Wall clock time and date at job start Tue Mar 31 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99901 * 2 1 4 4 C 1.50696 * 109.47341 * 293.95682 * 3 2 1 5 5 H 1.08008 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00114 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00170 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47219 * 59.99691 * 8 6 4 10 10 H 1.48498 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47214 * 299.99599 * 8 6 4 12 12 C 1.46894 * 110.99955 * 123.95540 * 2 1 3 13 13 C 1.53003 * 109.47283 * 66.04903 * 12 2 1 14 14 H 1.09004 * 109.47149 * 305.00089 * 13 12 2 15 15 O 1.42902 * 109.47042 * 64.99584 * 13 12 2 16 16 C 1.52997 * 109.47071 * 184.99927 * 13 12 2 17 17 N 1.46904 * 109.46950 * 180.02562 * 16 13 12 18 18 C 1.46899 * 111.00029 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47254 * 179.97438 * 18 17 16 20 20 H 1.09003 * 109.40296 * 305.00197 * 19 18 17 21 21 C 1.53063 * 109.40415 * 185.16963 * 19 18 17 22 22 C 1.53290 * 108.46185 * 190.89909 * 21 19 18 23 23 C 1.52924 * 108.61081 * 67.62453 * 22 21 19 24 24 N 1.45752 * 110.48525 * 309.23502 * 23 22 21 25 25 C 1.33355 * 124.11395 * 19.09251 * 24 23 22 26 26 O 1.21274 * 118.25101 * 177.75474 * 25 24 23 27 27 H 1.08997 * 109.46962 * 296.04243 * 1 2 3 28 28 H 1.09003 * 109.47103 * 56.04365 * 1 2 3 29 29 H 1.09003 * 109.46735 * 176.04315 * 1 2 3 30 30 H 1.09003 * 109.47141 * 53.95361 * 3 2 1 31 31 H 1.09000 * 109.47139 * 173.95135 * 3 2 1 32 32 H 0.96994 * 120.00461 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47742 * 306.04590 * 12 2 1 34 34 H 1.09010 * 109.46775 * 186.04408 * 12 2 1 35 35 H 0.96695 * 113.99730 * 60.00759 * 15 13 12 36 36 H 1.08995 * 109.47319 * 59.99998 * 16 13 12 37 37 H 1.09003 * 109.47435 * 299.99322 * 16 13 12 38 38 H 1.00908 * 110.99583 * 303.94989 * 17 16 13 39 39 H 1.09002 * 109.47043 * 299.99792 * 18 17 16 40 40 H 1.09001 * 109.47354 * 59.99854 * 18 17 16 41 41 H 1.09001 * 109.67800 * 310.70725 * 21 19 18 42 42 H 1.09002 * 109.67398 * 71.24100 * 21 19 18 43 43 H 1.09008 * 109.64330 * 307.88338 * 22 21 19 44 44 H 1.08995 * 109.62666 * 187.35818 * 22 21 19 45 45 H 1.08996 * 109.29682 * 188.92359 * 23 22 21 46 46 H 1.08993 * 109.29829 * 69.54538 * 23 22 21 47 47 H 0.97007 * 117.94241 * 199.07955 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5288 7 7 2.7128 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1385 9 1 0.1066 4.2238 -3.2863 10 1 2.1158 5.5730 -3.1385 11 1 2.1755 3.4289 -4.2703 12 6 1.9954 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5532 -2.3390 0.8431 15 8 2.2956 -2.7695 -0.1802 16 6 2.0700 -3.0199 2.2130 17 7 1.7211 -4.4378 2.0520 18 6 2.1276 -5.2169 3.2292 19 6 1.7480 -6.6849 3.0253 20 1 0.6834 -6.7560 2.8026 21 6 2.0541 -7.4714 4.3022 22 6 1.9283 -8.9675 3.9927 23 6 3.0538 -9.3643 3.0364 24 7 3.0954 -8.4598 1.8943 25 6 2.5362 -7.2492 1.8782 26 8 2.6711 -6.5677 0.8842 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 1.5611 1.9274 0.8309 31 1 3.0797 1.3444 0.1083 32 1 2.9874 4.9177 -0.7772 33 1 1.5612 -0.3873 2.0628 34 1 3.0798 -0.6611 1.1755 35 1 3.2601 -2.7167 -0.1361 36 1 1.5634 -2.6180 3.0904 37 1 3.1483 -2.9237 2.3400 38 1 0.7352 -4.5490 1.8681 39 1 3.2062 -5.1355 3.3641 40 1 1.6207 -4.8304 4.1135 41 1 3.0675 -7.2490 4.6362 42 1 1.3422 -7.1982 5.0810 43 1 0.9639 -9.1650 3.5245 44 1 2.0136 -9.5408 4.9157 45 1 2.8851 -10.3819 2.6841 46 1 4.0065 -9.3223 3.5641 47 1 3.5592 -8.7569 1.0957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326600331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:48 Heat of formation + Delta-G solvation = -81.591220 kcal Electronic energy + Delta-G solvation = -24567.551826 eV Core-core repulsion = 20978.071548 eV Total energy + Delta-G solvation = -3589.480279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55102 -38.10616 -36.58864 -36.15553 -35.05915 -33.10729 -32.44118 -30.65301 -29.19180 -27.10803 -26.41966 -24.99901 -23.56368 -23.18348 -22.09004 -21.16337 -20.04898 -19.38945 -17.38678 -16.80679 -16.43254 -16.09170 -15.64459 -15.40306 -15.12786 -14.94439 -14.45376 -14.28094 -14.21831 -14.06206 -13.91350 -13.49047 -13.28670 -12.94924 -12.67871 -12.33221 -11.89035 -11.84840 -11.70204 -11.66819 -11.35822 -11.27720 -11.15485 -10.97333 -10.81711 -10.66892 -10.60045 -10.17234 -9.88206 -9.68467 -9.42938 -9.21620 -9.00045 -8.37427 -8.20233 -7.10486 -5.96795 -3.97461 2.66121 3.08483 3.38943 3.41940 3.46262 3.87383 4.23174 4.25925 4.37311 4.44930 4.50396 4.80056 4.86792 4.97775 4.99690 5.04857 5.15426 5.18387 5.28004 5.32503 5.35682 5.38729 5.46894 5.52873 5.57398 5.69763 5.74835 5.79113 5.83793 6.14626 6.28081 6.38271 6.53845 6.63372 6.83401 6.99675 7.19926 7.34734 7.39118 7.41326 7.87269 8.14575 8.24426 8.26883 8.36278 8.63383 9.10420 9.66359 11.14181 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.041887 B = 0.002263 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.305607 B =12367.504866 C =12626.639182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.025 3.975 13 C 0.118 3.882 14 H 0.090 0.910 15 O -0.531 6.531 16 C 0.028 3.972 17 N -0.657 5.657 18 C 0.077 3.923 19 C -0.100 4.100 20 H 0.100 0.900 21 C -0.120 4.120 22 C -0.136 4.136 23 C 0.111 3.889 24 N -0.732 5.732 25 C 0.512 3.488 26 O -0.501 6.501 27 H 0.007 0.993 28 H 0.074 0.926 29 H 0.046 0.954 30 H -0.012 1.012 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.367 0.633 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.338 0.662 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 -27.835 14.455 31.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.105 4.105 13 C 0.058 3.942 14 H 0.108 0.892 15 O -0.334 6.334 16 C -0.102 4.102 17 N -0.288 5.288 18 C -0.053 4.053 19 C -0.122 4.122 20 H 0.118 0.882 21 C -0.158 4.158 22 C -0.174 4.174 23 C -0.014 4.014 24 N -0.388 5.388 25 C 0.297 3.703 26 O -0.373 6.373 27 H 0.025 0.975 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.006 0.994 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.213 0.787 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.993 -27.659 13.168 30.649 hybrid contribution -0.349 1.152 0.781 1.435 sum -1.342 -26.507 13.949 29.983 Atomic orbital electron populations 1.22253 0.89122 0.99536 1.00284 1.62003 1.06721 1.17331 1.39303 1.19734 0.95277 0.81665 0.96531 1.21149 1.34616 0.96821 1.01693 0.91832 1.25001 0.95370 0.97370 0.97029 1.69951 1.38560 1.11459 1.34155 0.86538 0.78660 0.78213 0.83868 1.20318 1.21436 1.20099 1.22741 1.00481 0.94110 0.93119 1.21825 0.97452 0.90351 0.84587 0.89221 1.86611 1.22784 1.83881 1.40156 1.22714 1.01372 0.88313 0.97772 1.60270 1.23324 1.07935 1.37232 1.21775 1.01112 0.90653 0.91781 1.21289 1.01126 0.96003 0.93733 0.88169 1.21690 1.03010 0.94306 0.96777 1.21853 0.99058 0.96645 0.99821 1.21304 0.98973 0.93321 0.87758 1.45582 1.58265 1.17178 1.17731 1.19965 0.79950 0.80896 0.89525 1.90916 1.57826 1.55880 1.32667 0.97472 0.90708 0.93482 0.99400 0.95379 0.92958 0.95720 0.91213 0.78671 0.95162 0.90942 0.84396 0.91027 0.94792 0.90935 0.90595 0.90912 0.89804 0.90918 0.92037 0.76788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.14 60.07 0.55 1.31 16 2 N -0.53 -12.15 4.70 -244.37 -1.15 -13.30 16 3 C 0.19 5.26 4.72 -4.98 -0.02 5.23 16 4 C -0.50 -14.76 8.46 -34.44 -0.29 -15.05 16 5 H 0.06 1.85 7.12 -52.48 -0.37 1.48 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 8 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.03 0.47 4.59 -3.83 -0.02 0.45 16 13 C 0.12 1.90 3.13 -26.73 -0.08 1.81 16 14 H 0.09 1.47 6.34 -51.93 -0.33 1.14 16 15 O -0.53 -9.77 13.15 -35.23 -0.46 -10.23 16 16 C 0.03 0.37 5.35 -3.82 -0.02 0.35 16 17 N -0.66 -8.19 4.85 -113.78 -0.55 -8.74 16 18 C 0.08 0.74 4.95 -3.83 -0.02 0.72 16 19 C -0.10 -0.81 2.60 -91.99 -0.24 -1.05 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.12 -0.60 5.32 -26.55 -0.14 -0.74 16 22 C -0.14 -0.51 6.02 -26.62 -0.16 -0.67 16 23 C 0.11 0.47 7.16 -4.48 -0.03 0.44 16 24 N -0.73 -5.61 5.45 -61.39 -0.33 -5.94 16 25 C 0.51 5.52 7.29 -11.87 -0.09 5.44 16 26 O -0.50 -7.92 15.98 5.56 0.09 -7.83 16 27 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 1.67 6.76 -51.93 -0.35 1.32 16 29 H 0.05 0.86 6.37 -51.93 -0.33 0.53 16 30 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 31 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.02 0.45 8.12 -51.93 -0.42 0.02 16 34 H 0.07 1.29 7.93 -51.92 -0.41 0.88 16 35 H 0.37 5.93 9.04 45.56 0.41 6.34 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.34 4.07 8.73 -39.29 -0.34 3.73 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.29 8.12 -51.92 -0.42 -0.13 16 44 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.40 2.92 8.80 -40.82 -0.36 2.56 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -35.72 373.69 -9.27 -44.99 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.55 Total: 5.12 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.66 Total: -0.29 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -1.30 Total: -54.73 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.37 Total: -18.07 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.72 -9.27 -44.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326600331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.600 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds