Wall clock time and date at job start Tue Mar 31 2020 03:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47168 * 2 1 4 4 C 1.47012 * 111.00538 * 66.04192 * 3 2 1 5 5 C 1.53091 * 109.26181 * 182.39285 * 4 3 2 6 6 O 1.43008 * 109.26168 * 303.15356 * 5 4 3 7 7 C 1.43023 * 113.73673 * 58.66879 * 6 5 4 8 8 H 1.08994 * 109.50373 * 61.31173 * 7 6 5 9 9 C 1.50703 * 109.50564 * 181.39751 * 7 6 5 10 10 O 1.21279 * 119.99949 * 4.91449 * 9 7 6 11 11 N 1.34778 * 119.99961 * 184.91334 * 9 7 6 12 12 C 1.46496 * 119.99890 * 179.97438 * 11 9 7 13 13 H 1.08992 * 109.47401 * 324.99797 * 12 11 9 14 14 C 1.52999 * 109.47217 * 85.00106 * 12 11 9 15 15 C 1.53006 * 109.47070 * 204.99752 * 12 11 9 16 16 C 1.52999 * 109.46626 * 64.99833 * 15 12 11 17 17 N 1.46506 * 109.46691 * 179.97438 * 16 15 12 18 18 C 1.36938 * 119.99597 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00321 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99825 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99912 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00145 * 22 20 18 24 24 H 1.48505 * 109.47234 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47290 * 300.00140 * 22 20 18 26 26 C 1.47018 * 110.99651 * 189.72902 * 3 2 1 27 27 H 1.09001 * 109.47237 * 300.00453 * 1 2 3 28 28 H 1.09001 * 109.47373 * 60.00069 * 1 2 3 29 29 H 1.09001 * 109.47750 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47237 * 239.99547 * 2 1 3 31 31 H 1.09002 * 109.46975 * 119.99268 * 2 1 3 32 32 H 1.09007 * 109.50363 * 62.45784 * 4 3 2 33 33 H 1.09004 * 109.50303 * 302.33499 * 4 3 2 34 34 H 1.08998 * 109.51010 * 183.21744 * 5 4 3 35 35 H 1.09008 * 109.50582 * 63.08955 * 5 4 3 36 36 H 0.97001 * 119.99750 * 359.97438 * 11 9 7 37 37 H 1.09009 * 109.47170 * 59.99872 * 14 12 11 38 38 H 1.09001 * 109.47273 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.46911 * 299.99724 * 14 12 11 40 40 H 1.08993 * 109.46955 * 185.00306 * 15 12 11 41 41 H 1.09000 * 109.47050 * 305.00134 * 15 12 11 42 42 H 1.08993 * 109.47839 * 299.99931 * 16 15 12 43 43 H 1.09000 * 109.47160 * 60.00369 * 16 15 12 44 44 H 0.96999 * 120.00076 * 0.02562 * 17 16 15 45 45 H 0.97000 * 120.00284 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.54867 * 57.69341 * 26 3 2 47 47 H 1.08994 * 109.46759 * 297.55395 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0676 1.2542 5 6 2.1452 3.5213 1.1875 6 8 3.5520 3.5463 0.9316 7 6 3.9281 2.8909 -0.2827 8 1 3.4554 3.3913 -1.1277 9 6 5.4259 2.9438 -0.4400 10 8 6.1126 3.4090 0.4448 11 7 6.0024 2.4742 -1.5641 12 6 7.4584 2.5262 -1.7174 13 1 7.8419 3.4287 -1.2416 14 6 8.0849 1.2962 -1.0574 15 6 7.8144 2.5435 -3.2053 16 6 7.2942 3.8353 -3.8390 17 7 7.6356 3.8521 -5.2637 18 6 7.2693 4.9170 -6.0429 19 1 6.7292 5.7445 -5.6072 20 6 7.5923 4.9328 -7.3928 21 7 8.2500 3.9240 -7.9239 22 14 7.0933 6.3856 -8.4556 23 1 7.7151 7.6248 -7.9236 24 1 7.5526 6.1600 -9.8497 25 1 5.6151 6.5268 -8.4387 26 6 3.4707 1.4307 -0.2319 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.1552 1.5639 2.0903 33 1 0.5889 2.0440 1.3921 34 1 1.9392 4.0155 2.1369 35 1 1.6200 4.0395 0.3851 36 1 5.4532 2.1018 -2.2717 37 1 7.7015 0.3936 -1.5333 38 1 9.1682 1.3347 -1.1718 39 1 7.8314 1.2839 0.0026 40 1 8.8970 2.4925 -3.3205 41 1 7.3557 1.6865 -3.6986 42 1 6.2116 3.8863 -3.7239 43 1 7.7529 4.6923 -3.3458 44 1 8.1203 3.1087 -5.6551 45 1 8.4761 3.9352 -8.8672 46 1 3.7043 0.9431 -1.1784 47 1 3.9847 0.9163 0.5799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668320659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:45 Heat of formation + Delta-G solvation = -70.170024 kcal Electronic energy + Delta-G solvation = -24956.268210 eV Core-core repulsion = 21367.283191 eV Total energy + Delta-G solvation = -3588.985019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56089 -39.08247 -36.71329 -36.16976 -34.34538 -32.64375 -31.47748 -31.22590 -30.38951 -27.87685 -27.21932 -24.75893 -24.02478 -23.03526 -21.70455 -20.98806 -20.70701 -20.33039 -17.67464 -17.08884 -16.86151 -16.36179 -15.89705 -15.67147 -15.54175 -14.87707 -14.72537 -14.41949 -14.17241 -13.96523 -13.78573 -13.43047 -13.34264 -13.14074 -12.81949 -12.52231 -12.40498 -12.25599 -12.07782 -11.87873 -11.78209 -11.26418 -11.21399 -11.05648 -10.99681 -10.77851 -10.63431 -10.57185 -10.06584 -9.98315 -9.70081 -9.65425 -9.02595 -8.85101 -8.82972 -6.92244 -5.76341 -3.05072 2.55994 2.77101 3.34019 3.44993 3.49145 3.50364 3.85370 4.41196 4.50405 4.55548 4.57768 4.69771 4.74300 4.86395 4.92960 4.97837 5.05648 5.10429 5.18537 5.23854 5.29862 5.35385 5.38957 5.50553 5.52574 5.55535 5.59754 5.71743 5.75329 5.81523 5.93112 6.02824 6.23059 6.27855 6.33903 6.48439 6.51456 6.53546 6.78567 6.82058 6.88021 7.52675 7.70449 8.23510 8.42816 9.53806 10.11422 10.46151 11.46558 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003028 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.685596 B = 9245.455494 C = 9924.516033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.013 3.987 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.077 3.923 8 H 0.095 0.905 9 C 0.522 3.478 10 O -0.521 6.521 11 N -0.715 5.715 12 C 0.146 3.854 13 H 0.089 0.911 14 C -0.161 4.161 15 C -0.134 4.134 16 C 0.154 3.846 17 N -0.734 5.734 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.031 3.969 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.402 0.598 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.256 0.744 46 H 0.093 0.907 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.755 -10.008 18.804 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.115 4.115 5 C -0.015 4.015 6 O -0.273 6.273 7 C 0.015 3.985 8 H 0.113 0.887 9 C 0.306 3.694 10 O -0.396 6.396 11 N -0.369 5.369 12 C 0.042 3.958 13 H 0.108 0.892 14 C -0.219 4.219 15 C -0.173 4.173 16 C 0.026 3.974 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.098 4.098 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.237 0.763 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.403 -9.169 19.136 25.098 hybrid contribution -0.233 -0.224 -0.679 0.752 sum -13.636 -9.394 18.456 24.796 Atomic orbital electron populations 1.21801 0.94481 1.01791 1.02611 1.22115 0.96390 0.88081 1.01183 1.62229 1.12704 1.16588 1.34597 1.22890 1.01984 0.95886 0.90756 1.22751 0.81518 0.94985 1.02276 1.88128 1.23064 1.76522 1.39591 1.21963 0.93131 0.93342 0.90063 0.88701 1.19968 0.88803 0.78101 0.82503 1.90715 1.64256 1.44068 1.40541 1.46036 1.08528 1.63166 1.19139 1.21001 0.78789 0.99429 0.96587 0.89244 1.22165 1.01129 0.97769 1.00854 1.22065 1.02468 1.00084 0.92639 1.20639 0.96796 0.93784 0.86190 1.42358 1.68661 1.23447 1.03347 1.19195 1.29680 0.97683 0.90558 0.91276 1.24739 1.01162 0.98149 0.96946 1.69646 1.44953 1.31270 1.12484 0.86260 0.78106 0.82118 0.79667 1.21243 1.21673 1.21249 1.22652 0.88389 0.95980 1.02735 0.92697 0.91557 0.92081 0.90285 0.94696 0.93766 0.89099 0.87886 0.91859 0.76335 0.92512 0.91425 0.92460 0.90152 0.91320 0.96360 0.96383 0.78325 0.93470 0.88834 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.84 37.16 0.37 -0.52 16 2 C 0.05 0.35 5.68 -3.83 -0.02 0.33 16 3 N -0.54 -4.65 4.73 -234.31 -1.11 -5.75 16 4 C 0.01 0.10 5.44 -3.72 -0.02 0.08 16 5 C 0.06 0.56 7.01 37.20 0.26 0.82 16 6 O -0.36 -4.68 10.01 -55.06 -0.55 -5.23 16 7 C 0.08 0.90 3.22 -27.83 -0.09 0.81 16 8 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 9 C 0.52 7.38 7.15 -10.98 -0.08 7.30 16 10 O -0.52 -9.49 16.17 -14.27 -0.23 -9.72 16 11 N -0.72 -8.87 4.49 -53.81 -0.24 -9.11 16 12 C 0.15 1.97 2.57 -67.93 -0.17 1.79 16 13 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 14 C -0.16 -1.86 9.48 37.16 0.35 -1.50 16 15 C -0.13 -2.03 4.87 -26.73 -0.13 -2.16 16 16 C 0.15 3.06 6.15 -4.04 -0.02 3.03 16 17 N -0.73 -18.60 5.60 -59.91 -0.34 -18.93 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.03 0.29 4.89 -3.71 -0.02 0.28 16 27 H 0.05 0.30 6.51 -51.93 -0.34 -0.03 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 31 H 0.03 0.25 8.12 -51.93 -0.42 -0.18 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.57 6.37 -51.93 -0.33 0.24 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 37 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.38 10.10 7.67 -40.82 -0.31 9.79 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.09 0.75 7.96 -51.93 -0.41 0.34 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -34.17 377.17 -9.33 -43.50 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -8.42 Total: 6.80 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 0.17 Total: 2.82 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.96 Total: -61.38 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.78 Total: -14.95 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.17 -9.33 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668320659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.673 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds