Wall clock time and date at job start Tue Mar 31 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47478 * 2 1 4 4 C 1.47008 * 111.00088 * 293.95292 * 3 2 1 5 5 C 1.53095 * 109.26000 * 182.39064 * 4 3 2 6 6 O 1.43010 * 109.25798 * 303.15470 * 5 4 3 7 7 C 1.43013 * 113.74169 * 58.67101 * 6 5 4 8 8 H 1.09002 * 109.51016 * 61.30228 * 7 6 5 9 9 C 1.50699 * 109.50934 * 181.39634 * 7 6 5 10 10 O 1.21288 * 119.99902 * 4.99419 * 9 7 6 11 11 N 1.34774 * 119.99877 * 185.00020 * 9 7 6 12 12 C 1.46505 * 119.99657 * 179.97438 * 11 9 7 13 13 H 1.09003 * 109.47251 * 324.99523 * 12 11 9 14 14 C 1.53003 * 109.47113 * 84.99950 * 12 11 9 15 15 C 1.53004 * 109.46646 * 204.99675 * 12 11 9 16 16 N 1.46497 * 109.47368 * 55.00143 * 15 12 11 17 17 C 1.46500 * 120.00081 * 89.99238 * 16 15 12 18 18 C 1.36929 * 119.99951 * 270.00045 * 16 15 12 19 19 H 1.08001 * 120.00330 * 141.74150 * 18 16 15 20 20 C 1.38815 * 120.00108 * 321.73323 * 18 16 15 21 21 N 1.31620 * 120.00048 * 157.43696 * 20 18 16 22 22 Si 1.86803 * 119.99949 * 337.43984 * 20 18 16 23 23 H 1.48504 * 109.47093 * 95.65735 * 22 20 18 24 24 H 1.48492 * 109.47076 * 215.66015 * 22 20 18 25 25 H 1.48504 * 109.47033 * 335.66438 * 22 20 18 26 26 C 1.47012 * 110.99818 * 57.59281 * 3 2 1 27 27 H 1.08994 * 109.47532 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46888 * 299.99921 * 1 2 3 29 29 H 1.08996 * 109.46933 * 59.99588 * 1 2 3 30 30 H 1.09005 * 109.46858 * 239.99338 * 2 1 3 31 31 H 1.09006 * 109.46852 * 120.00455 * 2 1 3 32 32 H 1.09000 * 109.50647 * 62.45495 * 4 3 2 33 33 H 1.09002 * 109.50817 * 302.32714 * 4 3 2 34 34 H 1.09001 * 109.50465 * 183.21628 * 5 4 3 35 35 H 1.09002 * 109.50584 * 63.09004 * 5 4 3 36 36 H 0.97000 * 120.00191 * 359.97438 * 11 9 7 37 37 H 1.09000 * 109.47129 * 299.99732 * 14 12 11 38 38 H 1.08996 * 109.47400 * 60.00090 * 14 12 11 39 39 H 1.08993 * 109.46731 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.47168 * 294.99820 * 15 12 11 41 41 H 1.09005 * 109.46780 * 175.00287 * 15 12 11 42 42 H 1.09000 * 109.47533 * 264.98246 * 17 16 15 43 43 H 1.09001 * 109.46801 * 144.97639 * 17 16 15 44 44 H 1.09003 * 109.46938 * 24.98863 * 17 16 15 45 45 H 0.96998 * 119.99785 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.51027 * 57.66822 * 26 3 2 47 47 H 1.09007 * 109.50561 * 297.53870 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0674 -1.2542 5 6 2.2494 3.4844 -1.2366 6 8 1.7597 4.1799 -0.0870 7 6 2.0829 3.5433 1.1521 8 1 3.1660 3.4935 1.2642 9 6 1.4948 4.3337 2.2925 10 8 0.7858 5.2910 2.0647 11 7 1.7569 3.9769 3.5655 12 6 1.1856 4.7457 4.6740 13 1 1.1392 5.7995 4.3995 14 6 -0.2247 4.2346 4.9757 15 6 2.0644 4.5803 5.9155 16 7 3.4425 4.9576 5.5921 17 6 3.8825 6.3441 5.7661 18 6 4.3194 4.0143 5.1270 19 1 5.0312 4.2719 4.3567 20 6 4.2935 2.7269 5.6456 21 7 4.7819 1.7253 4.9451 22 14 3.5656 2.4161 7.3376 23 1 2.1493 1.9920 7.1969 24 1 4.3372 1.3462 8.0195 25 1 3.6313 3.6630 8.1415 26 6 1.5019 2.1268 1.1587 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5855 2.1188 -1.3505 33 1 2.0851 1.5149 -2.0972 34 1 1.9445 4.0135 -2.1395 35 1 3.3374 3.4323 -1.1945 36 1 2.3237 3.2111 3.7476 37 1 -0.8508 4.3524 4.0913 38 1 -0.1783 3.1808 5.2503 39 1 -0.6498 4.8069 5.8001 40 1 2.0395 3.5407 6.2425 41 1 1.6900 5.2213 6.7137 42 1 3.7905 6.8761 4.8193 43 1 4.9230 6.3570 6.0907 44 1 3.2613 6.8306 6.5182 45 1 4.7635 0.8257 5.3073 46 1 1.7941 1.6177 2.0772 47 1 0.4146 2.1792 1.1011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498461150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:04 Heat of formation + Delta-G solvation = -46.628163 kcal Electronic energy + Delta-G solvation = -26721.840658 eV Core-core repulsion = 23133.876491 eV Total energy + Delta-G solvation = -3587.964167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.09288 -38.60913 -36.62374 -36.00767 -33.84524 -31.99711 -31.49993 -30.74720 -29.86423 -26.72309 -26.65860 -25.67524 -24.57988 -23.00522 -21.65094 -20.74985 -20.00202 -19.57026 -17.37920 -16.70711 -16.37353 -15.88801 -15.53787 -15.28898 -14.98728 -14.80912 -14.46510 -14.10108 -13.93993 -13.64867 -13.40095 -13.27684 -13.06817 -12.58413 -12.47322 -12.45791 -12.00945 -11.93819 -11.91247 -11.71686 -11.61983 -11.34171 -11.14398 -10.93052 -10.88499 -10.81904 -10.54831 -10.42104 -9.91543 -9.65204 -9.54407 -9.08866 -8.62970 -8.34148 -8.29989 -6.85940 -6.12282 -3.52925 3.16200 3.20055 3.38259 3.39539 3.44510 3.82841 4.39510 4.42192 4.85427 4.92343 4.93924 4.98223 5.12583 5.19429 5.23385 5.28113 5.30424 5.38018 5.48496 5.56834 5.66433 5.71045 5.80608 5.82803 5.86824 5.87657 5.89895 5.99420 6.02888 6.14650 6.18451 6.28090 6.31629 6.46941 6.62016 6.70983 6.78129 6.91895 6.96708 7.18670 7.31316 7.93807 8.27425 8.33540 8.86892 8.94505 9.58759 10.03537 11.01795 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.005418 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.640654 B = 5166.809652 C = 5769.298276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 N -0.530 5.530 4 C 0.013 3.987 5 C 0.062 3.938 6 O -0.359 6.359 7 C 0.079 3.921 8 H 0.098 0.902 9 C 0.522 3.478 10 O -0.546 6.546 11 N -0.687 5.687 12 C 0.125 3.875 13 H 0.078 0.922 14 C -0.163 4.163 15 C 0.127 3.873 16 N -0.610 5.610 17 C 0.124 3.876 18 C -0.264 4.264 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.893 5.893 22 Si 0.871 3.129 23 H -0.285 1.285 24 H -0.301 1.301 25 H -0.270 1.270 26 C 0.031 3.969 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.416 0.584 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.010 0.990 43 H 0.042 0.958 44 H 0.028 0.972 45 H 0.264 0.736 46 H 0.096 0.904 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 -2.190 -7.895 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.077 4.077 3 N -0.254 5.254 4 C -0.115 4.115 5 C -0.015 4.015 6 O -0.276 6.276 7 C 0.017 3.983 8 H 0.115 0.885 9 C 0.306 3.694 10 O -0.424 6.424 11 N -0.340 5.340 12 C 0.018 3.982 13 H 0.096 0.904 14 C -0.222 4.222 15 C 0.000 4.000 16 N -0.334 5.334 17 C -0.021 4.021 18 C -0.393 4.393 19 H 0.097 0.903 20 C -0.166 4.166 21 N -0.534 5.534 22 Si 0.701 3.299 23 H -0.213 1.213 24 H -0.228 1.228 25 H -0.195 1.195 26 C -0.097 4.097 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.577 -1.503 -8.014 11.131 hybrid contribution -0.803 -1.008 0.976 1.616 sum -8.381 -2.510 -7.038 11.228 Atomic orbital electron populations 1.22450 0.98307 1.02315 1.02212 1.22183 0.92810 0.89466 1.03263 1.62397 1.58817 1.02233 1.01916 1.22844 0.99387 0.96169 0.93082 1.22700 0.98864 0.91075 0.88911 1.88082 1.78117 1.48676 1.12763 1.21957 1.00827 0.90630 0.84845 0.88467 1.19879 0.80964 0.84693 0.83832 1.90637 1.38456 1.28562 1.84709 1.45852 1.50752 1.33492 1.03874 1.21666 0.91989 0.96205 0.88386 0.90371 1.22175 0.97337 1.01245 1.01443 1.21560 0.85211 0.99706 0.93496 1.44007 1.05765 1.05973 1.77655 1.21128 0.98252 0.85656 0.97107 1.18747 1.14683 0.89848 1.16028 0.90343 1.25523 0.97833 0.96086 0.97191 1.69872 1.47891 0.99334 1.36305 0.87029 0.77547 0.77587 0.87782 1.21333 1.22844 1.19458 1.22675 0.98105 0.93649 0.95298 0.92009 0.92172 0.92650 0.90567 0.89974 0.93742 0.89717 0.88351 0.92031 0.74522 0.92576 0.92773 0.92114 0.92448 0.92655 0.97159 0.93925 0.95343 0.92568 0.88561 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 9.20 37.16 0.34 -1.69 16 2 C 0.05 0.58 6.10 -3.83 -0.02 0.55 16 3 N -0.53 -7.25 4.94 -234.31 -1.16 -8.40 16 4 C 0.01 0.16 5.33 -3.72 -0.02 0.14 16 5 C 0.06 0.82 7.01 37.21 0.26 1.08 16 6 O -0.36 -6.40 10.01 -55.06 -0.55 -6.95 16 7 C 0.08 1.42 3.22 -27.83 -0.09 1.33 16 8 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 9 C 0.52 10.64 7.14 -10.99 -0.08 10.57 16 10 O -0.55 -12.64 16.17 -14.28 -0.23 -12.87 16 11 N -0.69 -13.74 4.45 -53.80 -0.24 -13.98 16 12 C 0.13 2.39 2.88 -67.92 -0.20 2.19 16 13 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 14 C -0.16 -2.65 9.48 37.16 0.35 -2.30 16 15 C 0.13 2.57 4.20 -4.04 -0.02 2.55 16 16 N -0.61 -13.72 2.36 -181.12 -0.43 -14.15 16 17 C 0.12 2.45 10.74 59.85 0.64 3.09 16 18 C -0.26 -6.74 8.36 -15.06 -0.13 -6.87 16 19 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 20 C 0.03 0.90 5.01 -17.43 -0.09 0.81 16 21 N -0.89 -24.32 13.97 55.49 0.78 -23.55 16 22 Si 0.87 20.55 25.09 -169.99 -4.26 16.28 16 23 H -0.29 -6.47 6.68 56.52 0.38 -6.09 16 24 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 26 C 0.03 0.49 4.37 -3.71 -0.02 0.47 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.70 6.42 -51.93 -0.33 0.37 16 29 H 0.05 0.57 6.61 -51.93 -0.34 0.22 16 30 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.54 6.59 -51.93 -0.34 0.20 16 33 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.42 8.86 7.05 -40.82 -0.29 8.57 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.24 3.39 -51.93 -0.18 1.07 16 41 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.04 0.83 8.08 -51.93 -0.42 0.42 16 44 H 0.03 0.49 7.84 -51.93 -0.41 0.08 16 45 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.10 1.55 8.02 -51.93 -0.42 1.14 16 47 H 0.05 0.76 6.41 -51.93 -0.33 0.42 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -29.84 362.63 -7.77 -37.61 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.09 Total: 8.62 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 0.94 Total: 11.93 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -1.05 Total: -60.09 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.78 Total: -19.82 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.26 Total: 16.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.84 -7.77 -37.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498461150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.019 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds