Wall clock time and date at job start Tue Mar 31 2020 03:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46910 * 110.99507 * 2 1 4 4 C 1.50699 * 109.47075 * 66.04707 * 3 2 1 5 5 H 1.08002 * 120.00036 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99998 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99821 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00019 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47160 * 59.99991 * 8 6 4 10 10 H 1.48500 * 109.46923 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46994 * 299.99846 * 8 6 4 12 12 C 1.46895 * 111.00079 * 236.04943 * 2 1 3 13 13 C 1.53006 * 109.46895 * 293.94847 * 12 2 1 14 14 H 1.09004 * 109.46726 * 60.00269 * 13 12 2 15 15 O 1.42899 * 109.46995 * 300.00392 * 13 12 2 16 16 C 1.53003 * 109.46875 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.46824 * 185.00202 * 16 13 12 18 18 C 1.46903 * 111.00127 * 179.97438 * 17 16 13 19 19 H 1.09003 * 109.79012 * 36.66479 * 18 17 16 20 20 C 1.53058 * 109.63178 * 276.16713 * 18 17 16 21 21 C 1.51784 * 110.74473 * 325.20823 * 20 18 17 22 22 C 1.51771 * 113.81575 * 293.19330 * 21 20 18 23 23 C 1.52483 * 110.94169 * 66.92915 * 22 21 20 24 24 N 1.47197 * 108.95540 * 273.65982 * 23 22 21 25 25 C 1.33372 * 120.42372 * 71.70185 * 24 23 22 26 26 O 1.21284 * 119.88889 * 179.97438 * 25 24 23 27 27 H 1.09007 * 109.46620 * 183.95460 * 1 2 3 28 28 H 1.08999 * 109.47290 * 303.94841 * 1 2 3 29 29 H 1.08999 * 109.47496 * 63.95324 * 1 2 3 30 30 H 1.09006 * 109.46544 * 186.04467 * 3 2 1 31 31 H 1.08994 * 109.47238 * 306.04561 * 3 2 1 32 32 H 0.97004 * 120.00222 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47214 * 173.95415 * 12 2 1 34 34 H 1.08999 * 109.47578 * 53.95002 * 12 2 1 35 35 H 0.96706 * 114.00097 * 299.99619 * 15 13 12 36 36 H 1.09001 * 109.46943 * 65.00257 * 16 13 12 37 37 H 1.08995 * 109.46954 * 305.00168 * 16 13 12 38 38 H 1.00902 * 110.99963 * 303.95131 * 17 16 13 39 39 H 1.09000 * 109.22121 * 85.54201 * 20 18 17 40 40 H 1.09005 * 109.21742 * 204.88452 * 20 18 17 41 41 H 1.08999 * 108.61590 * 54.31401 * 21 20 18 42 42 H 1.09002 * 108.61453 * 172.07610 * 21 20 18 43 43 H 1.08996 * 109.20006 * 187.36290 * 22 21 20 44 44 H 1.09004 * 109.19594 * 306.64618 * 22 21 20 45 45 H 1.08995 * 109.44626 * 153.82889 * 23 22 21 46 46 H 1.08992 * 109.47416 * 33.51343 * 23 22 21 47 47 H 0.96995 * 119.78857 * 251.97447 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5112 2.0488 6 6 2.0274 3.3493 1.5289 7 7 2.7125 4.0017 0.6154 8 14 1.5836 4.1865 3.1387 9 1 2.1754 3.4288 4.2704 10 1 2.1156 5.5730 3.1386 11 1 0.1065 4.2237 3.2865 12 6 1.9954 -0.7659 -1.1376 13 6 1.6315 -2.2426 -0.9703 14 1 0.5472 -2.3475 -0.9323 15 8 2.2010 -2.7390 0.2427 16 6 2.1804 -3.0404 -2.1549 17 7 1.7300 -4.4352 -2.0565 18 6 2.2386 -5.2331 -3.1802 19 1 3.2462 -4.9070 -3.4382 20 6 1.3172 -5.0627 -4.3905 21 6 -0.1278 -4.9157 -3.9496 22 6 -0.7050 -6.1673 -3.3142 23 6 -0.0241 -6.4663 -1.9829 24 7 1.1895 -7.2603 -2.2343 25 6 2.2606 -6.6975 -2.7956 26 8 3.2557 -7.3607 -2.9979 27 1 -0.3633 -1.0253 0.0709 28 1 -0.3634 0.5739 0.8525 29 1 -0.3634 0.4512 -0.9233 30 1 3.0797 1.3445 -0.1082 31 1 1.5610 1.9274 -0.8309 32 1 2.9870 4.9179 0.7773 33 1 3.0797 -0.6610 -1.1756 34 1 1.5611 -0.3872 -2.0628 35 1 3.1654 -2.6770 0.2787 36 1 3.2699 -3.0085 -2.1408 37 1 1.8162 -2.6057 -3.0856 38 1 2.0001 -4.8409 -1.1731 39 1 1.6152 -4.1736 -4.9461 40 1 1.4082 -5.9360 -5.0365 41 1 -0.1907 -4.0994 -3.2300 42 1 -0.7321 -4.6565 -4.8190 43 1 -1.7726 -6.0247 -3.1471 44 1 -0.5579 -7.0116 -3.9876 45 1 -0.7050 -7.0307 -1.3459 46 1 0.2459 -5.5300 -1.4946 47 1 1.2092 -8.1997 -1.9939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335350695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:48 Heat of formation + Delta-G solvation = -77.700361 kcal Electronic energy + Delta-G solvation = -25403.978162 eV Core-core repulsion = 21814.666603 eV Total energy + Delta-G solvation = -3589.311559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77275 -38.34672 -37.15584 -35.77868 -34.93353 -33.29214 -32.53376 -30.85941 -29.24291 -27.21858 -26.57841 -25.19520 -24.30235 -23.24382 -21.55644 -20.50872 -20.25156 -19.71942 -17.63176 -17.36445 -16.55695 -16.10156 -15.94830 -15.46158 -15.08767 -14.88458 -14.64654 -14.25895 -14.09852 -14.01026 -13.72324 -13.59492 -13.47500 -13.08829 -12.73780 -12.31851 -12.27906 -11.91422 -11.87848 -11.36823 -11.16916 -11.15245 -10.92301 -10.89766 -10.85001 -10.76405 -10.67168 -10.31828 -10.13444 -9.99225 -9.63605 -9.35184 -9.14665 -8.67727 -8.44224 -7.21877 -6.03590 -4.04744 2.31877 3.06365 3.33570 3.37347 3.40707 3.71337 4.14214 4.41014 4.54177 4.61383 4.65975 4.70611 4.82351 5.00549 5.02442 5.08343 5.25442 5.31097 5.33582 5.42070 5.46704 5.49519 5.59151 5.68857 5.72744 5.82775 5.85995 5.90137 6.03374 6.17720 6.26790 6.28870 6.36565 6.48103 6.60436 6.76001 6.95652 7.03354 7.25418 7.31155 7.78563 7.90896 7.97516 8.08518 8.18726 8.53968 9.03058 9.59551 11.07353 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.030608 B = 0.002718 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.586441 B =10300.746263 C =10394.002422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.024 3.976 13 C 0.115 3.885 14 H 0.104 0.896 15 O -0.547 6.547 16 C 0.022 3.978 17 N -0.666 5.666 18 C 0.070 3.930 19 H 0.078 0.922 20 C -0.105 4.105 21 C -0.113 4.113 22 C -0.131 4.131 23 C 0.088 3.912 24 N -0.715 5.715 25 C 0.519 3.481 26 O -0.556 6.556 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.008 0.992 30 H 0.027 0.973 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.369 0.631 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.351 0.649 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 -20.101 -9.374 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.055 3.945 14 H 0.122 0.878 15 O -0.351 6.351 16 C -0.107 4.107 17 N -0.300 5.300 18 C -0.043 4.043 19 H 0.096 0.904 20 C -0.143 4.143 21 C -0.151 4.151 22 C -0.170 4.170 23 C -0.035 4.035 24 N -0.366 5.366 25 C 0.304 3.696 26 O -0.434 6.434 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.007 0.993 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.215 0.785 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.172 0.828 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.139 0.861 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.414 -20.259 -9.287 23.191 hybrid contribution 1.004 0.686 0.038 1.216 sum -5.410 -19.573 -9.249 22.314 Atomic orbital electron populations 1.22245 0.88941 0.99609 1.00360 1.62026 1.06877 1.17381 1.38995 1.19737 0.95224 0.81635 0.96612 1.21132 1.34806 0.96870 1.01691 0.91833 1.24994 0.95300 0.97356 0.97011 1.69948 1.38429 1.11508 1.34152 0.86547 0.78706 0.78284 0.83802 1.20120 1.21397 1.20273 1.22699 1.00448 0.93810 0.93583 1.21973 0.98941 0.90998 0.82623 0.87810 1.86588 1.25074 1.84820 1.38588 1.22846 0.98172 0.88779 1.00928 1.60793 1.61860 1.02404 1.04968 1.22009 0.99200 0.89255 0.93857 0.90363 1.21313 0.95386 1.02276 0.95344 1.20963 0.94124 0.99157 1.00841 1.21590 0.99999 0.98402 0.97001 1.22245 0.85075 0.98740 0.97487 1.45916 1.14799 1.13926 1.61954 1.20516 0.82400 0.90077 0.76587 1.90768 1.32945 1.64847 1.54791 0.93383 0.90766 0.97363 0.95450 0.99315 0.92888 0.91340 0.95273 0.78477 0.94339 0.89827 0.82844 0.91003 0.91906 0.89558 0.92829 0.90931 0.92436 0.90607 0.86055 0.76754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.14 60.06 0.55 1.25 16 2 N -0.53 -10.98 4.62 -244.36 -1.13 -12.11 16 3 C 0.19 4.95 4.72 -4.97 -0.02 4.93 16 4 C -0.51 -14.17 8.46 -34.44 -0.29 -14.46 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.02 0.39 4.62 -3.82 -0.02 0.38 16 13 C 0.11 1.43 3.08 -26.73 -0.08 1.35 16 14 H 0.10 1.35 6.55 -51.93 -0.34 1.01 16 15 O -0.55 -7.48 12.72 -35.23 -0.45 -7.93 16 16 C 0.02 0.21 5.05 -3.83 -0.02 0.19 16 17 N -0.67 -5.69 2.14 -107.54 -0.23 -5.92 16 18 C 0.07 0.64 2.77 -68.48 -0.19 0.45 16 19 H 0.08 0.78 7.84 -51.93 -0.41 0.38 16 20 C -0.10 -0.84 5.30 -27.32 -0.14 -0.98 16 21 C -0.11 -0.82 5.19 -27.97 -0.15 -0.96 16 22 C -0.13 -0.84 5.72 -27.62 -0.16 -1.00 16 23 C 0.09 0.57 6.38 -3.93 -0.03 0.55 16 24 N -0.71 -5.75 5.28 -60.17 -0.32 -6.07 16 25 C 0.52 5.62 6.47 -11.25 -0.07 5.55 16 26 O -0.56 -8.35 17.92 5.55 0.10 -8.25 16 27 H 0.05 0.78 6.47 -51.93 -0.34 0.45 16 28 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 31 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.11 7.93 -51.93 -0.41 0.69 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.37 4.22 9.05 45.56 0.41 4.63 16 36 H 0.04 0.37 8.07 -51.93 -0.42 -0.05 16 37 H 0.08 0.77 7.97 -51.93 -0.41 0.36 16 38 H 0.35 3.26 7.40 -39.29 -0.29 2.97 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.53 7.86 -51.93 -0.41 0.12 16 41 H 0.09 0.70 6.76 -51.93 -0.35 0.35 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.40 8.05 -51.93 -0.42 -0.02 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.12 0.91 4.74 -51.93 -0.25 0.67 16 47 H 0.40 2.83 8.91 -40.82 -0.36 2.46 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -32.46 363.86 -8.77 -41.22 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.22 Total: 4.24 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.72 Total: -1.32 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.94 Total: -50.01 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.35 Total: -16.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.46 -8.77 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335350695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.476 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds