Wall clock time and date at job start Tue Mar 31 2020 03:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99901 * 2 1 4 4 C 1.50696 * 109.47341 * 293.95682 * 3 2 1 5 5 H 1.08008 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00114 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00170 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47219 * 59.99691 * 8 6 4 10 10 H 1.48498 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47214 * 299.99599 * 8 6 4 12 12 C 1.46894 * 110.99955 * 123.95540 * 2 1 3 13 13 C 1.53003 * 109.47283 * 66.04903 * 12 2 1 14 14 H 1.09004 * 109.47149 * 305.00089 * 13 12 2 15 15 O 1.42902 * 109.47042 * 64.99584 * 13 12 2 16 16 C 1.52997 * 109.47071 * 184.99927 * 13 12 2 17 17 N 1.46904 * 109.46950 * 180.02562 * 16 13 12 18 18 C 1.46899 * 111.00029 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47254 * 179.97438 * 18 17 16 20 20 H 1.09003 * 109.40296 * 305.00197 * 19 18 17 21 21 C 1.53063 * 109.40415 * 185.16963 * 19 18 17 22 22 C 1.53290 * 108.46185 * 190.89909 * 21 19 18 23 23 C 1.52924 * 108.61081 * 67.62453 * 22 21 19 24 24 N 1.45752 * 110.48525 * 309.23502 * 23 22 21 25 25 C 1.33355 * 124.11395 * 19.09251 * 24 23 22 26 26 O 1.21274 * 118.25101 * 177.75474 * 25 24 23 27 27 H 1.08997 * 109.46962 * 296.04243 * 1 2 3 28 28 H 1.09003 * 109.47103 * 56.04365 * 1 2 3 29 29 H 1.09003 * 109.46735 * 176.04315 * 1 2 3 30 30 H 1.09003 * 109.47141 * 53.95361 * 3 2 1 31 31 H 1.09000 * 109.47139 * 173.95135 * 3 2 1 32 32 H 0.96994 * 120.00461 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47742 * 306.04590 * 12 2 1 34 34 H 1.09010 * 109.46775 * 186.04408 * 12 2 1 35 35 H 0.96695 * 113.99730 * 60.00759 * 15 13 12 36 36 H 1.08995 * 109.47319 * 59.99998 * 16 13 12 37 37 H 1.09003 * 109.47435 * 299.99322 * 16 13 12 38 38 H 1.00908 * 110.99583 * 303.94989 * 17 16 13 39 39 H 1.09002 * 109.47043 * 299.99792 * 18 17 16 40 40 H 1.09001 * 109.47354 * 59.99854 * 18 17 16 41 41 H 1.09001 * 109.67800 * 310.70725 * 21 19 18 42 42 H 1.09002 * 109.67398 * 71.24100 * 21 19 18 43 43 H 1.09008 * 109.64330 * 307.88338 * 22 21 19 44 44 H 1.08995 * 109.62666 * 187.35818 * 22 21 19 45 45 H 1.08996 * 109.29682 * 188.92359 * 23 22 21 46 46 H 1.08993 * 109.29829 * 69.54538 * 23 22 21 47 47 H 0.97007 * 117.94241 * 199.07955 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5288 7 7 2.7128 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1385 9 1 0.1066 4.2238 -3.2863 10 1 2.1158 5.5730 -3.1385 11 1 2.1755 3.4289 -4.2703 12 6 1.9954 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5532 -2.3390 0.8431 15 8 2.2956 -2.7695 -0.1802 16 6 2.0700 -3.0199 2.2130 17 7 1.7211 -4.4378 2.0520 18 6 2.1276 -5.2169 3.2292 19 6 1.7480 -6.6849 3.0253 20 1 0.6834 -6.7560 2.8026 21 6 2.0541 -7.4714 4.3022 22 6 1.9283 -8.9675 3.9927 23 6 3.0538 -9.3643 3.0364 24 7 3.0954 -8.4598 1.8943 25 6 2.5362 -7.2492 1.8782 26 8 2.6711 -6.5677 0.8842 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 1.5611 1.9274 0.8309 31 1 3.0797 1.3444 0.1083 32 1 2.9874 4.9177 -0.7772 33 1 1.5612 -0.3873 2.0628 34 1 3.0798 -0.6611 1.1755 35 1 3.2601 -2.7167 -0.1361 36 1 1.5634 -2.6180 3.0904 37 1 3.1483 -2.9237 2.3400 38 1 0.7352 -4.5490 1.8681 39 1 3.2062 -5.1355 3.3641 40 1 1.6207 -4.8304 4.1135 41 1 3.0675 -7.2490 4.6362 42 1 1.3422 -7.1982 5.0810 43 1 0.9639 -9.1650 3.5245 44 1 2.0136 -9.5408 4.9157 45 1 2.8851 -10.3819 2.6841 46 1 4.0065 -9.3223 3.5641 47 1 3.5592 -8.7569 1.0957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326600331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:47 Heat of formation + Delta-G solvation = -112.550542 kcal Electronic energy + Delta-G solvation = -24568.894323 eV Core-core repulsion = 20978.071548 eV Total energy + Delta-G solvation = -3590.822776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24223 -39.52268 -37.51252 -37.25062 -36.34405 -34.62154 -33.85499 -31.53081 -30.41369 -29.00332 -27.66860 -26.25151 -24.72084 -24.09208 -22.73424 -22.66965 -21.73434 -19.94786 -18.56881 -18.03287 -17.66479 -17.20380 -17.00351 -16.66594 -16.31532 -15.96569 -15.82071 -15.75712 -15.11385 -14.99278 -14.86774 -14.66592 -14.40998 -14.10795 -13.84774 -13.62570 -13.30715 -13.24655 -12.91270 -12.68434 -12.57416 -12.52897 -12.41683 -12.36977 -12.08654 -11.99045 -11.83443 -11.73665 -11.62277 -11.40064 -10.62324 -10.62092 -10.47131 -9.86060 -9.09260 -8.95432 -8.21406 -6.31506 1.39842 1.43870 1.51744 1.87746 2.39716 2.49347 2.94272 3.10514 3.42200 3.71933 3.72829 3.81741 3.91896 3.96348 4.01765 4.17646 4.30886 4.33352 4.40348 4.47294 4.52937 4.61827 4.62985 4.68137 4.71618 4.76020 4.76866 4.83821 5.00562 5.05032 5.12080 5.13920 5.14568 5.17885 5.30139 5.37914 5.63655 6.00395 6.03635 6.12840 6.32170 6.50620 6.54617 6.63640 6.84051 7.03829 7.37908 7.50262 8.89414 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.041887 B = 0.002263 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.305607 B =12367.504866 C =12626.639182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.544 5.544 3 C 0.209 3.791 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.270 1.270 12 C 0.027 3.973 13 C 0.129 3.871 14 H 0.090 0.910 15 O -0.553 6.553 16 C 0.042 3.958 17 N -0.675 5.675 18 C 0.078 3.922 19 C -0.095 4.095 20 H 0.105 0.895 21 C -0.114 4.114 22 C -0.133 4.133 23 C 0.104 3.896 24 N -0.727 5.727 25 C 0.505 3.495 26 O -0.564 6.564 27 H 0.013 0.987 28 H 0.055 0.945 29 H 0.074 0.926 30 H -0.037 1.037 31 H 0.002 0.998 32 H 0.265 0.735 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.374 0.626 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.339 0.661 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 -29.580 15.553 33.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.268 5.268 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.195 1.195 12 C -0.102 4.102 13 C 0.069 3.931 14 H 0.107 0.893 15 O -0.358 6.358 16 C -0.089 4.089 17 N -0.306 5.306 18 C -0.051 4.051 19 C -0.117 4.117 20 H 0.123 0.877 21 C -0.153 4.153 22 C -0.171 4.171 23 C -0.020 4.020 24 N -0.380 5.380 25 C 0.291 3.709 26 O -0.441 6.441 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.093 0.907 30 H -0.020 1.020 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.221 0.779 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.157 0.843 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.832 -29.474 14.315 32.818 hybrid contribution -0.052 1.581 0.499 1.659 sum -1.884 -27.893 14.814 31.639 Atomic orbital electron populations 1.22227 0.87782 1.00999 0.99750 1.61917 1.08075 1.14957 1.41826 1.19383 0.93550 0.83843 0.94989 1.21439 1.34967 0.97541 1.02390 0.92197 1.25938 0.94991 0.98008 1.00850 1.70073 1.39276 1.11915 1.36211 0.85410 0.78868 0.77146 0.79033 1.19161 1.20559 1.19522 1.22820 1.00126 0.95293 0.92000 1.21758 0.97196 0.88705 0.85479 0.89259 1.86571 1.23574 1.84039 1.41607 1.22477 1.01310 0.88646 0.96426 1.60217 1.23524 1.07547 1.39270 1.21812 1.00622 0.91295 0.91394 1.21294 1.00770 0.95301 0.94315 0.87716 1.21697 1.03501 0.94711 0.95344 1.21886 0.98569 0.95924 1.00682 1.21608 1.00022 0.93444 0.86894 1.45674 1.56802 1.16726 1.18757 1.20508 0.79714 0.81218 0.89436 1.90882 1.60447 1.57821 1.34973 0.96804 0.92617 0.90703 1.01979 0.97982 0.92627 0.94708 0.91692 0.77905 0.93493 0.91159 0.84274 0.92108 0.92667 0.90915 0.88857 0.91087 0.87278 0.88928 0.90885 0.76936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.69 9.14 127.69 1.17 2.85 16 2 N -0.54 -25.30 4.70 -927.05 -4.36 -29.66 16 3 C 0.21 11.73 4.72 85.56 0.40 12.13 16 4 C -0.53 -31.33 8.46 25.60 0.22 -31.12 16 5 H 0.06 3.54 7.12 -2.91 -0.02 3.52 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 8 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.03 1.00 4.59 86.31 0.40 1.40 16 13 C 0.13 4.06 3.13 30.59 0.10 4.16 16 14 H 0.09 2.83 6.34 -2.39 -0.02 2.81 16 15 O -0.55 -20.50 13.15 -148.98 -1.96 -22.46 16 16 C 0.04 1.04 5.35 86.30 0.46 1.50 16 17 N -0.67 -16.35 4.85 -513.89 -2.49 -18.84 16 18 C 0.08 1.39 4.95 86.30 0.43 1.82 16 19 C -0.10 -1.40 2.60 -11.68 -0.03 -1.43 16 20 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 21 C -0.11 -0.83 5.32 30.71 0.16 -0.66 16 22 C -0.13 -0.57 6.02 30.67 0.18 -0.38 16 23 C 0.10 0.62 7.16 86.49 0.62 1.24 16 24 N -0.73 -10.45 5.45 -467.32 -2.55 -13.00 16 25 C 0.50 10.74 7.29 87.72 0.64 11.38 16 26 O -0.56 -18.37 15.98 -3.01 -0.05 -18.41 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 2.50 6.76 -2.39 -0.02 2.48 16 29 H 0.07 2.67 6.37 -2.39 -0.02 2.65 16 30 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 31 H 0.00 0.12 7.93 -2.39 -0.02 0.11 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.03 1.23 8.12 -2.39 -0.02 1.21 16 34 H 0.06 2.45 7.93 -2.38 -0.02 2.44 16 35 H 0.37 12.38 9.04 -74.06 -0.67 11.71 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.34 7.90 8.73 -89.69 -0.78 7.12 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 42 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.37 8.12 -2.38 -0.02 0.35 16 44 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.40 5.71 8.80 -92.70 -0.82 4.90 16 Total: -1.00 -78.99 373.69 -5.18 -84.17 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -1.30 Total: 24.36 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.21 Total: 3.35 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -9.11 Total: -119.04 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -2.01 Total: -40.88 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -78.99 -5.18 -84.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326600331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.382 kcal (2) G-P(sol) polarization free energy of solvation -78.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds