Wall clock time and date at job start Tue Mar 31 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47478 * 2 1 4 4 C 1.47008 * 111.00088 * 293.95292 * 3 2 1 5 5 C 1.53095 * 109.26000 * 182.39064 * 4 3 2 6 6 O 1.43010 * 109.25798 * 303.15470 * 5 4 3 7 7 C 1.43013 * 113.74169 * 58.67101 * 6 5 4 8 8 H 1.09002 * 109.51016 * 61.30228 * 7 6 5 9 9 C 1.50699 * 109.50934 * 181.39634 * 7 6 5 10 10 O 1.21288 * 119.99902 * 4.99419 * 9 7 6 11 11 N 1.34774 * 119.99877 * 185.00020 * 9 7 6 12 12 C 1.46505 * 119.99657 * 179.97438 * 11 9 7 13 13 H 1.09003 * 109.47251 * 324.99523 * 12 11 9 14 14 C 1.53003 * 109.47113 * 84.99950 * 12 11 9 15 15 C 1.53004 * 109.46646 * 204.99675 * 12 11 9 16 16 N 1.46497 * 109.47368 * 55.00143 * 15 12 11 17 17 C 1.46500 * 120.00081 * 89.99238 * 16 15 12 18 18 C 1.36929 * 119.99951 * 270.00045 * 16 15 12 19 19 H 1.08001 * 120.00330 * 141.74150 * 18 16 15 20 20 C 1.38815 * 120.00108 * 321.73323 * 18 16 15 21 21 N 1.31620 * 120.00048 * 157.43696 * 20 18 16 22 22 Si 1.86803 * 119.99949 * 337.43984 * 20 18 16 23 23 H 1.48504 * 109.47093 * 95.65735 * 22 20 18 24 24 H 1.48492 * 109.47076 * 215.66015 * 22 20 18 25 25 H 1.48504 * 109.47033 * 335.66438 * 22 20 18 26 26 C 1.47012 * 110.99818 * 57.59281 * 3 2 1 27 27 H 1.08994 * 109.47532 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46888 * 299.99921 * 1 2 3 29 29 H 1.08996 * 109.46933 * 59.99588 * 1 2 3 30 30 H 1.09005 * 109.46858 * 239.99338 * 2 1 3 31 31 H 1.09006 * 109.46852 * 120.00455 * 2 1 3 32 32 H 1.09000 * 109.50647 * 62.45495 * 4 3 2 33 33 H 1.09002 * 109.50817 * 302.32714 * 4 3 2 34 34 H 1.09001 * 109.50465 * 183.21628 * 5 4 3 35 35 H 1.09002 * 109.50584 * 63.09004 * 5 4 3 36 36 H 0.97000 * 120.00191 * 359.97438 * 11 9 7 37 37 H 1.09000 * 109.47129 * 299.99732 * 14 12 11 38 38 H 1.08996 * 109.47400 * 60.00090 * 14 12 11 39 39 H 1.08993 * 109.46731 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.47168 * 294.99820 * 15 12 11 41 41 H 1.09005 * 109.46780 * 175.00287 * 15 12 11 42 42 H 1.09000 * 109.47533 * 264.98246 * 17 16 15 43 43 H 1.09001 * 109.46801 * 144.97639 * 17 16 15 44 44 H 1.09003 * 109.46938 * 24.98863 * 17 16 15 45 45 H 0.96998 * 119.99785 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.51027 * 57.66822 * 26 3 2 47 47 H 1.09007 * 109.50561 * 297.53870 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0674 -1.2542 5 6 2.2494 3.4844 -1.2366 6 8 1.7597 4.1799 -0.0870 7 6 2.0829 3.5433 1.1521 8 1 3.1660 3.4935 1.2642 9 6 1.4948 4.3337 2.2925 10 8 0.7858 5.2910 2.0647 11 7 1.7569 3.9769 3.5655 12 6 1.1856 4.7457 4.6740 13 1 1.1392 5.7995 4.3995 14 6 -0.2247 4.2346 4.9757 15 6 2.0644 4.5803 5.9155 16 7 3.4425 4.9576 5.5921 17 6 3.8825 6.3441 5.7661 18 6 4.3194 4.0143 5.1270 19 1 5.0312 4.2719 4.3567 20 6 4.2935 2.7269 5.6456 21 7 4.7819 1.7253 4.9451 22 14 3.5656 2.4161 7.3376 23 1 2.1493 1.9920 7.1969 24 1 4.3372 1.3462 8.0195 25 1 3.6313 3.6630 8.1415 26 6 1.5019 2.1268 1.1587 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5855 2.1188 -1.3505 33 1 2.0851 1.5149 -2.0972 34 1 1.9445 4.0135 -2.1395 35 1 3.3374 3.4323 -1.1945 36 1 2.3237 3.2111 3.7476 37 1 -0.8508 4.3524 4.0913 38 1 -0.1783 3.1808 5.2503 39 1 -0.6498 4.8069 5.8001 40 1 2.0395 3.5407 6.2425 41 1 1.6900 5.2213 6.7137 42 1 3.7905 6.8761 4.8193 43 1 4.9230 6.3570 6.0907 44 1 3.2613 6.8306 6.5182 45 1 4.7635 0.8257 5.3073 46 1 1.7941 1.6177 2.0772 47 1 0.4146 2.1792 1.1011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498461150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:03 Heat of formation + Delta-G solvation = -67.804169 kcal Electronic energy + Delta-G solvation = -26722.758918 eV Core-core repulsion = 23133.876491 eV Total energy + Delta-G solvation = -3588.882428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46566 -40.03751 -38.24095 -37.25907 -35.54303 -33.76778 -33.05784 -31.75602 -31.23481 -28.31573 -27.81756 -27.43713 -25.83160 -24.06419 -23.29264 -22.35406 -21.31723 -20.95816 -19.06401 -18.28894 -17.89473 -17.26024 -17.08602 -16.48949 -16.40245 -16.03189 -15.84882 -15.72600 -15.12653 -15.03347 -14.96353 -14.83066 -14.66642 -14.12676 -13.85318 -13.61923 -13.49833 -13.40112 -13.12621 -12.88753 -12.82624 -12.79992 -12.67205 -12.46167 -12.39397 -12.13517 -11.90762 -11.78001 -11.60041 -11.47367 -10.83844 -10.68065 -10.58421 -9.93112 -9.39317 -8.70856 -8.14041 -5.53208 1.33483 1.48556 1.56358 1.57513 1.95929 2.44876 2.72675 3.05951 3.10069 3.45221 3.66385 3.78084 3.88596 3.94603 4.01171 4.10708 4.21374 4.28493 4.31003 4.38382 4.43385 4.47383 4.55680 4.57706 4.62402 4.73529 4.75437 4.75562 4.84297 4.86759 4.95648 4.98823 5.02511 5.05905 5.13310 5.25782 5.29482 5.64460 5.83067 5.97376 5.99379 6.02665 6.22719 6.66584 7.00634 7.28415 7.64579 8.09962 9.03154 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.005418 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.640654 B = 5166.809652 C = 5769.298276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.049 3.951 3 N -0.543 5.543 4 C 0.017 3.983 5 C 0.053 3.947 6 O -0.384 6.384 7 C 0.085 3.915 8 H 0.080 0.920 9 C 0.519 3.481 10 O -0.577 6.577 11 N -0.687 5.687 12 C 0.123 3.877 13 H 0.066 0.934 14 C -0.154 4.154 15 C 0.125 3.875 16 N -0.622 5.622 17 C 0.123 3.877 18 C -0.254 4.254 19 H 0.037 0.963 20 C -0.002 4.002 21 N -0.929 5.929 22 Si 0.925 3.075 23 H -0.267 1.267 24 H -0.313 1.313 25 H -0.265 1.265 26 C 0.045 3.955 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.060 0.940 36 H 0.410 0.590 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.005 0.995 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.264 0.736 46 H 0.084 0.916 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 -2.595 -7.648 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.078 4.078 3 N -0.268 5.268 4 C -0.111 4.111 5 C -0.024 4.024 6 O -0.302 6.302 7 C 0.024 3.976 8 H 0.098 0.902 9 C 0.305 3.695 10 O -0.457 6.457 11 N -0.338 5.338 12 C 0.016 3.984 13 H 0.084 0.916 14 C -0.212 4.212 15 C -0.001 4.001 16 N -0.347 5.347 17 C -0.022 4.022 18 C -0.384 4.384 19 H 0.054 0.946 20 C -0.201 4.201 21 N -0.571 5.571 22 Si 0.755 3.245 23 H -0.194 1.194 24 H -0.242 1.242 25 H -0.189 1.189 26 C -0.084 4.084 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.107 -1.894 -7.759 12.113 hybrid contribution -0.270 -0.825 0.800 1.181 sum -9.377 -2.719 -6.960 11.990 Atomic orbital electron populations 1.22384 0.97443 1.03263 1.01557 1.22264 0.93522 0.88036 1.03958 1.62401 1.59273 1.03236 1.01853 1.22894 0.99616 0.95471 0.93083 1.23040 0.98967 0.92184 0.88165 1.88044 1.78579 1.50056 1.13535 1.21781 0.99530 0.91698 0.84629 0.90216 1.20286 0.80465 0.84361 0.84427 1.90603 1.40040 1.29897 1.85161 1.45939 1.50358 1.33144 1.04327 1.21715 0.93494 0.95584 0.87591 0.91595 1.22091 0.95125 1.01842 1.02186 1.21678 0.84051 0.99678 0.94646 1.44134 1.06481 1.06366 1.77671 1.21179 0.98783 0.84383 0.97805 1.18425 1.14422 0.90658 1.14864 0.94567 1.25898 0.98808 0.95717 0.99639 1.69975 1.49932 0.99653 1.37554 0.86139 0.77683 0.77090 0.83629 1.19390 1.24158 1.18925 1.22433 0.97727 0.92226 0.96009 0.90265 0.93834 0.92215 0.88371 0.90816 0.93518 0.86749 0.85591 0.92171 0.75292 0.93321 0.92345 0.89222 0.93508 0.89559 0.97704 0.94268 0.92098 0.92664 0.89742 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.61 9.20 71.98 0.66 -2.94 16 2 C 0.05 1.05 6.10 86.30 0.53 1.57 16 3 N -0.54 -14.44 4.94 -895.22 -4.42 -18.86 16 4 C 0.02 0.38 5.33 86.31 0.46 0.84 16 5 C 0.05 1.34 7.01 72.01 0.50 1.85 16 6 O -0.38 -13.83 10.01 -130.02 -1.30 -15.13 16 7 C 0.09 3.17 3.22 29.88 0.10 3.26 16 8 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 9 C 0.52 21.74 7.14 87.66 0.63 22.36 16 10 O -0.58 -27.22 16.17 15.90 0.26 -26.97 16 11 N -0.69 -27.90 4.45 -442.50 -1.97 -29.87 16 12 C 0.12 4.58 2.88 44.99 0.13 4.71 16 13 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 14 C -0.15 -4.68 9.48 71.98 0.68 -4.00 16 15 C 0.13 4.81 4.20 86.38 0.36 5.17 16 16 N -0.62 -27.52 2.36 -726.92 -1.71 -29.23 16 17 C 0.12 4.72 10.74 127.77 1.37 6.09 16 18 C -0.25 -13.17 8.36 84.04 0.70 -12.46 16 19 H 0.04 2.16 8.06 -2.91 -0.02 2.14 16 20 C 0.00 -0.12 5.01 84.86 0.43 0.30 16 21 N -0.93 -51.58 13.97 21.65 0.30 -51.28 16 22 Si 0.93 41.72 25.09 68.60 1.72 43.44 16 23 H -0.27 -11.18 6.68 99.48 0.66 -10.52 16 24 H -0.31 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.04 1.42 4.37 86.32 0.38 1.80 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 0.98 6.42 -2.39 -0.02 0.96 16 29 H 0.06 1.09 6.61 -2.39 -0.02 1.08 16 30 H 0.10 1.67 8.11 -2.38 -0.02 1.65 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.67 16 32 H 0.05 1.03 6.59 -2.39 -0.02 1.02 16 33 H 0.11 1.87 8.12 -2.39 -0.02 1.85 16 34 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.41 17.91 7.05 -92.71 -0.65 17.25 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 1.92 3.39 -2.39 -0.01 1.91 16 41 H 0.09 2.79 7.86 -2.38 -0.02 2.77 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 44 H 0.06 1.94 7.84 -2.39 -0.02 1.92 16 45 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.08 2.83 8.02 -2.39 -0.02 2.81 16 47 H 0.05 1.49 6.41 -2.38 -0.02 1.48 16 Total: -1.00 -65.03 362.63 0.06 -64.97 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.25 Total: 34.39 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 6.93 Total: 28.55 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -7.80 Total: -129.24 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.04 Total: -42.10 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.72 Total: 43.44 kcal Total: -65.03 0.06 -64.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498461150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.834 kcal (2) G-P(sol) polarization free energy of solvation -65.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds