Wall clock time and date at job start Tue Mar 31 2020 03:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47168 * 2 1 4 4 C 1.47012 * 111.00538 * 66.04192 * 3 2 1 5 5 C 1.53091 * 109.26181 * 182.39285 * 4 3 2 6 6 O 1.43008 * 109.26168 * 303.15356 * 5 4 3 7 7 C 1.43023 * 113.73673 * 58.66879 * 6 5 4 8 8 H 1.08994 * 109.50373 * 61.31173 * 7 6 5 9 9 C 1.50703 * 109.50564 * 181.39751 * 7 6 5 10 10 O 1.21279 * 119.99949 * 4.91449 * 9 7 6 11 11 N 1.34778 * 119.99961 * 184.91334 * 9 7 6 12 12 C 1.46496 * 119.99890 * 179.97438 * 11 9 7 13 13 H 1.08992 * 109.47401 * 324.99797 * 12 11 9 14 14 C 1.52999 * 109.47217 * 85.00106 * 12 11 9 15 15 C 1.53006 * 109.47070 * 204.99752 * 12 11 9 16 16 C 1.52999 * 109.46626 * 64.99833 * 15 12 11 17 17 N 1.46506 * 109.46691 * 179.97438 * 16 15 12 18 18 C 1.36938 * 119.99597 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00321 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99825 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99912 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00145 * 22 20 18 24 24 H 1.48505 * 109.47234 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47290 * 300.00140 * 22 20 18 26 26 C 1.47018 * 110.99651 * 189.72902 * 3 2 1 27 27 H 1.09001 * 109.47237 * 300.00453 * 1 2 3 28 28 H 1.09001 * 109.47373 * 60.00069 * 1 2 3 29 29 H 1.09001 * 109.47750 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47237 * 239.99547 * 2 1 3 31 31 H 1.09002 * 109.46975 * 119.99268 * 2 1 3 32 32 H 1.09007 * 109.50363 * 62.45784 * 4 3 2 33 33 H 1.09004 * 109.50303 * 302.33499 * 4 3 2 34 34 H 1.08998 * 109.51010 * 183.21744 * 5 4 3 35 35 H 1.09008 * 109.50582 * 63.08955 * 5 4 3 36 36 H 0.97001 * 119.99750 * 359.97438 * 11 9 7 37 37 H 1.09009 * 109.47170 * 59.99872 * 14 12 11 38 38 H 1.09001 * 109.47273 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.46911 * 299.99724 * 14 12 11 40 40 H 1.08993 * 109.46955 * 185.00306 * 15 12 11 41 41 H 1.09000 * 109.47050 * 305.00134 * 15 12 11 42 42 H 1.08993 * 109.47839 * 299.99931 * 16 15 12 43 43 H 1.09000 * 109.47160 * 60.00369 * 16 15 12 44 44 H 0.96999 * 120.00076 * 0.02562 * 17 16 15 45 45 H 0.97000 * 120.00284 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.54867 * 57.69341 * 26 3 2 47 47 H 1.08994 * 109.46759 * 297.55395 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0676 1.2542 5 6 2.1452 3.5213 1.1875 6 8 3.5520 3.5463 0.9316 7 6 3.9281 2.8909 -0.2827 8 1 3.4554 3.3913 -1.1277 9 6 5.4259 2.9438 -0.4400 10 8 6.1126 3.4090 0.4448 11 7 6.0024 2.4742 -1.5641 12 6 7.4584 2.5262 -1.7174 13 1 7.8419 3.4287 -1.2416 14 6 8.0849 1.2962 -1.0574 15 6 7.8144 2.5435 -3.2053 16 6 7.2942 3.8353 -3.8390 17 7 7.6356 3.8521 -5.2637 18 6 7.2693 4.9170 -6.0429 19 1 6.7292 5.7445 -5.6072 20 6 7.5923 4.9328 -7.3928 21 7 8.2500 3.9240 -7.9239 22 14 7.0933 6.3856 -8.4556 23 1 7.7151 7.6248 -7.9236 24 1 7.5526 6.1600 -9.8497 25 1 5.6151 6.5268 -8.4387 26 6 3.4707 1.4307 -0.2319 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.1552 1.5639 2.0903 33 1 0.5889 2.0440 1.3921 34 1 1.9392 4.0155 2.1369 35 1 1.6200 4.0395 0.3851 36 1 5.4532 2.1018 -2.2717 37 1 7.7015 0.3936 -1.5333 38 1 9.1682 1.3347 -1.1718 39 1 7.8314 1.2839 0.0026 40 1 8.8970 2.4925 -3.3205 41 1 7.3557 1.6865 -3.6986 42 1 6.2116 3.8863 -3.7239 43 1 7.7529 4.6923 -3.3458 44 1 8.1203 3.1087 -5.6551 45 1 8.4761 3.9352 -8.8672 46 1 3.7043 0.9431 -1.1784 47 1 3.9847 0.9163 0.5799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668320659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:44 Heat of formation + Delta-G solvation = -95.239701 kcal Electronic energy + Delta-G solvation = -24957.355313 eV Core-core repulsion = 21367.283191 eV Total energy + Delta-G solvation = -3590.072121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.51784 -40.03844 -37.89414 -37.11229 -36.08599 -33.88081 -33.00282 -31.84852 -31.55517 -29.42255 -27.98135 -25.88719 -25.48473 -23.87088 -23.16054 -22.08849 -21.60526 -21.34169 -19.25534 -18.47882 -17.91190 -17.16617 -16.84197 -16.68086 -16.58025 -16.23806 -15.68397 -15.54663 -15.33167 -15.24653 -15.03134 -14.87380 -14.62170 -14.26827 -13.93080 -13.59734 -13.12428 -13.03598 -12.90143 -12.87007 -12.85068 -12.73182 -12.50158 -12.36870 -12.30262 -12.00261 -11.93326 -11.80159 -11.76685 -11.64018 -10.94521 -10.86076 -10.72519 -10.14210 -9.49458 -9.00652 -7.95864 -5.24783 1.47080 1.47680 1.50394 1.56650 1.79361 2.55813 2.65091 3.01066 3.37664 3.57657 3.63498 3.73691 3.88051 3.94396 4.04352 4.06663 4.16792 4.24628 4.29118 4.39563 4.48630 4.49340 4.56740 4.59681 4.64181 4.65254 4.71702 4.78108 4.85311 4.87510 4.99026 4.99383 5.08467 5.21122 5.27303 5.33715 5.35306 5.48469 5.52140 5.82347 5.93102 5.98908 6.26797 6.50009 7.16348 7.33449 8.08572 8.32894 9.27220 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003028 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.685596 B = 9245.455494 C = 9924.516033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.541 5.541 4 C 0.016 3.984 5 C 0.056 3.944 6 O -0.388 6.388 7 C 0.080 3.920 8 H 0.103 0.897 9 C 0.521 3.479 10 O -0.568 6.568 11 N -0.705 5.705 12 C 0.152 3.848 13 H 0.067 0.933 14 C -0.152 4.152 15 C -0.117 4.117 16 C 0.153 3.847 17 N -0.745 5.745 18 C -0.250 4.250 19 H 0.071 0.929 20 C -0.072 4.072 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.276 1.276 26 C 0.039 3.961 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.024 0.976 43 H 0.005 0.995 44 H 0.376 0.624 45 H 0.253 0.747 46 H 0.110 0.890 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 -10.705 18.891 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 N -0.267 5.267 4 C -0.112 4.112 5 C -0.020 4.020 6 O -0.307 6.307 7 C 0.019 3.981 8 H 0.120 0.880 9 C 0.307 3.693 10 O -0.446 6.446 11 N -0.358 5.358 12 C 0.048 3.952 13 H 0.085 0.915 14 C -0.210 4.210 15 C -0.155 4.155 16 C 0.026 3.974 17 N -0.388 5.388 18 C -0.382 4.382 19 H 0.089 0.911 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.801 3.199 23 H -0.207 1.207 24 H -0.219 1.219 25 H -0.202 1.202 26 C -0.090 4.090 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.042 0.958 43 H 0.023 0.977 44 H 0.208 0.792 45 H 0.061 0.939 46 H 0.128 0.872 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.912 -9.879 19.235 26.267 hybrid contribution 0.199 0.010 -0.646 0.675 sum -14.713 -9.870 18.589 25.680 Atomic orbital electron populations 1.21773 0.93483 1.02533 1.02474 1.22192 0.97167 0.87125 1.01438 1.62274 1.11856 1.17666 1.34919 1.22897 1.03062 0.94940 0.90295 1.22988 0.79686 0.96087 1.03253 1.88084 1.25428 1.77043 1.40106 1.21951 0.91215 0.94914 0.90061 0.87970 1.20442 0.89821 0.77051 0.82016 1.90689 1.65473 1.46263 1.42169 1.45957 1.08319 1.62465 1.19081 1.20856 0.79473 0.99683 0.95235 0.91489 1.22079 1.01671 0.97218 1.00075 1.21893 1.02485 0.97902 0.93259 1.20773 0.97057 0.95857 0.83692 1.42543 1.68534 1.22534 1.05191 1.19568 1.29056 0.98380 0.91219 0.91135 1.25541 1.01763 1.00863 0.98271 1.69791 1.46361 1.33105 1.12489 0.85238 0.78099 0.79014 0.77573 1.20693 1.21873 1.20218 1.22576 0.89044 0.94193 1.03207 0.92299 0.92161 0.90955 0.89833 0.94653 0.94433 0.87065 0.86353 0.91394 0.74953 0.90711 0.90447 0.93379 0.89995 0.89894 0.95774 0.97707 0.79176 0.93865 0.87203 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.84 71.98 0.71 -0.69 16 2 C 0.05 0.58 5.68 86.30 0.49 1.07 16 3 N -0.54 -8.45 4.73 -895.22 -4.23 -12.69 16 4 C 0.02 0.23 5.44 86.31 0.47 0.70 16 5 C 0.06 0.96 7.01 72.01 0.50 1.46 16 6 O -0.39 -10.15 10.01 -130.02 -1.30 -11.45 16 7 C 0.08 1.83 3.22 29.88 0.10 1.93 16 8 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 9 C 0.52 14.66 7.15 87.66 0.63 15.28 16 10 O -0.57 -21.13 16.17 15.93 0.26 -20.87 16 11 N -0.70 -16.82 4.49 -442.54 -1.99 -18.81 16 12 C 0.15 3.97 2.57 44.99 0.12 4.08 16 13 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 14 C -0.15 -3.28 9.48 71.98 0.68 -2.59 16 15 C -0.12 -3.41 4.87 30.60 0.15 -3.26 16 16 C 0.15 6.01 6.15 86.38 0.53 6.54 16 17 N -0.75 -37.62 5.60 -343.45 -1.92 -39.55 16 18 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 22 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 C 0.04 0.68 4.89 86.32 0.42 1.10 16 27 H 0.06 0.51 6.51 -2.39 -0.02 0.50 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.94 8.04 -2.39 -0.02 0.92 16 31 H 0.04 0.43 8.12 -2.39 -0.02 0.41 16 32 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.11 1.14 6.37 -2.38 -0.02 1.12 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.41 7.97 8.47 -92.71 -0.79 7.18 16 37 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.02 0.93 7.75 -2.39 -0.02 0.92 16 43 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.38 19.83 7.67 -92.71 -0.71 19.12 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.11 1.53 7.96 -2.39 -0.02 1.51 16 47 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -73.23 377.17 -1.32 -74.56 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.55 Total: 30.37 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.10 Total: 8.70 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -7.86 Total: -129.44 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -1.04 Total: -32.32 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -73.23 -1.32 -74.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668320659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.684 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds