 C 1.50701 * 109.47726 * 293.96020 * 3 2 1 5 5 H 1.07997 * 119.99605 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00254 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00264 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 120.00021 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47195 * 90.00303 * 8 6 4 10 10 H 1.48500 * 109.47005 * 210.00271 * 8 6 4 11 11 H 1.48499 * 109.47054 * 330.00191 * 8 6 4 12 12 C 1.46895 * 111.00301 * 123.96058 * 2 1 3 13 13 C 1.53005 * 109.47115 * 164.18135 * 12 2 1 14 14 H 1.08998 * 109.47256 * 59.25226 * 13 12 2 15 15 O 1.42898 * 109.47065 * 299.25223 * 13 12 2 16 16 C 1.52995 * 109.46737 * 179.25467 * 13 12 2 17 17 N 1.46901 * 109.47158 * 184.99863 * 16 13 12 18 18 C 1.46901 * 111.00269 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47003 * 184.65216 * 18 17 16 20 20 H 1.09005 * 109.40164 * 56.55388 * 19 18 17 21 21 C 1.53068 * 109.40406 * 296.72502 * 19 18 17 22 22 C 1.53164 * 108.52588 * 190.99351 * 21 19 18 23 23 C 1.52920 * 108.62606 * 67.57604 * 22 21 19 24 24 N 1.45760 * 110.48638 * 309.24321 * 23 22 21 25 25 C 1.33349 * 124.10726 * 19.08174 * 24 23 22 26 26 O 1.21280 * 118.24768 * 177.77615 * 25 24 23 27 27 H 1.09001 * 109.47073 * 301.23655 * 1 2 3 28 28 H 1.08997 * 109.47332 * 61.23558 * 1 2 3 29 29 H 1.09000 * 109.47146 * 181.24089 * 1 2 3 30 30 H 1.09002 * 109.47191 * 53.95733 * 3 2 1 31 31 H 1.09001 * 109.47131 * 173.95645 * 3 2 1 32 32 H 0.97000 * 120.00284 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47073 * 44.18054 * 12 2 1 34 34 H 1.08998 * 109.47040 * 284.18234 * 12 2 1 35 35 H 0.96703 * 113.99765 * 300.00741 * 15 13 12 36 36 H 1.09001 * 109.47435 * 64.99820 * 16 13 12 37 37 H 1.09000 * 109.47355 * 304.99828 * 16 13 12 38 38 H 1.00902 * 111.00030 * 56.04450 * 17 16 13 39 39 H 1.08996 * 109.46906 * 64.65397 * 18 17 16 40 40 H 1.08996 * 109.47057 * 304.64857 * 18 17 16 41 41 H 1.08993 * 109.67161 * 310.79044 * 21 19 18 42 42 H 1.08998 * 109.67252 * 71.32252 * 21 19 18 43 43 H 1.08994 * 109.62544 * 307.83695 * 22 21 19 44 44 H 1.09002 * 109.62297 * 187.31579 * 22 21 19 45 45 H 1.09004 * 109.29895 * 188.93883 * 23 22 21 46 46 H 1.08999 * 109.30427 * 69.55731 * 23 22 21 47 47 H 0.97003 * 117.94407 * 199.09982 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0473 -1.2983 5 1 1.0745 1.5115 -2.0487 6 6 2.0276 3.3492 -1.5287 7 7 1.7151 3.9389 -2.6620 8 14 3.0009 4.2758 -0.2311 9 1 4.4533 4.0623 -0.4555 10 1 2.6936 5.7257 -0.3234 11 1 2.6296 3.7759 1.1170 12 6 1.9955 -0.7661 1.1374 13 6 3.4740 -1.0803 0.9001 14 1 4.0296 -0.1495 0.7865 15 8 3.6097 -1.8640 -0.2871 16 6 4.0270 -1.8621 2.0932 17 7 5.4725 -2.0601 1.9215 18 6 6.0393 -2.8085 3.0513 19 6 7.5590 -2.8941 2.8952 20 1 7.9721 -1.8884 2.8164 21 6 7.8963 -3.6832 1.6278 22 6 9.3960 -3.9946 1.6331 23 6 9.6866 -4.9775 2.7680 24 7 9.1123 -4.4971 4.0186 25 6 8.1456 -3.5817 4.0945 26 8 7.7171 -3.2890 5.1907 27 1 -0.3633 0.5329 0.8787 28 1 -0.3634 0.4945 -0.9008 29 1 -0.3633 -1.0274 0.0223 30 1 1.5611 1.9273 0.8310 31 1 3.0797 1.3444 0.1082 32 1 1.9897 4.8550 -2.8239 33 1 1.4377 -1.6971 1.2378 34 1 1.8906 -0.1796 2.0502 35 1 3.1397 -2.7085 -0.2568 36 1 3.5322 -2.8315 2.1534 37 1 3.8434 -1.3030 3.0107 38 1 5.9462 -1.1777 1.7986 39 1 5.6187 -3.8138 3.0688 40 1 5.7981 -2.2974 3.9833 41 1 7.3284 -4.6133 1.6126 42 1 7.6502 -3.0879 0.7485 43 1 9.9601 -3.0756 1.7918 44 1 9.6804 -4.4414 0.6805 45 1 10.7651 -5.0845 2.8845 46 1 9.2557 -5.9483 2.5231 47 1 9.4550 -4.8663 4.8476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326600329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:43 Heat of formation + Delta-G solvation = -85.423119 kcal Electronic energy + Delta-G solvation = -24689.298976 eV Core-core repulsion = 21099.652534 eV Total energy + Delta-G solvation = -3589.646443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75029 -38.28655 -36.86434 -36.30927 -35.23838 -33.09693 -32.40301 -30.77685 -29.34497 -27.95512 -26.52087 -25.04507 -23.43399 -22.81960 -22.26570 -21.55335 -19.91818 -19.44259 -17.64122 -16.95511 -16.61011 -16.44610 -15.75491 -15.57041 -15.18623 -14.95578 -14.60385 -14.52053 -14.16406 -14.11671 -13.82335 -13.75310 -13.30231 -13.04532 -12.79814 -12.56208 -12.34256 -12.00951 -11.71539 -11.62088 -11.51823 -11.31684 -11.20988 -11.07286 -11.04853 -10.75033 -10.49125 -10.16179 -10.00883 -9.86684 -9.52353 -9.47312 -9.18135 -8.53312 -8.48849 -7.31817 -6.01565 -3.98040 2.31557 2.87786 3.29595 3.36802 3.37708 3.86684 4.25456 4.33710 4.40787 4.44159 4.44918 4.70675 4.77807 4.88745 4.96086 5.01984 5.17842 5.22212 5.28249 5.30559 5.37633 5.48486 5.53979 5.57507 5.61768 5.64805 5.67517 5.84900 5.94300 5.95127 6.05099 6.26013 6.37950 6.39928 6.67467 6.82376 6.87352 6.93467 6.99304 7.22683 7.62487 7.87803 7.90490 8.06057 8.20368 8.69936 9.07898 9.60211 11.11808 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.002818 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.848997 B = 9934.643692 C =10390.401566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.504 4.504 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.022 3.978 13 C 0.118 3.882 14 H 0.097 0.903 15 O -0.529 6.529 16 C 0.028 3.972 17 N -0.676 5.676 18 C 0.074 3.926 19 C -0.101 4.101 20 H 0.103 0.897 21 C -0.109 4.109 22 C -0.141 4.141 23 C 0.109 3.891 24 N -0.721 5.721 25 C 0.524 3.476 26 O -0.555 6.555 27 H 0.010 0.990 28 H 0.079 0.921 29 H 0.046 0.954 30 H -0.015 1.015 31 H 0.024 0.976 32 H 0.263 0.737 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.362 0.638 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.343 0.657 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.470 -19.219 12.005 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.244 5.244 3 C 0.035 3.965 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.057 3.943 14 H 0.115 0.885 15 O -0.332 6.332 16 C -0.102 4.102 17 N -0.307 5.307 18 C -0.055 4.055 19 C -0.122 4.122 20 H 0.121 0.879 21 C -0.147 4.147 22 C -0.179 4.179 23 C -0.016 4.016 24 N -0.373 5.373 25 C 0.311 3.689 26 O -0.433 6.433 27 H 0.029 0.971 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.003 0.997 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.207 0.793 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.161 0.839 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 14.616 -19.065 11.235 26.521 hybrid contribution 0.163 1.077 2.651 2.866 sum 14.779 -17.988 13.886 27.108 Atomic orbital electron populations 1.22232 0.88161 0.99296 1.01255 1.61849 1.06977 1.16384 1.39210 1.20227 0.94949 0.84099 0.97209 1.21020 1.35357 0.97061 1.00819 0.90107 1.24896 0.95855 0.97386 0.95249 1.69893 1.47074 1.13252 1.23830 0.86894 0.81024 0.79325 0.82700 1.20077 1.21212 1.19450 1.22747 0.96148 0.98522 0.93359 1.21847 0.94356 0.94141 0.83909 0.88507 1.86688 1.75272 1.33758 1.37440 1.22727 0.88707 1.00657 0.98096 1.60399 1.03324 1.25319 1.41636 1.21783 0.91309 0.99720 0.92727 1.21211 0.97021 1.00827 0.93153 0.87873 1.21591 0.94558 1.00901 0.97661 1.21919 0.97743 0.99780 0.98458 1.21429 0.98432 0.97683 0.84012 1.45472 1.39069 1.42602 1.10158 1.20135 0.78865 0.78921 0.91012 1.90757 1.60047 1.63616 1.28911 0.97147 0.90193 0.93525 0.99715 0.95796 0.92719 0.91627 0.95295 0.79250 0.90760 0.94545 0.83918 0.90896 0.93827 0.91081 0.89028 0.91007 0.89498 0.90678 0.91556 0.76698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.33 60.06 0.56 1.31 16 2 N -0.52 -10.93 4.59 -244.38 -1.12 -12.05 16 3 C 0.16 3.97 3.64 -4.98 -0.02 3.95 16 4 C -0.50 -14.58 9.09 -34.44 -0.31 -14.89 16 5 H 0.08 2.55 7.34 -52.49 -0.39 2.16 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 8 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 12 C 0.02 0.36 4.63 -3.82 -0.02 0.34 16 13 C 0.12 1.79 3.16 -26.73 -0.08 1.71 16 14 H 0.10 1.70 6.57 -51.93 -0.34 1.36 16 15 O -0.53 -8.63 13.16 -35.23 -0.46 -9.10 16 16 C 0.03 0.33 5.32 -3.83 -0.02 0.31 16 17 N -0.68 -7.49 6.08 -113.78 -0.69 -8.19 16 18 C 0.07 0.77 4.87 -3.82 -0.02 0.75 16 19 C -0.10 -0.90 2.53 -91.99 -0.23 -1.13 16 20 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.11 -0.79 5.05 -26.61 -0.13 -0.92 16 22 C -0.14 -0.72 6.02 -26.69 -0.16 -0.88 16 23 C 0.11 0.49 7.16 -4.48 -0.03 0.46 16 24 N -0.72 -5.15 5.45 -61.38 -0.33 -5.48 16 25 C 0.52 5.41 7.29 -11.87 -0.09 5.32 16 26 O -0.56 -8.00 16.92 5.56 0.09 -7.91 16 27 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 28 H 0.08 1.71 6.89 -51.93 -0.36 1.35 16 29 H 0.05 0.75 7.97 -51.93 -0.41 0.33 16 30 H -0.01 -0.37 7.17 -51.93 -0.37 -0.74 16 31 H 0.02 0.59 5.81 -51.93 -0.30 0.29 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 0.91 7.88 -51.93 -0.41 0.51 16 34 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 35 H 0.36 4.58 9.05 45.56 0.41 4.99 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.34 3.82 8.67 -39.29 -0.34 3.48 16 39 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 40 H 0.04 0.52 7.67 -51.93 -0.40 0.12 16 41 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 43 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.40 2.47 8.80 -40.82 -0.36 2.11 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -34.93 371.48 -8.96 -43.90 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.49 Total: 5.15 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.66 Total: -1.80 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -1.37 Total: -52.90 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.37 Total: -17.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.93 -8.96 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326600329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.526 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds