Wall clock time and date at job start Tue Mar 31 2020 03:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46652 * 2 1 4 4 C 1.47010 * 111.00099 * 293.63560 * 3 2 1 5 5 C 1.53097 * 109.26021 * 177.61123 * 4 3 2 6 6 O 1.43018 * 109.29237 * 56.81873 * 5 4 3 7 7 C 1.43014 * 113.74086 * 301.40224 * 6 5 4 8 8 H 1.08996 * 109.50760 * 298.64362 * 7 6 5 9 9 C 1.50698 * 109.50574 * 178.55794 * 7 6 5 10 10 O 1.21279 * 120.00227 * 355.08848 * 9 7 6 11 11 N 1.34777 * 119.99799 * 175.08988 * 9 7 6 12 12 C 1.46506 * 119.99688 * 180.02562 * 11 9 7 13 13 H 1.08990 * 109.47427 * 35.00063 * 12 11 9 14 14 C 1.53002 * 109.47102 * 274.99602 * 12 11 9 15 15 C 1.53000 * 109.46901 * 155.00173 * 12 11 9 16 16 C 1.52997 * 109.47060 * 294.99627 * 15 12 11 17 17 N 1.46500 * 109.47473 * 180.02562 * 16 15 12 18 18 C 1.36939 * 120.00037 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00126 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99966 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46920 * 90.00220 * 22 20 18 24 24 H 1.48494 * 109.47145 * 210.00039 * 22 20 18 25 25 H 1.48493 * 109.47253 * 330.00674 * 22 20 18 26 26 C 1.47011 * 110.99955 * 169.99762 * 3 2 1 27 27 H 1.08999 * 109.47539 * 300.00013 * 1 2 3 28 28 H 1.08998 * 109.46972 * 60.00317 * 1 2 3 29 29 H 1.09010 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47080 * 240.00229 * 2 1 3 31 31 H 1.08998 * 109.46972 * 119.99683 * 2 1 3 32 32 H 1.09002 * 109.50413 * 297.54113 * 4 3 2 33 33 H 1.08995 * 109.50577 * 57.62837 * 4 3 2 34 34 H 1.08996 * 109.50767 * 176.78165 * 5 4 3 35 35 H 1.09004 * 109.49932 * 296.86743 * 5 4 3 36 36 H 0.96993 * 120.00319 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.47312 * 300.00532 * 14 12 11 38 38 H 1.09004 * 109.46964 * 60.00330 * 14 12 11 39 39 H 1.08994 * 109.47359 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.47398 * 54.99796 * 15 12 11 41 41 H 1.09001 * 109.47194 * 174.99977 * 15 12 11 42 42 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 43 43 H 1.08998 * 109.47533 * 59.99948 * 16 15 12 44 44 H 0.97004 * 119.99396 * 0.02562 * 17 16 15 45 45 H 0.97001 * 119.99359 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.50349 * 62.45405 * 26 3 2 47 47 H 1.09004 * 109.54128 * 302.35294 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6764 2.0652 -1.2573 5 6 2.1513 3.5191 -1.1910 6 8 3.5567 3.5455 -0.9271 7 6 3.9265 2.8916 0.2898 8 1 3.4493 3.3929 1.1319 9 6 5.4234 2.9450 0.4551 10 8 6.1147 3.4092 -0.4267 11 7 5.9940 2.4767 1.5827 12 6 7.4493 2.5291 1.7435 13 1 7.8351 3.4311 1.2688 14 6 8.0794 1.2984 1.0883 15 6 7.7973 2.5481 3.2333 16 6 7.2738 3.8406 3.8629 17 7 7.6075 3.8592 5.2892 18 6 7.2380 4.9254 6.0650 19 1 6.7002 5.7523 5.6255 20 6 7.5539 4.9427 7.4167 21 7 8.2089 3.9345 7.9524 22 14 7.0504 6.3974 8.4748 23 1 5.7026 6.1502 9.0472 24 1 8.0314 6.5715 9.5760 25 1 7.0169 7.6267 7.6427 26 6 3.4695 1.4314 0.2384 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1662 1.5600 -2.0898 33 1 0.5963 2.0406 -1.4013 34 1 1.9502 4.0115 -2.1424 35 1 1.6213 4.0390 -0.3929 36 1 5.4412 2.1050 2.2878 37 1 7.6936 0.3963 1.5632 38 1 7.8314 1.2848 0.0270 39 1 9.1620 1.3371 1.2084 40 1 7.3362 1.6916 3.7252 41 1 8.8794 2.4975 3.3543 42 1 7.7349 4.6971 3.3710 43 1 6.1917 3.8914 3.7419 44 1 8.0910 3.1165 5.6838 45 1 8.4299 3.9469 8.8968 46 1 3.9879 0.9160 -0.5701 47 1 3.6989 0.9445 1.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668320658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:39 Heat of formation + Delta-G solvation = -95.364163 kcal Electronic energy + Delta-G solvation = -24957.238627 eV Core-core repulsion = 21367.161108 eV Total energy + Delta-G solvation = -3590.077519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51802 -40.03797 -37.89450 -37.11181 -36.08714 -33.88072 -33.00221 -31.85076 -31.55494 -29.42341 -27.97979 -25.88975 -25.48592 -23.86970 -23.16099 -22.08864 -21.60724 -21.34205 -19.25714 -18.47924 -17.91154 -17.16604 -16.84269 -16.68079 -16.58043 -16.23688 -15.68356 -15.54862 -15.33171 -15.24758 -15.02921 -14.87451 -14.62216 -14.27016 -13.92932 -13.59683 -13.12673 -13.03483 -12.90291 -12.88450 -12.85683 -12.73250 -12.50194 -12.38284 -12.26349 -11.99878 -11.93135 -11.80077 -11.76722 -11.64101 -10.95272 -10.86051 -10.72601 -10.14215 -9.49589 -9.00660 -7.96148 -5.24955 1.47098 1.47793 1.49093 1.57784 1.79375 2.55612 2.65137 3.01083 3.37595 3.57682 3.63545 3.73679 3.88010 3.94377 4.04343 4.06655 4.16781 4.24640 4.29172 4.39465 4.48587 4.49382 4.56749 4.59737 4.64216 4.65253 4.71725 4.78090 4.85331 4.87575 4.99034 4.99394 5.08461 5.21088 5.27300 5.33722 5.35379 5.48717 5.52126 5.82301 5.93082 5.98928 6.26738 6.50060 7.16378 7.33366 8.08401 8.32694 9.27145 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.003028 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.400211 B = 9244.401386 C = 9923.444123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.541 5.541 4 C 0.016 3.984 5 C 0.056 3.944 6 O -0.388 6.388 7 C 0.080 3.920 8 H 0.103 0.897 9 C 0.521 3.479 10 O -0.568 6.568 11 N -0.705 5.705 12 C 0.152 3.848 13 H 0.067 0.933 14 C -0.152 4.152 15 C -0.117 4.117 16 C 0.153 3.847 17 N -0.745 5.745 18 C -0.249 4.249 19 H 0.071 0.929 20 C -0.072 4.072 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.038 3.962 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.005 0.995 43 H 0.024 0.976 44 H 0.376 0.624 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.112 -10.718 -18.999 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 N -0.267 5.267 4 C -0.112 4.112 5 C -0.020 4.020 6 O -0.307 6.307 7 C 0.019 3.981 8 H 0.120 0.880 9 C 0.307 3.693 10 O -0.446 6.446 11 N -0.358 5.358 12 C 0.048 3.952 13 H 0.085 0.915 14 C -0.210 4.210 15 C -0.155 4.155 16 C 0.026 3.974 17 N -0.388 5.388 18 C -0.381 4.381 19 H 0.089 0.911 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.801 3.199 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.198 1.198 26 C -0.090 4.090 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.023 0.977 43 H 0.042 0.958 44 H 0.208 0.792 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.791 -9.884 -19.352 26.286 hybrid contribution 0.189 -0.004 0.661 0.687 sum -14.602 -9.888 -18.691 25.698 Atomic orbital electron populations 1.21773 0.93484 1.02525 1.02471 1.22194 0.97170 0.87123 1.01444 1.62288 1.12026 1.17739 1.34632 1.22895 1.03080 0.94958 0.90262 1.22985 0.79737 0.96079 1.03208 1.88084 1.25571 1.77098 1.39906 1.21946 0.91262 0.94929 0.89997 0.87970 1.20441 0.89837 0.77046 0.82006 1.90689 1.65149 1.46273 1.42482 1.45958 1.08377 1.62520 1.18970 1.20857 0.79506 0.99679 0.95202 0.91487 1.22078 1.01656 0.97210 1.00098 1.21893 1.02499 0.97894 0.93254 1.20773 0.97089 0.95853 0.83667 1.42551 1.68659 1.22531 1.05067 1.19597 1.29005 0.98315 0.91144 0.91134 1.25542 1.01811 1.00886 0.98246 1.69801 1.46573 1.33149 1.12226 0.85164 0.77219 0.79209 0.78319 1.21063 1.22021 1.19811 1.22574 0.89057 0.94192 1.03214 0.92166 0.92304 0.90959 0.94638 0.89838 0.94435 0.87070 0.86358 0.91397 0.74954 0.90713 0.93379 0.90446 0.89892 0.89994 0.97710 0.95763 0.79175 0.93881 0.94356 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.85 71.98 0.71 -0.68 16 2 C 0.05 0.58 5.68 86.30 0.49 1.07 16 3 N -0.54 -8.44 4.73 -895.23 -4.23 -12.67 16 4 C 0.02 0.23 5.44 86.31 0.47 0.70 16 5 C 0.06 0.96 7.01 72.01 0.50 1.46 16 6 O -0.39 -10.14 10.01 -130.02 -1.30 -11.45 16 7 C 0.08 1.84 3.22 29.88 0.10 1.93 16 8 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 9 C 0.52 14.65 7.15 87.66 0.63 15.27 16 10 O -0.57 -21.12 16.17 15.93 0.26 -20.86 16 11 N -0.70 -16.81 4.49 -442.53 -1.99 -18.80 16 12 C 0.15 3.97 2.57 44.99 0.12 4.08 16 13 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 14 C -0.15 -3.27 9.48 71.98 0.68 -2.59 16 15 C -0.12 -3.41 4.87 30.59 0.15 -3.26 16 16 C 0.15 6.00 6.15 86.38 0.53 6.53 16 17 N -0.75 -37.60 5.60 -343.46 -1.92 -39.52 16 18 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 21 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 22 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 C 0.04 0.68 4.88 86.31 0.42 1.10 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.51 6.51 -2.39 -0.02 0.50 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.04 0.43 8.12 -2.39 -0.02 0.42 16 31 H 0.08 0.94 8.04 -2.39 -0.02 0.92 16 32 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 1.14 6.38 -2.39 -0.02 1.12 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.41 7.96 8.47 -92.71 -0.79 7.17 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.14 8.14 -2.38 -0.02 1.13 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 42 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.02 0.94 7.75 -2.39 -0.02 0.92 16 44 H 0.38 19.81 7.67 -92.71 -0.71 19.10 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.11 1.53 7.96 -2.38 -0.02 1.51 16 Total: -1.00 -73.24 377.18 -1.32 -74.57 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.55 Total: 30.19 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.10 Total: 8.76 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -7.86 Total: -129.37 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.04 Total: -32.31 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -73.24 -1.32 -74.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668320658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.797 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds