Wall clock time and date at job start Tue Mar 31 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47524 * 2 1 4 4 C 1.34776 * 120.00158 * 179.72114 * 3 2 1 5 5 O 1.21282 * 120.00039 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99986 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47140 * 180.02562 * 6 4 3 8 8 C 1.46962 * 110.99677 * 293.79968 * 7 6 4 9 9 C 1.53049 * 109.36083 * 176.81061 * 8 7 6 10 10 N 1.46961 * 109.36336 * 58.40424 * 9 8 7 11 11 C 1.46900 * 110.99966 * 176.81076 * 10 9 8 12 12 C 1.52993 * 109.47078 * 199.50115 * 11 10 9 13 13 O 1.42908 * 109.46959 * 64.64703 * 12 11 10 14 14 C 1.42894 * 113.99925 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47294 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99669 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00389 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00059 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00226 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46960 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46987 * 119.99992 * 19 17 15 22 22 H 1.48496 * 109.47449 * 240.00199 * 19 17 15 23 23 C 1.46961 * 110.87658 * 300.67330 * 10 9 8 24 24 C 1.46951 * 110.99974 * 170.00132 * 7 6 4 25 25 H 1.09006 * 109.46865 * 60.00089 * 1 2 3 26 26 H 1.08997 * 109.47539 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47231 * 300.00483 * 1 2 3 28 28 H 1.09003 * 109.47231 * 239.99517 * 2 1 3 29 29 H 1.09006 * 109.46865 * 119.99911 * 2 1 3 30 30 H 0.97003 * 119.99128 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47182 * 300.00371 * 6 4 3 32 32 H 1.09004 * 109.46614 * 59.99998 * 6 4 3 33 33 H 1.08993 * 109.48890 * 296.77753 * 8 7 6 34 34 H 1.09006 * 109.48988 * 56.84788 * 8 7 6 35 35 H 1.09002 * 109.49089 * 298.43548 * 9 8 7 36 36 H 1.08995 * 109.49025 * 178.36755 * 9 8 7 37 37 H 1.09000 * 109.46854 * 319.50798 * 11 10 9 38 38 H 1.09002 * 109.47036 * 79.50324 * 11 10 9 39 39 H 1.09000 * 109.47533 * 184.64318 * 12 11 10 40 40 H 1.08992 * 109.47541 * 304.64742 * 12 11 10 41 41 H 1.09009 * 109.47534 * 299.99864 * 14 13 12 42 42 H 1.09004 * 109.47271 * 59.99654 * 14 13 12 43 43 H 0.96994 * 120.00030 * 180.02562 * 18 17 15 44 44 H 1.08993 * 109.49146 * 299.35669 * 23 10 9 45 45 H 1.09006 * 109.48607 * 179.28711 * 23 10 9 46 46 H 1.09004 * 109.48699 * 303.15342 * 24 7 6 47 47 H 1.09002 * 109.48857 * 63.22050 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0057 5 8 4.1315 0.7056 0.0103 6 6 3.8459 3.0482 0.0051 7 7 5.3149 3.0482 0.0113 8 6 5.8361 2.4969 1.2700 9 6 7.3641 2.4405 1.2049 10 7 7.8919 3.7912 0.9664 11 6 9.3608 3.7912 0.9726 12 6 9.8699 5.2142 1.2102 13 8 9.4792 5.6483 2.5146 14 6 9.9076 6.9723 2.8391 15 6 9.4428 7.3243 4.2287 16 1 8.8772 6.6083 4.8065 17 6 9.7405 8.5599 4.7630 18 7 10.4298 9.4317 4.0596 19 14 9.1638 8.9965 6.4852 20 1 8.4128 7.8519 7.0607 21 1 10.3405 9.2959 7.3402 22 1 8.2802 10.1883 6.4242 23 6 7.3706 4.3424 -0.2923 24 6 5.8425 4.3988 -0.2272 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.3880 2.1185 -0.0004 31 1 3.4867 3.5603 -0.8876 32 1 3.4783 3.5639 0.8924 33 1 5.5307 3.1339 2.1000 34 1 5.4411 1.4918 1.4180 35 1 7.6695 1.7819 0.3918 36 1 7.7545 2.0590 2.1484 37 1 9.7207 3.1388 1.7683 38 1 9.7282 3.4295 0.0122 39 1 10.9570 5.2290 1.1330 40 1 9.4434 5.8824 0.4621 41 1 10.9956 7.0231 2.7957 42 1 9.4823 7.6772 2.1246 43 1 10.6395 10.3009 4.4356 44 1 7.6760 3.7054 -1.1223 45 1 7.7656 5.3476 -0.4402 46 1 5.4522 4.7803 -1.1708 47 1 5.5372 5.0574 0.5859 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347642664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:38 Heat of formation + Delta-G solvation = -97.369722 kcal Electronic energy + Delta-G solvation = -24551.027811 eV Core-core repulsion = 20960.863324 eV Total energy + Delta-G solvation = -3590.164486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08694 -39.90924 -38.44040 -36.54865 -36.00668 -34.85441 -32.18514 -31.88946 -31.14803 -29.37553 -28.13797 -25.63418 -24.59496 -24.41187 -23.50544 -22.51844 -21.52668 -20.76731 -18.61132 -18.04609 -17.69299 -17.37858 -16.97175 -16.79151 -16.49435 -16.08687 -15.92812 -15.77506 -15.65963 -15.31791 -14.97577 -14.87373 -14.60327 -14.13926 -13.74343 -13.57290 -13.31865 -13.05773 -12.98001 -12.87432 -12.70854 -12.68159 -12.58061 -12.44765 -12.29823 -12.21552 -12.07850 -11.74769 -11.59268 -11.21218 -10.84527 -10.75088 -10.15228 -10.07046 -9.39579 -9.15774 -8.30824 -6.42421 1.39548 1.41233 1.56160 1.65302 2.10255 2.35817 2.88898 2.98730 3.02478 3.26678 3.80131 3.88398 4.06254 4.12647 4.19005 4.20175 4.24727 4.28521 4.34363 4.41734 4.48803 4.51109 4.52733 4.56130 4.61861 4.66112 4.84378 4.85966 4.88270 4.96033 4.97842 5.01541 5.06142 5.06659 5.21457 5.26825 5.51073 5.56943 5.85538 5.93104 5.99444 6.15894 6.20780 6.59138 6.60633 6.89116 7.29827 7.30720 8.81771 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.002633 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.212181 B =10633.649843 C =11543.355771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 N -0.722 5.722 4 C 0.510 3.490 5 O -0.567 6.567 6 C 0.036 3.964 7 N -0.533 5.533 8 C 0.063 3.937 9 C 0.067 3.933 10 N -0.551 5.551 11 C 0.070 3.930 12 C 0.062 3.938 13 O -0.395 6.395 14 C 0.209 3.791 15 C -0.543 4.543 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.983 3.017 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.057 3.943 24 C 0.063 3.937 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.416 0.584 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.038 0.962 41 H -0.017 1.017 42 H -0.017 1.017 43 H 0.270 0.730 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.724 -15.494 -11.885 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.011 4.011 3 N -0.376 5.376 4 C 0.297 3.703 5 O -0.446 6.446 6 C -0.095 4.095 7 N -0.258 5.258 8 C -0.066 4.066 9 C -0.061 4.061 10 N -0.277 5.277 11 C -0.058 4.058 12 C -0.016 4.016 13 O -0.315 6.315 14 C 0.134 3.866 15 C -0.580 4.580 16 H 0.076 0.924 17 C -0.194 4.194 18 N -0.570 5.570 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.071 4.071 24 C -0.064 4.064 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.253 0.747 31 H 0.150 0.850 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.124 0.876 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -19.210 -16.116 -11.761 27.696 hybrid contribution 0.127 0.913 0.535 1.066 sum -19.083 -15.203 -11.227 26.858 Atomic orbital electron populations 1.21950 0.91907 1.04097 1.03332 1.21327 0.96137 0.82496 1.01189 1.45984 1.06518 1.09840 1.75262 1.20899 0.82570 0.91656 0.75196 1.90669 1.56306 1.47485 1.50136 1.22059 0.88686 0.93473 1.05265 1.61872 1.06568 1.22380 1.34971 1.22167 0.94518 1.00310 0.89562 1.22047 0.94586 0.88724 1.00708 1.62007 1.07830 1.22618 1.35197 1.22034 0.87337 0.95156 1.01268 1.22541 0.97481 0.95865 0.85665 1.87897 1.78506 1.32672 1.32427 1.19786 0.92375 0.79319 0.95115 1.21390 1.35710 1.00601 1.00342 0.92383 1.25967 0.94836 0.95374 1.03199 1.70078 1.39836 1.07630 1.39504 0.85139 0.78375 0.78338 0.77557 1.19019 1.19603 1.19516 1.22196 0.95020 0.99992 0.89848 1.22179 0.94142 0.88214 1.01909 0.90962 0.89994 0.91249 0.92690 0.93000 0.74711 0.84959 0.90381 0.95467 0.89544 0.94298 0.90673 0.90535 0.91164 0.93536 0.94340 0.99902 0.99949 0.92088 0.93633 0.90665 0.87599 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 10.03 71.98 0.72 -0.15 16 2 C 0.11 1.40 6.39 86.38 0.55 1.95 16 3 N -0.72 -9.16 5.56 -463.05 -2.57 -11.73 16 4 C 0.51 10.25 7.53 87.66 0.66 10.91 16 5 O -0.57 -16.70 14.34 -3.03 -0.04 -16.74 16 6 C 0.04 0.61 5.45 85.56 0.47 1.08 16 7 N -0.53 -12.85 4.45 -900.28 -4.00 -16.85 16 8 C 0.06 1.74 5.26 86.31 0.45 2.20 16 9 C 0.07 1.97 5.57 86.31 0.48 2.45 16 10 N -0.55 -17.76 4.58 -895.72 -4.11 -21.86 16 11 C 0.07 2.21 5.39 86.30 0.46 2.67 16 12 C 0.06 2.41 6.13 71.98 0.44 2.85 16 13 O -0.40 -20.29 10.27 -148.98 -1.53 -21.82 16 14 C 0.21 12.20 5.69 71.24 0.41 12.60 16 15 C -0.54 -33.39 9.43 25.60 0.24 -33.15 16 16 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 17 C 0.00 0.26 5.46 84.65 0.46 0.72 16 18 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 19 Si 0.98 45.35 29.54 68.60 2.03 47.37 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.06 1.57 5.43 86.31 0.47 2.04 16 24 C 0.06 1.49 5.61 86.31 0.48 1.98 16 25 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 26 H 0.08 0.36 8.14 -2.39 -0.02 0.35 16 27 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 30 H 0.42 2.49 8.47 -92.71 -0.79 1.70 16 31 H 0.13 1.46 8.03 -2.39 -0.02 1.44 16 32 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 2.53 5.85 -2.38 -0.01 2.52 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 2.20 8.00 -2.39 -0.02 2.18 16 37 H 0.08 2.44 7.85 -2.39 -0.02 2.42 16 38 H 0.07 1.83 8.00 -2.39 -0.02 1.81 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.46 6.74 -2.39 -0.02 1.44 16 41 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 42 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 2.14 6.72 -2.38 -0.02 2.12 16 46 H 0.11 1.87 8.07 -2.38 -0.02 1.85 16 47 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -77.57 376.36 -3.49 -81.06 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.15 Total: 9.07 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 6.30 Total: 8.14 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -10.40 Total: -107.08 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.57 Total: -38.56 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -77.57 -3.49 -81.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347642664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.306 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds