Wall clock time and date at job start Tue Mar 31 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46652 * 2 1 4 4 C 1.47010 * 111.00099 * 293.63560 * 3 2 1 5 5 C 1.53097 * 109.26021 * 177.61123 * 4 3 2 6 6 O 1.43018 * 109.29237 * 56.81873 * 5 4 3 7 7 C 1.43014 * 113.74086 * 301.40224 * 6 5 4 8 8 H 1.08996 * 109.50760 * 298.64362 * 7 6 5 9 9 C 1.50698 * 109.50574 * 178.55794 * 7 6 5 10 10 O 1.21279 * 120.00227 * 355.08848 * 9 7 6 11 11 N 1.34777 * 119.99799 * 175.08988 * 9 7 6 12 12 C 1.46506 * 119.99688 * 180.02562 * 11 9 7 13 13 H 1.08990 * 109.47427 * 35.00063 * 12 11 9 14 14 C 1.53002 * 109.47102 * 274.99602 * 12 11 9 15 15 C 1.53000 * 109.46901 * 155.00173 * 12 11 9 16 16 C 1.52997 * 109.47060 * 294.99627 * 15 12 11 17 17 N 1.46500 * 109.47473 * 180.02562 * 16 15 12 18 18 C 1.36939 * 120.00037 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00126 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99966 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46920 * 90.00220 * 22 20 18 24 24 H 1.48494 * 109.47145 * 210.00039 * 22 20 18 25 25 H 1.48493 * 109.47253 * 330.00674 * 22 20 18 26 26 C 1.47011 * 110.99955 * 169.99762 * 3 2 1 27 27 H 1.08999 * 109.47539 * 300.00013 * 1 2 3 28 28 H 1.08998 * 109.46972 * 60.00317 * 1 2 3 29 29 H 1.09010 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47080 * 240.00229 * 2 1 3 31 31 H 1.08998 * 109.46972 * 119.99683 * 2 1 3 32 32 H 1.09002 * 109.50413 * 297.54113 * 4 3 2 33 33 H 1.08995 * 109.50577 * 57.62837 * 4 3 2 34 34 H 1.08996 * 109.50767 * 176.78165 * 5 4 3 35 35 H 1.09004 * 109.49932 * 296.86743 * 5 4 3 36 36 H 0.96993 * 120.00319 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.47312 * 300.00532 * 14 12 11 38 38 H 1.09004 * 109.46964 * 60.00330 * 14 12 11 39 39 H 1.08994 * 109.47359 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.47398 * 54.99796 * 15 12 11 41 41 H 1.09001 * 109.47194 * 174.99977 * 15 12 11 42 42 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 43 43 H 1.08998 * 109.47533 * 59.99948 * 16 15 12 44 44 H 0.97004 * 119.99396 * 0.02562 * 17 16 15 45 45 H 0.97001 * 119.99359 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.50349 * 62.45405 * 26 3 2 47 47 H 1.09004 * 109.54128 * 302.35294 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6764 2.0652 -1.2573 5 6 2.1513 3.5191 -1.1910 6 8 3.5567 3.5455 -0.9271 7 6 3.9265 2.8916 0.2898 8 1 3.4493 3.3929 1.1319 9 6 5.4234 2.9450 0.4551 10 8 6.1147 3.4092 -0.4267 11 7 5.9940 2.4767 1.5827 12 6 7.4493 2.5291 1.7435 13 1 7.8351 3.4311 1.2688 14 6 8.0794 1.2984 1.0883 15 6 7.7973 2.5481 3.2333 16 6 7.2738 3.8406 3.8629 17 7 7.6075 3.8592 5.2892 18 6 7.2380 4.9254 6.0650 19 1 6.7002 5.7523 5.6255 20 6 7.5539 4.9427 7.4167 21 7 8.2089 3.9345 7.9524 22 14 7.0504 6.3974 8.4748 23 1 5.7026 6.1502 9.0472 24 1 8.0314 6.5715 9.5760 25 1 7.0169 7.6267 7.6427 26 6 3.4695 1.4314 0.2384 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1662 1.5600 -2.0898 33 1 0.5963 2.0406 -1.4013 34 1 1.9502 4.0115 -2.1424 35 1 1.6213 4.0390 -0.3929 36 1 5.4412 2.1050 2.2878 37 1 7.6936 0.3963 1.5632 38 1 7.8314 1.2848 0.0270 39 1 9.1620 1.3371 1.2084 40 1 7.3362 1.6916 3.7252 41 1 8.8794 2.4975 3.3543 42 1 7.7349 4.6971 3.3710 43 1 6.1917 3.8914 3.7419 44 1 8.0910 3.1165 5.6838 45 1 8.4299 3.9469 8.8968 46 1 3.9879 0.9160 -0.5701 47 1 3.6989 0.9445 1.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668320658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:40 Heat of formation + Delta-G solvation = -70.285689 kcal Electronic energy + Delta-G solvation = -24956.151142 eV Core-core repulsion = 21367.161108 eV Total energy + Delta-G solvation = -3588.990034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56176 -39.08265 -36.71378 -36.17002 -34.34724 -32.64387 -31.47748 -31.22911 -30.38994 -27.87823 -27.21841 -24.76067 -24.02710 -23.03466 -21.70647 -20.99075 -20.70804 -20.33111 -17.67554 -17.09018 -16.86210 -16.36226 -15.89841 -15.67190 -15.54051 -14.87691 -14.72640 -14.42012 -14.17231 -13.96639 -13.78891 -13.43030 -13.33955 -13.14036 -12.82555 -12.52174 -12.40413 -12.25703 -12.07942 -11.87910 -11.78255 -11.26418 -11.21765 -11.05744 -10.99914 -10.79098 -10.64154 -10.55949 -10.04159 -9.98397 -9.70520 -9.65551 -9.02749 -8.85608 -8.83175 -6.92296 -5.76663 -3.05306 2.55944 2.77045 3.34009 3.44098 3.49439 3.51307 3.85308 4.41187 4.50316 4.55457 4.57613 4.69732 4.74248 4.86384 4.92931 4.97795 5.05639 5.10364 5.18491 5.23771 5.29827 5.35338 5.38932 5.50511 5.52582 5.55426 5.59709 5.71671 5.75261 5.81583 5.93008 6.02757 6.22948 6.27772 6.33777 6.48324 6.51362 6.53447 6.78508 6.81925 6.87907 7.52652 7.70843 8.23466 8.42517 9.53614 10.11203 10.45896 11.46303 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.003028 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.400211 B = 9244.401386 C = 9923.444123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.013 3.987 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.077 3.923 8 H 0.095 0.905 9 C 0.522 3.478 10 O -0.521 6.521 11 N -0.715 5.715 12 C 0.146 3.854 13 H 0.090 0.910 14 C -0.161 4.161 15 C -0.134 4.134 16 C 0.153 3.847 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.031 3.969 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.402 0.598 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.049 0.951 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 -10.017 -18.901 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.115 4.115 5 C -0.015 4.015 6 O -0.273 6.273 7 C 0.015 3.985 8 H 0.113 0.887 9 C 0.306 3.694 10 O -0.396 6.396 11 N -0.369 5.369 12 C 0.042 3.958 13 H 0.108 0.892 14 C -0.219 4.219 15 C -0.173 4.173 16 C 0.026 3.974 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.098 4.098 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.237 0.763 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.293 -9.170 -19.241 25.120 hybrid contribution -0.239 -0.238 0.689 0.767 sum -13.531 -9.408 -18.552 24.815 Atomic orbital electron populations 1.21801 0.94477 1.01785 1.02611 1.22118 0.96399 0.88078 1.01186 1.62242 1.12876 1.16661 1.34309 1.22888 1.02004 0.95905 0.90721 1.22749 0.81564 0.94978 1.02235 1.88127 1.23205 1.76577 1.39391 1.21958 0.93178 0.93356 0.90000 0.88702 1.19967 0.88825 0.78096 0.82487 1.90715 1.63925 1.44078 1.40862 1.46036 1.08580 1.63222 1.19032 1.21001 0.78820 0.99423 0.96558 0.89242 1.22163 1.01115 0.97764 1.00874 1.22065 1.02489 1.00080 0.92626 1.20639 0.96814 0.93779 0.86180 1.42368 1.68797 1.23447 1.03214 1.19238 1.29652 0.97634 0.90498 0.91223 1.24743 1.01194 0.98170 0.96935 1.69661 1.45160 1.31319 1.12187 0.86183 0.77685 0.82069 0.80244 1.21706 1.21756 1.20734 1.22651 0.88408 0.95980 1.02735 0.91556 0.92701 0.92085 0.94687 0.90290 0.93770 0.89103 0.87889 0.91864 0.76337 0.92512 0.92460 0.91425 0.91318 0.90152 0.96381 0.96356 0.78328 0.93528 0.93290 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.85 37.16 0.37 -0.52 16 2 C 0.05 0.35 5.68 -3.82 -0.02 0.33 16 3 N -0.54 -4.64 4.73 -234.31 -1.11 -5.74 16 4 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 5 C 0.06 0.56 7.01 37.21 0.26 0.82 16 6 O -0.36 -4.67 10.01 -55.06 -0.55 -5.23 16 7 C 0.08 0.90 3.22 -27.84 -0.09 0.81 16 8 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 9 C 0.52 7.37 7.15 -10.99 -0.08 7.30 16 10 O -0.52 -9.48 16.17 -14.27 -0.23 -9.71 16 11 N -0.72 -8.87 4.49 -53.80 -0.24 -9.11 16 12 C 0.15 1.97 2.57 -67.93 -0.17 1.79 16 13 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 14 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 15 C -0.13 -2.03 4.87 -26.73 -0.13 -2.16 16 16 C 0.15 3.05 6.15 -4.04 -0.02 3.03 16 17 N -0.73 -18.59 5.60 -59.91 -0.34 -18.93 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.03 0.29 4.88 -3.72 -0.02 0.27 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.30 6.51 -51.93 -0.34 -0.03 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.03 0.25 8.12 -51.93 -0.42 -0.18 16 31 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.57 6.38 -51.93 -0.33 0.24 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.40 4.22 8.47 -40.82 -0.35 3.87 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.37 7.75 -51.93 -0.40 -0.04 16 44 H 0.38 10.10 7.67 -40.82 -0.31 9.78 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.75 7.96 -51.93 -0.41 0.33 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -34.18 377.18 -9.33 -43.51 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.42 Total: 6.74 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 0.17 Total: 2.83 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.96 Total: -61.34 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.78 Total: -14.94 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.18 -9.33 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668320658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.776 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds