Wall clock time and date at job start Tue Mar 31 2020 03:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00133 * 2 1 4 4 C 1.50703 * 109.46607 * 66.04541 * 3 2 1 5 5 H 1.08005 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99800 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00093 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00169 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46934 * 89.99970 * 8 6 4 10 10 H 1.48496 * 109.47503 * 210.00185 * 8 6 4 11 11 H 1.48505 * 109.46831 * 330.00195 * 8 6 4 12 12 C 1.46904 * 110.99960 * 236.05175 * 2 1 3 13 13 C 1.53003 * 109.46917 * 293.94995 * 12 2 1 14 14 H 1.08998 * 109.46871 * 59.99952 * 13 12 2 15 15 O 1.42909 * 109.47181 * 300.00281 * 13 12 2 16 16 C 1.53002 * 109.46924 * 180.02562 * 13 12 2 17 17 N 1.46901 * 109.46604 * 184.99949 * 16 13 12 18 18 C 1.46908 * 110.99515 * 179.97438 * 17 16 13 19 19 H 1.08994 * 109.67418 * 325.49999 * 18 17 16 20 20 C 1.53343 * 109.67125 * 204.99832 * 18 17 16 21 21 C 1.52927 * 108.67352 * 172.73646 * 20 18 17 22 22 N 1.45757 * 110.48164 * 50.75510 * 21 20 18 23 23 C 1.46500 * 117.94329 * 160.92718 * 22 21 20 24 24 C 1.33350 * 124.11230 * 340.92439 * 22 21 20 25 25 O 1.21279 * 118.24909 * 182.19673 * 24 22 21 26 26 C 1.50172 * 123.50704 * 2.22549 * 24 22 21 27 27 H 1.09005 * 109.46858 * 183.95018 * 1 2 3 28 28 H 1.09000 * 109.47365 * 303.95071 * 1 2 3 29 29 H 1.09006 * 109.47015 * 63.95407 * 1 2 3 30 30 H 1.08996 * 109.47436 * 186.04615 * 3 2 1 31 31 H 1.08998 * 109.47035 * 306.05013 * 3 2 1 32 32 H 0.97006 * 120.00097 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46757 * 173.95479 * 12 2 1 34 34 H 1.08997 * 109.47288 * 53.95395 * 12 2 1 35 35 H 0.96698 * 113.99966 * 300.00017 * 15 13 12 36 36 H 1.08996 * 109.46893 * 65.00753 * 16 13 12 37 37 H 1.08995 * 109.47448 * 305.00032 * 16 13 12 38 38 H 1.00892 * 111.00150 * 56.05366 * 17 16 13 39 39 H 1.09003 * 109.60356 * 52.98773 * 20 18 17 40 40 H 1.09002 * 109.60683 * 292.49411 * 20 18 17 41 41 H 1.08995 * 109.30117 * 171.06893 * 21 20 18 42 42 H 1.09002 * 109.30123 * 290.44910 * 21 20 18 43 43 H 1.09001 * 109.47445 * 89.99657 * 23 22 21 44 44 H 1.08998 * 109.47496 * 209.99860 * 23 22 21 45 45 H 1.09004 * 109.47302 * 330.00185 * 23 22 21 46 46 H 1.08997 * 109.40675 * 222.28872 * 26 24 22 47 47 H 1.09002 * 109.33171 * 102.49836 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5111 2.0489 6 6 2.0267 3.3494 1.5286 7 7 2.7111 4.0022 0.6147 8 14 1.5829 4.1867 3.1384 9 1 2.6604 3.9505 4.1326 10 1 1.4299 5.6462 2.9115 11 1 0.3056 3.6288 3.6508 12 6 1.9955 -0.7659 -1.1377 13 6 1.6315 -2.2426 -0.9705 14 1 0.5473 -2.3474 -0.9324 15 8 2.2010 -2.7392 0.2425 16 6 2.1804 -3.0403 -2.1551 17 7 1.7299 -4.4351 -2.0567 18 6 2.2385 -5.2330 -3.1806 19 1 2.2808 -4.6168 -4.0786 20 6 1.3151 -6.4333 -3.4211 21 6 1.7580 -7.1431 -4.7011 22 7 3.1895 -7.4150 -4.6643 23 6 3.7175 -8.4383 -5.5700 24 6 4.0488 -6.7907 -3.8580 25 8 5.2253 -7.0724 -3.9443 26 6 3.6376 -5.7579 -2.8484 27 1 -0.3633 -1.0253 0.0708 28 1 -0.3634 0.5739 0.8524 29 1 -0.3633 0.4513 -0.9234 30 1 3.0797 1.3445 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 2.9856 4.9184 0.7767 33 1 3.0798 -0.6610 -1.1757 34 1 1.5611 -0.3871 -2.0628 35 1 3.1653 -2.6771 0.2786 36 1 3.2698 -3.0086 -2.1410 37 1 1.8161 -2.6057 -3.0859 38 1 0.7238 -4.4873 -2.0029 39 1 0.2872 -6.0876 -3.5317 40 1 1.3833 -7.1218 -2.5788 41 1 1.2151 -8.0833 -4.7981 42 1 1.5334 -6.5106 -5.5600 43 1 4.0031 -7.9752 -6.5146 44 1 4.5904 -8.9087 -5.1175 45 1 2.9518 -9.1924 -5.7521 46 1 4.3479 -4.9313 -2.8659 47 1 3.6294 -6.2072 -1.8553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335447584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:10 Heat of formation + Delta-G solvation = -76.543232 kcal Electronic energy + Delta-G solvation = -24537.833852 eV Core-core repulsion = 20948.572470 eV Total energy + Delta-G solvation = -3589.261382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -40.82905 -38.43046 -37.22330 -35.94385 -35.17830 -32.59175 -32.40409 -30.08961 -29.42745 -27.30600 -26.85503 -25.73734 -24.52863 -23.26747 -21.92580 -21.27747 -20.14664 -19.03648 -17.19634 -16.85193 -16.52453 -16.34573 -16.01441 -15.77166 -15.13489 -14.85635 -14.76412 -14.51726 -14.21924 -14.08943 -13.60982 -13.50747 -13.39158 -13.05646 -12.77059 -12.63752 -12.33313 -12.18648 -11.91421 -11.81037 -11.50378 -11.34313 -11.12178 -11.11099 -10.89469 -10.75505 -10.63475 -10.30266 -10.12477 -9.95876 -9.55828 -9.14701 -9.10357 -8.68081 -8.42917 -7.20182 -6.02253 -4.03217 2.35614 2.62787 3.33462 3.39099 3.42988 3.62419 4.17380 4.19464 4.35326 4.42409 4.56122 4.75783 4.82574 4.84078 4.90132 4.98008 5.04695 5.12709 5.15985 5.27284 5.32370 5.35253 5.37203 5.45285 5.53615 5.57003 5.63678 5.67202 5.74067 5.96726 6.04493 6.18484 6.28163 6.38803 6.70622 6.75851 7.05832 7.09043 7.27139 7.32320 7.80767 7.84012 8.04708 8.14605 8.20998 8.55614 9.04838 9.61003 11.08692 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.037982 B = 0.002258 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.005554 B =12395.060737 C =12670.133784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.023 3.977 13 C 0.118 3.882 14 H 0.091 0.909 15 O -0.536 6.536 16 C 0.025 3.975 17 N -0.672 5.672 18 C 0.084 3.916 19 H 0.051 0.949 20 C -0.138 4.138 21 C 0.117 3.883 22 N -0.611 5.611 23 C 0.077 3.923 24 C 0.518 3.482 25 O -0.554 6.554 26 C -0.122 4.122 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.007 0.993 30 H 0.028 0.972 31 H -0.011 1.011 32 H 0.261 0.739 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.369 0.631 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.345 0.655 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -23.343 -13.296 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.106 4.106 13 C 0.058 3.942 14 H 0.109 0.891 15 O -0.339 6.339 16 C -0.105 4.105 17 N -0.303 5.303 18 C -0.026 4.026 19 H 0.069 0.931 20 C -0.176 4.176 21 C -0.007 4.007 22 N -0.345 5.345 23 C -0.066 4.066 24 C 0.307 3.693 25 O -0.432 6.432 26 C -0.163 4.163 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.025 0.975 30 H 0.046 0.954 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.216 0.784 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.164 0.836 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.117 0.883 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.331 -23.804 -12.356 27.026 hybrid contribution -0.516 1.526 -1.021 1.907 sum -3.847 -22.279 -13.378 26.270 Atomic orbital electron populations 1.22248 0.89043 0.99538 1.00339 1.62017 1.06793 1.17398 1.39050 1.19747 0.95281 0.81610 0.96617 1.21169 1.34709 0.96814 1.01658 0.91768 1.25004 0.95359 0.97372 0.97035 1.69962 1.38559 1.11461 1.34042 0.86477 0.78903 0.78316 0.83592 1.20590 1.21391 1.19846 1.22733 1.00602 0.93946 0.93361 1.21842 0.98084 0.90760 0.83555 0.89082 1.86584 1.24988 1.84887 1.37447 1.22829 1.01382 0.87961 0.98333 1.60370 1.16495 1.10442 1.43029 1.21593 0.94092 0.94096 0.92840 0.93061 1.22100 0.99852 0.97754 0.97942 1.21398 0.80120 1.00837 0.98334 1.47280 1.08194 1.39574 1.39462 1.21705 1.00495 0.90874 0.93484 1.20282 0.85592 0.82278 0.81190 1.90723 1.17545 1.64988 1.69921 1.21691 0.97537 0.97878 0.99146 0.93492 0.90673 0.97464 0.95367 0.99361 0.92963 0.91144 0.95591 0.78438 0.90471 0.94451 0.83612 0.89531 0.89768 0.90252 0.91613 0.92664 0.90248 0.91282 0.88321 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.33 4.62 -244.36 -1.13 -12.46 16 3 C 0.19 5.03 4.72 -4.97 -0.02 5.00 16 4 C -0.50 -14.31 8.46 -34.44 -0.29 -14.60 16 5 H 0.06 1.81 7.12 -52.48 -0.37 1.44 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 C 0.02 0.39 4.62 -3.82 -0.02 0.38 16 13 C 0.12 1.59 3.02 -26.73 -0.08 1.51 16 14 H 0.09 1.24 6.55 -51.93 -0.34 0.90 16 15 O -0.54 -8.18 13.15 -35.23 -0.46 -8.65 16 16 C 0.02 0.26 5.13 -3.82 -0.02 0.24 16 17 N -0.67 -5.94 6.27 -106.49 -0.67 -6.61 16 18 C 0.08 0.63 2.56 -67.49 -0.17 0.46 16 19 H 0.05 0.40 7.79 -51.93 -0.40 0.00 16 20 C -0.14 -0.72 5.37 -26.59 -0.14 -0.87 16 21 C 0.12 0.57 6.39 -4.48 -0.03 0.55 16 22 N -0.61 -4.89 3.21 -182.85 -0.59 -5.47 16 23 C 0.08 0.52 10.22 59.85 0.61 1.13 16 24 C 0.52 5.62 7.47 -11.87 -0.09 5.53 16 25 O -0.55 -8.22 16.21 5.56 0.09 -8.13 16 26 C -0.12 -1.13 5.50 -28.10 -0.15 -1.29 16 27 H 0.05 0.79 6.47 -51.93 -0.34 0.45 16 28 H 0.07 1.60 6.76 -51.93 -0.35 1.24 16 29 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 31 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 34 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.37 4.80 9.04 45.56 0.41 5.21 16 36 H 0.08 0.80 7.78 -51.93 -0.40 0.40 16 37 H 0.04 0.37 8.06 -51.93 -0.42 -0.05 16 38 H 0.34 2.74 8.27 -39.30 -0.32 2.42 16 39 H 0.09 0.32 7.99 -51.93 -0.42 -0.09 16 40 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 41 H 0.08 0.25 7.92 -51.93 -0.41 -0.16 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.67 7.20 -51.93 -0.37 0.29 16 45 H 0.07 0.28 7.86 -51.93 -0.41 -0.13 16 46 H 0.10 0.98 7.85 -51.93 -0.41 0.57 16 47 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -34.26 373.45 -8.84 -43.10 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.47 Total: 1.19 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 0.04 Total: 0.74 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -1.65 Total: -50.68 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.37 Total: -16.78 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.26 -8.84 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335447584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.443 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds