Wall clock time and date at job start Tue Mar 31 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46910 * 110.99507 * 2 1 4 4 C 1.50699 * 109.47075 * 66.04707 * 3 2 1 5 5 H 1.08002 * 120.00036 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99998 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99821 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00019 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47160 * 59.99991 * 8 6 4 10 10 H 1.48500 * 109.46923 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46994 * 299.99846 * 8 6 4 12 12 C 1.46895 * 111.00079 * 236.04943 * 2 1 3 13 13 C 1.53006 * 109.46895 * 293.94847 * 12 2 1 14 14 H 1.09004 * 109.46726 * 60.00269 * 13 12 2 15 15 O 1.42899 * 109.46995 * 300.00392 * 13 12 2 16 16 C 1.53003 * 109.46875 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.46824 * 185.00202 * 16 13 12 18 18 C 1.46903 * 111.00127 * 179.97438 * 17 16 13 19 19 H 1.09003 * 109.79012 * 36.66479 * 18 17 16 20 20 C 1.53058 * 109.63178 * 276.16713 * 18 17 16 21 21 C 1.51784 * 110.74473 * 325.20823 * 20 18 17 22 22 C 1.51771 * 113.81575 * 293.19330 * 21 20 18 23 23 C 1.52483 * 110.94169 * 66.92915 * 22 21 20 24 24 N 1.47197 * 108.95540 * 273.65982 * 23 22 21 25 25 C 1.33372 * 120.42372 * 71.70185 * 24 23 22 26 26 O 1.21284 * 119.88889 * 179.97438 * 25 24 23 27 27 H 1.09007 * 109.46620 * 183.95460 * 1 2 3 28 28 H 1.08999 * 109.47290 * 303.94841 * 1 2 3 29 29 H 1.08999 * 109.47496 * 63.95324 * 1 2 3 30 30 H 1.09006 * 109.46544 * 186.04467 * 3 2 1 31 31 H 1.08994 * 109.47238 * 306.04561 * 3 2 1 32 32 H 0.97004 * 120.00222 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47214 * 173.95415 * 12 2 1 34 34 H 1.08999 * 109.47578 * 53.95002 * 12 2 1 35 35 H 0.96706 * 114.00097 * 299.99619 * 15 13 12 36 36 H 1.09001 * 109.46943 * 65.00257 * 16 13 12 37 37 H 1.08995 * 109.46954 * 305.00168 * 16 13 12 38 38 H 1.00902 * 110.99963 * 303.95131 * 17 16 13 39 39 H 1.09000 * 109.22121 * 85.54201 * 20 18 17 40 40 H 1.09005 * 109.21742 * 204.88452 * 20 18 17 41 41 H 1.08999 * 108.61590 * 54.31401 * 21 20 18 42 42 H 1.09002 * 108.61453 * 172.07610 * 21 20 18 43 43 H 1.08996 * 109.20006 * 187.36290 * 22 21 20 44 44 H 1.09004 * 109.19594 * 306.64618 * 22 21 20 45 45 H 1.08995 * 109.44626 * 153.82889 * 23 22 21 46 46 H 1.08992 * 109.47416 * 33.51343 * 23 22 21 47 47 H 0.96995 * 119.78857 * 251.97447 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5112 2.0488 6 6 2.0274 3.3493 1.5289 7 7 2.7125 4.0017 0.6154 8 14 1.5836 4.1865 3.1387 9 1 2.1754 3.4288 4.2704 10 1 2.1156 5.5730 3.1386 11 1 0.1065 4.2237 3.2865 12 6 1.9954 -0.7659 -1.1376 13 6 1.6315 -2.2426 -0.9703 14 1 0.5472 -2.3475 -0.9323 15 8 2.2010 -2.7390 0.2427 16 6 2.1804 -3.0404 -2.1549 17 7 1.7300 -4.4352 -2.0565 18 6 2.2386 -5.2331 -3.1802 19 1 3.2462 -4.9070 -3.4382 20 6 1.3172 -5.0627 -4.3905 21 6 -0.1278 -4.9157 -3.9496 22 6 -0.7050 -6.1673 -3.3142 23 6 -0.0241 -6.4663 -1.9829 24 7 1.1895 -7.2603 -2.2343 25 6 2.2606 -6.6975 -2.7956 26 8 3.2557 -7.3607 -2.9979 27 1 -0.3633 -1.0253 0.0709 28 1 -0.3634 0.5739 0.8525 29 1 -0.3634 0.4512 -0.9233 30 1 3.0797 1.3445 -0.1082 31 1 1.5610 1.9274 -0.8309 32 1 2.9870 4.9179 0.7773 33 1 3.0797 -0.6610 -1.1756 34 1 1.5611 -0.3872 -2.0628 35 1 3.1654 -2.6770 0.2787 36 1 3.2699 -3.0085 -2.1408 37 1 1.8162 -2.6057 -3.0856 38 1 2.0001 -4.8409 -1.1731 39 1 1.6152 -4.1736 -4.9461 40 1 1.4082 -5.9360 -5.0365 41 1 -0.1907 -4.0994 -3.2300 42 1 -0.7321 -4.6565 -4.8190 43 1 -1.7726 -6.0247 -3.1471 44 1 -0.5579 -7.0116 -3.9876 45 1 -0.7050 -7.0307 -1.3459 46 1 0.2459 -5.5300 -1.4946 47 1 1.2092 -8.1997 -1.9939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335350695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:47 Heat of formation + Delta-G solvation = -104.267638 kcal Electronic energy + Delta-G solvation = -25405.130205 eV Core-core repulsion = 21814.666603 eV Total energy + Delta-G solvation = -3590.463602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54807 -39.50893 -38.09857 -37.11126 -35.78922 -34.59684 -33.98881 -31.78109 -30.34769 -28.97277 -27.70350 -26.41677 -25.16259 -24.47283 -22.75435 -21.79204 -21.18001 -20.46434 -18.55105 -18.39615 -18.10940 -17.19128 -17.04514 -16.73947 -16.29922 -15.98444 -15.79154 -15.45264 -15.36973 -14.97982 -14.71371 -14.53245 -14.37570 -14.19817 -13.83962 -13.74800 -13.26154 -13.14334 -13.04391 -12.77084 -12.62213 -12.52516 -12.46808 -12.32899 -11.98788 -11.79836 -11.58111 -11.46926 -11.44554 -11.35917 -11.00179 -10.62343 -10.60144 -10.06935 -9.41054 -8.91652 -8.19496 -6.29269 1.42201 1.45219 1.48092 1.53121 2.36592 2.41356 2.84198 3.13107 3.39393 3.44356 3.73519 3.90884 4.02508 4.10142 4.11911 4.17329 4.27973 4.39108 4.45558 4.48739 4.60280 4.70444 4.75407 4.79166 4.82297 4.90789 4.92622 5.11193 5.15308 5.19526 5.20997 5.26746 5.29684 5.35222 5.38361 5.66013 5.70185 5.72981 5.90010 6.07348 6.20232 6.29685 6.36063 6.67144 6.87258 6.97532 7.19947 7.40612 8.91205 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.030608 B = 0.002718 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.586441 B =10300.746263 C =10394.002422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.538 5.538 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.023 3.977 13 C 0.131 3.869 14 H 0.106 0.894 15 O -0.561 6.561 16 C 0.034 3.966 17 N -0.652 5.652 18 C 0.076 3.924 19 H 0.069 0.931 20 C -0.102 4.102 21 C -0.111 4.111 22 C -0.129 4.129 23 C 0.087 3.913 24 N -0.702 5.702 25 C 0.516 3.484 26 O -0.605 6.605 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.011 0.989 30 H 0.002 0.998 31 H -0.039 1.039 32 H 0.264 0.736 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.378 0.622 36 H 0.040 0.960 37 H 0.093 0.907 38 H 0.350 0.650 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.053 0.947 45 H 0.098 0.902 46 H 0.116 0.884 47 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 -20.953 -8.876 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.192 1.192 12 C -0.107 4.107 13 C 0.071 3.929 14 H 0.124 0.876 15 O -0.366 6.366 16 C -0.096 4.096 17 N -0.286 5.286 18 C -0.037 4.037 19 H 0.087 0.913 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.167 4.167 23 C -0.035 4.035 24 N -0.352 5.352 25 C 0.302 3.698 26 O -0.487 6.487 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.020 0.980 31 H -0.022 1.022 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.226 0.774 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.134 0.866 47 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.014 -21.135 -8.784 24.251 hybrid contribution 1.464 0.900 -0.149 1.725 sum -6.550 -20.235 -8.933 23.069 Atomic orbital electron populations 1.22224 0.87711 1.01284 0.99497 1.61927 1.08061 1.14610 1.41611 1.19382 0.93535 0.84160 0.94801 1.21462 1.34773 0.97454 1.02470 0.91998 1.25902 0.95041 0.98088 1.00634 1.70073 1.39433 1.11905 1.36226 0.85458 0.78877 0.77136 0.79296 1.19405 1.20898 1.19175 1.22831 1.00065 0.95608 0.92163 1.21782 0.99029 0.88628 0.83412 0.87624 1.86557 1.26094 1.84680 1.39273 1.22661 0.98184 0.88911 0.99855 1.60810 1.61357 1.01722 1.04707 1.21932 0.99153 0.88294 0.94341 0.91318 1.21312 0.95771 1.02341 0.94649 1.20957 0.93513 0.99393 1.01037 1.21577 1.00802 0.97791 0.96569 1.22375 0.84546 0.98623 0.98003 1.45945 1.14586 1.14365 1.60285 1.20773 0.82247 0.90531 0.76270 1.90745 1.34855 1.65980 1.57115 0.90090 0.92987 0.97082 0.98006 1.02177 0.92716 0.91835 0.94723 0.77404 0.94138 0.88879 0.83053 0.90356 0.92454 0.89989 0.92206 0.89418 0.92873 0.88362 0.86649 0.76152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 9.14 127.69 1.17 2.68 16 2 N -0.54 -22.25 4.62 -927.02 -4.28 -26.53 16 3 C 0.21 10.93 4.72 85.55 0.40 11.33 16 4 C -0.52 -29.63 8.46 25.60 0.22 -29.41 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 6 C 0.00 0.07 5.46 84.65 0.46 0.53 16 7 N -0.94 -56.21 13.29 21.45 0.28 -55.93 16 8 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 C 0.02 0.71 4.62 86.31 0.40 1.11 16 13 C 0.13 3.02 3.08 30.60 0.09 3.11 16 14 H 0.11 2.44 6.55 -2.39 -0.02 2.43 16 15 O -0.56 -14.36 12.72 -148.98 -1.90 -16.25 16 16 C 0.03 0.58 5.05 86.30 0.44 1.01 16 17 N -0.65 -9.91 2.14 -494.15 -1.06 -10.96 16 18 C 0.08 1.29 2.77 44.42 0.12 1.42 16 19 H 0.07 1.33 7.84 -2.39 -0.02 1.31 16 20 C -0.10 -1.47 5.30 30.21 0.16 -1.31 16 21 C -0.11 -1.35 5.19 29.79 0.15 -1.19 16 22 C -0.13 -1.32 5.72 30.02 0.17 -1.15 16 23 C 0.09 0.91 6.38 86.07 0.55 1.46 16 24 N -0.70 -10.24 5.28 -463.44 -2.45 -12.68 16 25 C 0.52 10.81 6.47 88.11 0.57 11.38 16 26 O -0.61 -18.35 17.92 -3.04 -0.05 -18.40 16 27 H 0.08 2.44 6.47 -2.38 -0.02 2.43 16 28 H 0.05 2.14 6.76 -2.39 -0.02 2.12 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.00 0.10 7.93 -2.38 -0.02 0.09 16 31 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 34 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 35 H 0.38 8.15 9.05 -74.05 -0.67 7.48 16 36 H 0.04 0.71 8.07 -2.39 -0.02 0.69 16 37 H 0.09 1.49 7.97 -2.39 -0.02 1.47 16 38 H 0.35 5.82 7.40 -89.69 -0.66 5.16 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 0.90 7.86 -2.38 -0.02 0.88 16 41 H 0.08 1.10 6.76 -2.39 -0.02 1.08 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.05 0.62 8.05 -2.38 -0.02 0.60 16 45 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.12 1.43 4.74 -2.39 -0.01 1.41 16 47 H 0.40 5.17 8.91 -92.71 -0.83 4.35 16 Total: -1.00 -70.80 363.86 -3.69 -74.49 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -1.17 Total: 19.09 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.91 Total: 0.98 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -7.50 Total: -106.11 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.95 Total: -34.66 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.80 -3.69 -74.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335350695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.780 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds