Wall clock time and date at job start Tue Mar 31 2020 03:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00133 * 2 1 4 4 C 1.50703 * 109.46607 * 66.04541 * 3 2 1 5 5 H 1.08005 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99800 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00093 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00169 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46934 * 89.99970 * 8 6 4 10 10 H 1.48496 * 109.47503 * 210.00185 * 8 6 4 11 11 H 1.48505 * 109.46831 * 330.00195 * 8 6 4 12 12 C 1.46904 * 110.99960 * 236.05175 * 2 1 3 13 13 C 1.53003 * 109.46917 * 293.94995 * 12 2 1 14 14 H 1.08998 * 109.46871 * 59.99952 * 13 12 2 15 15 O 1.42909 * 109.47181 * 300.00281 * 13 12 2 16 16 C 1.53002 * 109.46924 * 180.02562 * 13 12 2 17 17 N 1.46901 * 109.46604 * 184.99949 * 16 13 12 18 18 C 1.46908 * 110.99515 * 179.97438 * 17 16 13 19 19 H 1.08994 * 109.67418 * 325.49999 * 18 17 16 20 20 C 1.53343 * 109.67125 * 204.99832 * 18 17 16 21 21 C 1.52927 * 108.67352 * 172.73646 * 20 18 17 22 22 N 1.45757 * 110.48164 * 50.75510 * 21 20 18 23 23 C 1.46500 * 117.94329 * 160.92718 * 22 21 20 24 24 C 1.33350 * 124.11230 * 340.92439 * 22 21 20 25 25 O 1.21279 * 118.24909 * 182.19673 * 24 22 21 26 26 C 1.50172 * 123.50704 * 2.22549 * 24 22 21 27 27 H 1.09005 * 109.46858 * 183.95018 * 1 2 3 28 28 H 1.09000 * 109.47365 * 303.95071 * 1 2 3 29 29 H 1.09006 * 109.47015 * 63.95407 * 1 2 3 30 30 H 1.08996 * 109.47436 * 186.04615 * 3 2 1 31 31 H 1.08998 * 109.47035 * 306.05013 * 3 2 1 32 32 H 0.97006 * 120.00097 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46757 * 173.95479 * 12 2 1 34 34 H 1.08997 * 109.47288 * 53.95395 * 12 2 1 35 35 H 0.96698 * 113.99966 * 300.00017 * 15 13 12 36 36 H 1.08996 * 109.46893 * 65.00753 * 16 13 12 37 37 H 1.08995 * 109.47448 * 305.00032 * 16 13 12 38 38 H 1.00892 * 111.00150 * 56.05366 * 17 16 13 39 39 H 1.09003 * 109.60356 * 52.98773 * 20 18 17 40 40 H 1.09002 * 109.60683 * 292.49411 * 20 18 17 41 41 H 1.08995 * 109.30117 * 171.06893 * 21 20 18 42 42 H 1.09002 * 109.30123 * 290.44910 * 21 20 18 43 43 H 1.09001 * 109.47445 * 89.99657 * 23 22 21 44 44 H 1.08998 * 109.47496 * 209.99860 * 23 22 21 45 45 H 1.09004 * 109.47302 * 330.00185 * 23 22 21 46 46 H 1.08997 * 109.40675 * 222.28872 * 26 24 22 47 47 H 1.09002 * 109.33171 * 102.49836 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5111 2.0489 6 6 2.0267 3.3494 1.5286 7 7 2.7111 4.0022 0.6147 8 14 1.5829 4.1867 3.1384 9 1 2.6604 3.9505 4.1326 10 1 1.4299 5.6462 2.9115 11 1 0.3056 3.6288 3.6508 12 6 1.9955 -0.7659 -1.1377 13 6 1.6315 -2.2426 -0.9705 14 1 0.5473 -2.3474 -0.9324 15 8 2.2010 -2.7392 0.2425 16 6 2.1804 -3.0403 -2.1551 17 7 1.7299 -4.4351 -2.0567 18 6 2.2385 -5.2330 -3.1806 19 1 2.2808 -4.6168 -4.0786 20 6 1.3151 -6.4333 -3.4211 21 6 1.7580 -7.1431 -4.7011 22 7 3.1895 -7.4150 -4.6643 23 6 3.7175 -8.4383 -5.5700 24 6 4.0488 -6.7907 -3.8580 25 8 5.2253 -7.0724 -3.9443 26 6 3.6376 -5.7579 -2.8484 27 1 -0.3633 -1.0253 0.0708 28 1 -0.3634 0.5739 0.8524 29 1 -0.3633 0.4513 -0.9234 30 1 3.0797 1.3445 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 2.9856 4.9184 0.7767 33 1 3.0798 -0.6610 -1.1757 34 1 1.5611 -0.3871 -2.0628 35 1 3.1653 -2.6771 0.2786 36 1 3.2698 -3.0086 -2.1410 37 1 1.8161 -2.6057 -3.0859 38 1 0.7238 -4.4873 -2.0029 39 1 0.2872 -6.0876 -3.5317 40 1 1.3833 -7.1218 -2.5788 41 1 1.2151 -8.0833 -4.7981 42 1 1.5334 -6.5106 -5.5600 43 1 4.0031 -7.9752 -6.5146 44 1 4.5904 -8.9087 -5.1175 45 1 2.9518 -9.1924 -5.7521 46 1 4.3479 -4.9313 -2.8659 47 1 3.6294 -6.2072 -1.8553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335447584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:04 Heat of formation + Delta-G solvation = -105.461939 kcal Electronic energy + Delta-G solvation = -24539.087861 eV Core-core repulsion = 20948.572470 eV Total energy + Delta-G solvation = -3590.515391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.54530 -39.58140 -38.18950 -37.10428 -36.23506 -34.60421 -33.25894 -30.83069 -30.59776 -29.02766 -27.87057 -26.91760 -25.57384 -24.42759 -22.63105 -22.62074 -21.68443 -19.66336 -18.56167 -17.92990 -17.54922 -17.13502 -17.05147 -16.96961 -16.66812 -15.93940 -15.88920 -15.55370 -15.40175 -15.22906 -14.73965 -14.62357 -14.28607 -14.09395 -13.84349 -13.60647 -13.37872 -13.20976 -13.13679 -12.83897 -12.78371 -12.60356 -12.52401 -12.45773 -12.36243 -12.01010 -11.96584 -11.74231 -11.58633 -11.38013 -11.00350 -10.61917 -10.56979 -9.77990 -9.38655 -8.94384 -8.20845 -6.30668 1.41122 1.42958 1.53889 1.54209 2.03168 2.40209 2.84273 3.11537 3.36774 3.61974 3.66438 3.77804 3.82824 3.96209 4.07316 4.20694 4.30110 4.37886 4.40102 4.43916 4.48817 4.55729 4.63364 4.66175 4.68434 4.73478 4.76216 4.81283 4.87909 4.93312 4.99481 5.08247 5.16763 5.19334 5.20368 5.32708 5.40591 5.64853 5.98030 6.06018 6.33478 6.38591 6.46349 6.65119 6.85779 7.05814 7.07692 7.39077 8.90039 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.037982 B = 0.002258 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.005554 B =12395.060737 C =12670.133784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.062 0.938 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.022 3.978 13 C 0.131 3.869 14 H 0.096 0.904 15 O -0.553 6.553 16 C 0.037 3.963 17 N -0.676 5.676 18 C 0.090 3.910 19 H 0.054 0.946 20 C -0.132 4.132 21 C 0.112 3.888 22 N -0.607 5.607 23 C 0.073 3.927 24 C 0.511 3.489 25 O -0.606 6.606 26 C -0.118 4.118 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.011 0.989 30 H 0.002 0.998 31 H -0.039 1.039 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.377 0.623 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.354 0.646 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -24.686 -13.549 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.188 1.188 12 C -0.107 4.107 13 C 0.071 3.929 14 H 0.114 0.886 15 O -0.359 6.359 16 C -0.093 4.093 17 N -0.308 5.308 18 C -0.020 4.020 19 H 0.072 0.928 20 C -0.170 4.170 21 C -0.010 4.010 22 N -0.338 5.338 23 C -0.069 4.069 24 C 0.300 3.700 25 O -0.489 6.489 26 C -0.159 4.159 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.020 0.980 31 H -0.022 1.022 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.225 0.775 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.174 0.826 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.545 -25.182 -12.631 28.713 hybrid contribution 0.143 1.881 -1.009 2.140 sum -5.403 -23.300 -13.640 27.534 Atomic orbital electron populations 1.22228 0.87745 1.01202 0.99575 1.61925 1.08066 1.14731 1.41664 1.19391 0.93562 0.84059 0.94886 1.21475 1.34764 0.97418 1.02386 0.92028 1.25933 0.95085 0.98097 1.00745 1.70084 1.39475 1.11904 1.36121 0.85371 0.78979 0.77215 0.78982 1.19925 1.20719 1.18832 1.22861 1.00168 0.95714 0.91982 1.21735 0.98324 0.88535 0.84336 0.88602 1.86546 1.25896 1.84851 1.38559 1.22590 1.01085 0.88568 0.97086 1.60252 1.17213 1.09425 1.43930 1.21548 0.93382 0.94852 0.92209 0.92834 1.22089 1.00459 0.96478 0.97968 1.21685 0.78128 1.02569 0.98643 1.47433 1.09366 1.38714 1.38328 1.21823 1.00885 0.91273 0.92932 1.20542 0.85239 0.82487 0.81683 1.90694 1.19738 1.66760 1.71660 1.21621 0.98620 0.97129 0.98510 0.90262 0.92834 0.97039 0.97978 1.02164 0.92705 0.91744 0.94968 0.77533 0.90801 0.93363 0.82578 0.87099 0.90169 0.87514 0.90176 0.92396 0.92525 0.87883 0.89604 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.14 127.69 1.17 2.72 16 2 N -0.54 -23.20 4.62 -927.00 -4.28 -27.49 16 3 C 0.21 11.16 4.72 85.56 0.40 11.56 16 4 C -0.52 -30.05 8.46 25.60 0.22 -29.84 16 5 H 0.06 3.51 7.12 -2.91 -0.02 3.48 16 6 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 7 N -0.94 -56.77 13.29 21.45 0.28 -56.48 16 8 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 C 0.02 0.73 4.62 86.30 0.40 1.13 16 13 C 0.13 3.30 3.02 30.60 0.09 3.39 16 14 H 0.10 2.35 6.55 -2.39 -0.02 2.33 16 15 O -0.55 -16.23 13.15 -148.98 -1.96 -18.19 16 16 C 0.04 0.69 5.13 86.30 0.44 1.13 16 17 N -0.68 -10.35 6.27 -490.84 -3.08 -13.43 16 18 C 0.09 1.16 2.56 45.05 0.12 1.27 16 19 H 0.05 0.70 7.79 -2.39 -0.02 0.68 16 20 C -0.13 -0.94 5.37 30.68 0.16 -0.78 16 21 C 0.11 0.71 6.39 86.49 0.55 1.26 16 22 N -0.61 -8.70 3.21 -851.61 -2.73 -11.43 16 23 C 0.07 0.88 10.22 127.77 1.31 2.19 16 24 C 0.51 11.06 7.47 87.71 0.65 11.71 16 25 O -0.61 -18.79 16.21 -3.03 -0.05 -18.84 16 26 C -0.12 -2.15 5.50 29.71 0.16 -1.99 16 27 H 0.08 2.50 6.47 -2.38 -0.02 2.48 16 28 H 0.05 2.26 6.76 -2.39 -0.02 2.24 16 29 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.00 0.12 7.93 -2.39 -0.02 0.10 16 31 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 32 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 33 H 0.06 2.19 7.93 -2.38 -0.02 2.17 16 34 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 35 H 0.38 9.60 9.04 -74.06 -0.67 8.93 16 36 H 0.07 1.46 7.78 -2.39 -0.02 1.44 16 37 H 0.05 0.82 8.06 -2.39 -0.02 0.80 16 38 H 0.35 4.47 8.27 -89.70 -0.74 3.72 16 39 H 0.11 0.33 7.99 -2.39 -0.02 0.31 16 40 H 0.08 0.69 8.12 -2.39 -0.02 0.68 16 41 H 0.11 0.19 7.92 -2.39 -0.02 0.17 16 42 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.96 7.20 -2.39 -0.02 0.94 16 45 H 0.10 0.52 7.86 -2.39 -0.02 0.50 16 46 H 0.09 1.75 7.85 -2.39 -0.02 1.73 16 47 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -76.16 373.45 -4.10 -80.26 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.45 Total: 14.57 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 6.14 Total: 4.19 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -9.81 Total: -108.83 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -2.01 Total: -37.03 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.16 -4.10 -80.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335447584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.204 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds