Wall clock time and date at job start Tue Mar 31 2020 03:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 120.00102 * 2 1 4 4 H 1.08001 * 119.99915 * 162.01142 * 3 2 1 5 5 C 1.38817 * 119.99930 * 341.73800 * 3 2 1 6 6 N 1.31618 * 119.99597 * 346.04174 * 5 3 2 7 7 Si 1.86795 * 119.99854 * 166.04246 * 5 3 2 8 8 H 1.48498 * 109.47014 * 60.00295 * 7 5 3 9 9 H 1.48500 * 109.46950 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47372 * 299.99778 * 7 5 3 11 11 C 1.46499 * 120.00143 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46964 * 270.00335 * 11 2 1 13 13 H 1.08999 * 109.47258 * 304.99412 * 12 11 2 14 14 O 1.42905 * 109.47522 * 65.00054 * 12 11 2 15 15 C 1.53007 * 109.46792 * 184.99606 * 12 11 2 16 16 N 1.46503 * 109.46770 * 179.97438 * 15 12 11 17 17 C 1.46495 * 120.00056 * 90.00696 * 16 15 12 18 18 C 1.34781 * 120.00187 * 269.99797 * 16 15 12 19 19 O 1.21286 * 119.99283 * 0.02562 * 18 16 15 20 20 C 1.50692 * 120.00304 * 180.02562 * 18 16 15 21 21 N 1.46898 * 109.47426 * 180.02562 * 20 18 16 22 22 C 1.48535 * 110.99981 * 52.60312 * 21 20 18 23 23 C 1.54932 * 103.23009 * 159.72291 * 22 21 20 24 24 C 1.54595 * 102.91895 * 322.58676 * 23 22 21 25 25 C 1.47901 * 111.00295 * 169.99680 * 21 20 18 26 26 H 1.08996 * 109.46941 * 84.92837 * 1 2 3 27 27 H 1.08996 * 109.46831 * 204.93151 * 1 2 3 28 28 H 1.08998 * 109.47001 * 324.93358 * 1 2 3 29 29 H 0.97000 * 119.99826 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.46637 * 29.99838 * 11 2 1 31 31 H 1.08998 * 109.47650 * 149.99833 * 11 2 1 32 32 H 0.96697 * 113.99797 * 59.99317 * 14 12 11 33 33 H 1.08999 * 109.47061 * 299.99927 * 15 12 11 34 34 H 1.09005 * 109.46970 * 60.00284 * 15 12 11 35 35 H 1.08998 * 109.47489 * 89.99576 * 17 16 15 36 36 H 1.09001 * 109.47124 * 209.99805 * 17 16 15 37 37 H 1.09005 * 109.47123 * 329.99374 * 17 16 15 38 38 H 1.09002 * 109.47257 * 300.00345 * 20 18 16 39 39 H 1.09001 * 109.47473 * 59.99899 * 20 18 16 40 40 H 1.09000 * 110.66639 * 278.15732 * 22 21 20 41 41 H 1.09004 * 110.66567 * 41.28430 * 22 21 20 42 42 H 1.09000 * 110.72753 * 204.23088 * 23 22 21 43 43 H 1.09003 * 110.72385 * 80.93666 * 23 22 21 44 44 H 1.09004 * 110.31089 * 263.03954 * 24 23 22 45 45 H 1.09004 * 110.39712 * 140.91689 * 24 23 22 46 46 H 1.09001 * 109.91844 * 333.51309 * 25 21 20 47 47 H 1.09004 * 109.91382 * 94.60136 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1902 1.2087 0.2889 5 6 1.5081 2.3578 -0.3767 6 7 0.3447 2.3032 -0.9897 7 14 2.2959 4.0121 -0.0137 8 1 3.6149 4.0916 -0.6912 9 1 1.4168 5.0994 -0.5138 10 1 2.4825 4.1606 1.4521 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 1 2.9642 -0.9122 1.9820 14 8 1.2060 -1.9927 2.0823 15 6 3.3238 -2.9675 1.4456 16 7 3.5684 -3.3894 2.8271 17 6 2.6483 -4.3227 3.4817 18 6 4.6400 -2.9191 3.4957 19 8 5.4015 -2.1462 2.9537 20 6 4.8919 -3.3536 4.9165 21 7 6.1113 -2.7057 5.4178 22 6 6.0501 -1.2342 5.2246 23 6 7.0944 -0.7001 6.2369 24 6 6.9168 -1.6447 7.4477 25 6 6.2625 -2.9152 6.8741 26 1 -0.3633 0.0908 -1.0236 27 1 -0.3633 -0.9319 0.4332 28 1 -0.3633 0.8411 0.5904 29 1 -0.1039 3.1221 -1.2527 30 1 1.6084 -2.0285 -0.5129 31 1 3.1500 -1.1387 -0.5133 32 1 0.6955 -2.6942 1.6554 33 1 2.8120 -3.7650 0.9069 34 1 4.2746 -2.7517 0.9582 35 1 2.9801 -5.3455 3.3032 36 1 2.6344 -4.1272 4.5540 37 1 1.6457 -4.1898 3.0752 38 1 4.0454 -3.0658 5.5400 39 1 5.0156 -4.4361 4.9490 40 1 6.3309 -0.9680 4.2056 41 1 5.0557 -0.8561 5.4620 42 1 6.8703 0.3298 6.5150 43 1 8.1024 -0.7803 5.8297 44 1 6.2655 -1.1870 8.1923 45 1 7.8847 -1.8836 7.8883 46 1 5.2846 -3.0679 7.3308 47 1 6.8984 -3.7807 7.0606 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486354930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:10 Heat of formation + Delta-G solvation = -40.248902 kcal Electronic energy + Delta-G solvation = -25666.529832 eV Core-core repulsion = 22078.842291 eV Total energy + Delta-G solvation = -3587.687541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.26634 -38.51936 -37.27071 -35.30118 -34.51371 -32.51774 -31.36393 -29.86994 -28.90944 -27.15173 -26.87787 -25.73973 -24.71384 -22.14269 -21.25033 -20.95846 -20.56934 -19.18983 -17.18484 -16.79192 -16.47215 -16.14743 -15.78993 -15.58520 -14.95591 -14.81808 -14.61702 -14.23240 -13.91921 -13.51832 -13.17859 -13.08796 -12.91550 -12.80714 -12.56849 -12.40092 -12.25444 -11.84936 -11.67624 -11.45196 -11.41498 -11.10439 -11.00569 -10.84116 -10.70828 -10.66612 -10.51310 -10.29789 -10.02694 -9.80868 -9.76009 -9.48378 -8.59346 -8.53403 -8.31853 -6.68120 -5.65125 -3.07127 2.68473 2.93187 3.44974 3.49230 3.52014 3.89977 4.39000 4.52893 4.55810 4.72861 4.79138 4.86498 4.97365 5.12681 5.15046 5.16600 5.19908 5.32453 5.39434 5.40101 5.50584 5.54376 5.62694 5.65812 5.74533 5.85590 5.89440 5.93379 5.96515 6.05884 6.06633 6.23949 6.54112 6.63709 6.75353 6.77411 6.80940 6.88676 7.41921 7.53616 7.77407 7.89793 8.16182 8.28058 8.44872 9.31186 9.94695 10.41132 11.39646 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.004005 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.063559 B = 6988.972182 C = 8438.750666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.595 5.595 3 C -0.252 4.252 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.911 5.911 7 Si 0.904 3.096 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.127 3.873 12 C 0.070 3.930 13 H 0.098 0.902 14 O -0.550 6.550 15 C 0.085 3.915 16 N -0.607 5.607 17 C 0.082 3.918 18 C 0.511 3.489 19 O -0.522 6.522 20 C 0.030 3.970 21 N -0.503 5.503 22 C 0.030 3.970 23 C -0.126 4.126 24 C -0.131 4.131 25 C 0.034 3.966 26 H 0.022 0.978 27 H -0.001 1.001 28 H 0.044 0.956 29 H 0.251 0.749 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.356 0.644 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.073 -15.966 14.160 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.317 5.317 3 C -0.382 4.382 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.209 1.209 9 H -0.217 1.217 10 H -0.212 1.212 11 C -0.002 4.002 12 C 0.007 3.993 13 H 0.116 0.884 14 O -0.354 6.354 15 C -0.039 4.039 16 N -0.341 5.341 17 C -0.062 4.062 18 C 0.298 3.702 19 O -0.397 6.397 20 C -0.101 4.101 21 N -0.228 5.228 22 C -0.097 4.097 23 C -0.164 4.164 24 C -0.169 4.169 25 C -0.093 4.093 26 H 0.041 0.959 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.201 0.799 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.980 -15.150 13.892 22.050 hybrid contribution -0.690 0.699 0.332 1.037 sum 7.290 -14.451 14.224 21.547 Atomic orbital electron populations 1.20749 0.82155 0.95729 0.98678 1.43765 1.02043 1.00182 1.85667 1.19197 0.95580 0.84953 1.38455 0.91395 1.24895 0.97551 0.98189 0.99154 1.70102 1.16842 1.26441 1.42277 0.86336 0.78373 0.83746 0.78151 1.20938 1.21651 1.21177 1.21276 0.96859 0.89415 0.92643 1.23320 0.83353 0.94694 0.97924 0.88426 1.86651 1.32922 1.59363 1.56445 1.22322 1.01990 0.97944 0.81625 1.47727 1.25430 1.46504 1.14440 1.21789 0.94357 0.91956 0.98051 1.20412 0.80532 0.81022 0.88209 1.90662 1.46006 1.34098 1.68948 1.22236 0.92925 1.01229 0.93706 1.64696 1.33720 1.10943 1.13413 1.23545 0.97580 0.86215 1.02351 1.22526 1.00249 0.98574 0.95067 1.22392 1.00997 0.95467 0.98061 1.22922 0.99797 0.98888 0.87741 0.95940 0.98265 0.93741 0.93834 0.94331 0.92665 0.79863 0.90703 0.89135 0.93005 0.91555 0.90333 0.91876 0.88069 0.86773 0.94297 0.91087 0.90734 0.91618 0.91072 0.93879 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.35 8.74 59.85 0.52 4.87 16 2 N -0.59 -15.32 2.89 -181.12 -0.52 -15.84 16 3 C -0.25 -7.23 9.70 -15.06 -0.15 -7.37 16 4 H 0.07 1.93 7.87 -52.49 -0.41 1.51 16 5 C 0.00 -0.01 5.10 -17.43 -0.09 -0.10 16 6 N -0.91 -27.37 10.49 55.49 0.58 -26.79 16 7 Si 0.90 22.83 29.58 -169.99 -5.03 17.80 16 8 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 C 0.13 2.56 5.30 -4.04 -0.02 2.54 16 12 C 0.07 1.24 3.48 -26.73 -0.09 1.14 16 13 H 0.10 2.15 8.14 -51.93 -0.42 1.72 16 14 O -0.55 -9.29 10.98 -35.23 -0.39 -9.68 16 15 C 0.08 1.17 5.10 -4.04 -0.02 1.15 16 16 N -0.61 -7.72 2.80 -181.57 -0.51 -8.23 16 17 C 0.08 0.71 9.98 59.84 0.60 1.31 16 18 C 0.51 7.40 7.38 -10.99 -0.08 7.31 16 19 O -0.52 -9.53 13.10 5.55 0.07 -9.45 16 20 C 0.03 0.34 4.07 -4.98 -0.02 0.32 16 21 N -0.50 -6.20 5.26 -231.90 -1.22 -7.42 16 22 C 0.03 0.41 5.30 -1.90 -0.01 0.40 16 23 C -0.13 -1.36 7.06 -24.87 -0.18 -1.53 16 24 C -0.13 -1.16 6.93 -25.38 -0.18 -1.34 16 25 C 0.03 0.32 6.69 -2.76 -0.02 0.31 16 26 H 0.02 0.61 7.46 -51.93 -0.39 0.22 16 27 H 0.00 -0.03 7.22 -51.93 -0.37 -0.40 16 28 H 0.04 1.24 7.03 -51.93 -0.37 0.88 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 32 H 0.36 4.60 8.79 45.56 0.40 5.00 16 33 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.09 1.39 7.42 -51.93 -0.39 1.00 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.51 6.44 -51.93 -0.33 0.17 16 37 H 0.08 0.66 6.88 -51.93 -0.36 0.31 16 38 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 39 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 40 H 0.11 1.88 5.97 -51.93 -0.31 1.57 16 41 H 0.04 0.55 8.02 -51.93 -0.42 0.14 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.37 7.57 -51.93 -0.39 -0.03 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -34.41 366.59 -8.69 -43.10 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.47 Total: 1.98 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 0.27 Total: 9.01 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -1.67 Total: -58.28 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.31 Total: -19.14 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.41 -8.69 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486354930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.849 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds