Wall clock time and date at job start Tue Mar 31 2020 03:40:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46499 * 119.99537 * 2 1
4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1
5 5 C 1.52995 * 109.47427 * 179.97438 * 4 3 2
6 6 N 1.46503 * 109.47393 * 180.02562 * 5 4 3
7 7 C 1.36936 * 119.99889 * 180.02562 * 6 5 4
8 8 H 1.07996 * 120.00380 * 359.97438 * 7 6 5
9 9 C 1.38809 * 119.99703 * 180.02562 * 7 6 5
10 10 N 1.31617 * 120.00285 * 359.97438 * 9 7 6
11 11 Si 1.86804 * 120.00110 * 179.97438 * 9 7 6
12 12 H 1.48498 * 109.46931 * 59.99781 * 11 9 7
13 13 H 1.48500 * 109.47159 * 179.97438 * 11 9 7
14 14 H 1.48505 * 109.46990 * 299.99945 * 11 9 7
15 15 C 1.34777 * 120.00264 * 179.97438 * 2 1 3
16 16 O 1.21283 * 119.99750 * 180.02562 * 15 2 1
17 17 C 1.50702 * 119.99928 * 0.28128 * 15 2 1
18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 2
19 19 N 1.46896 * 109.47255 * 179.97438 * 18 17 15
20 20 C 1.47011 * 111.00147 * 293.63572 * 19 18 17
21 21 C 1.53094 * 109.25974 * 177.60789 * 20 19 18
22 22 O 1.43021 * 109.25896 * 56.84664 * 21 20 19
23 23 C 1.43018 * 113.73452 * 301.32819 * 22 21 20
24 24 C 1.47014 * 111.00110 * 169.99532 * 19 18 17
25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3
26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3
27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3
28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1
29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1
30 30 H 1.08999 * 109.47707 * 300.00330 * 4 3 2
31 31 H 1.09005 * 109.46685 * 60.00344 * 4 3 2
32 32 H 1.09006 * 109.47343 * 300.00688 * 5 4 3
33 33 H 1.09005 * 109.46868 * 60.00504 * 5 4 3
34 34 H 0.96998 * 119.99783 * 0.02562 * 6 5 4
35 35 H 0.96997 * 120.00450 * 180.02562 * 10 9 7
36 36 H 1.09004 * 109.46965 * 299.72211 * 17 15 2
37 37 H 1.08994 * 109.46990 * 59.72065 * 17 15 2
38 38 H 1.09004 * 109.47066 * 299.99797 * 18 17 15
39 39 H 1.09000 * 109.47234 * 59.99288 * 18 17 15
40 40 H 1.09000 * 109.50332 * 297.54157 * 20 19 18
41 41 H 1.08997 * 109.50991 * 57.67014 * 20 19 18
42 42 H 1.09001 * 109.50572 * 296.91080 * 21 20 19
43 43 H 1.09001 * 109.54430 * 176.80128 * 21 20 19
44 44 H 1.08991 * 109.50838 * 298.73244 * 23 22 21
45 45 H 1.09003 * 109.53416 * 178.62445 * 23 22 21
46 46 H 1.09003 * 109.50880 * 302.33143 * 24 19 18
47 47 H 1.09008 * 109.50352 * 62.41683 * 24 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.4526 1.7104 -1.4425
5 6 3.2169 3.0357 -1.4426
6 7 3.4606 3.4589 -2.8239
7 6 4.1336 4.6249 -3.0741
8 1 4.4843 5.2328 -2.2533
9 6 4.3640 5.0261 -4.3828
10 7 3.9362 4.2855 -5.3832
11 14 5.2815 6.6171 -4.7243
12 1 6.6391 6.5435 -4.1272
13 1 5.3965 6.8171 -6.1912
14 1 4.5385 7.7551 -4.1257
15 6 2.1390 -1.1672 0.0005
16 8 3.3518 -1.1671 0.0010
17 6 1.3855 -2.4723 -0.0053
18 6 2.3798 -3.6352 -0.0104
19 7 1.6454 -4.9073 -0.0154
20 6 0.9058 -5.0937 1.2413
21 6 0.1095 -6.3993 1.1698
22 8 1.0034 -7.4831 0.9017
23 6 1.7396 -7.3345 -0.3154
24 6 2.5525 -6.0384 -0.2588
25 1 -0.3633 0.0000 1.0277
26 1 -0.3633 0.8899 -0.5139
27 1 -0.3632 -0.8900 -0.5138
28 1 1.6083 2.0285 0.5137
29 1 3.1499 1.1385 0.5139
30 1 3.0417 0.9508 -1.9563
31 1 1.5001 1.8406 -1.9564
32 1 2.6274 3.7952 -0.9289
33 1 4.1693 2.9059 -0.9286
34 1 3.1453 2.9131 -3.5611
35 1 4.0975 4.5656 -6.2977
36 1 0.7588 -2.5340 0.8844
37 1 0.7590 -2.5261 -0.8955
38 1 3.0065 -3.5735 -0.9001
39 1 3.0065 -3.5813 0.8798
40 1 1.6083 -5.1410 2.0734
41 1 0.2219 -4.2579 1.3886
42 1 -0.6298 -6.3314 0.3717
43 1 -0.3958 -6.5709 2.1203
44 1 1.0478 -7.2938 -1.1566
45 1 2.4139 -8.1819 -0.4392
46 1 3.0707 -5.8920 -1.2065
47 1 3.2818 -6.1003 0.5490
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001670283736.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:40:03
Heat of formation + Delta-G solvation = -64.808034 kcal
Electronic energy + Delta-G solvation = -24165.781649 eV
Core-core repulsion = 20577.029143 eV
Total energy + Delta-G solvation = -3588.752505 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-40.27151 -39.63302 -36.58065 -35.98568 -34.80857 -32.53348 -31.74602 -31.33241
-29.72692 -27.42363 -26.94754 -25.18124 -24.44390 -23.28041 -22.12342 -20.91529
-20.71125 -19.10537 -17.55684 -17.03427 -16.58776 -16.44031 -16.25472 -16.01785
-15.46538 -15.21728 -14.98549 -14.57929 -14.49007 -14.09287 -13.85941 -13.34642
-13.20583 -12.98280 -12.92158 -12.70570 -12.56612 -12.36132 -11.98663 -11.89113
-11.79442 -11.65875 -11.22102 -10.90746 -10.90395 -10.81399 -10.72674 -10.37692
-10.09479 -10.08318 -9.80039 -9.67221 -8.83350 -8.80704 -8.67894 -6.88519
-5.72707 -3.01464 2.58303 2.85780 3.38143 3.46674 3.50372 3.51518
3.52107 4.41642 4.45646 4.51767 4.60981 4.62906 4.75030 4.76638
4.87215 4.92838 4.97200 5.09378 5.16405 5.20696 5.24564 5.29936
5.39213 5.43624 5.44370 5.49310 5.54133 5.59655 5.65862 5.68365
5.71479 5.94096 6.10244 6.32431 6.41340 6.52358 6.53525 6.54617
6.73041 6.88846 6.91377 7.32188 7.72579 8.13458 8.46277 9.56884
10.15658 10.50348 11.50351
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.029455 B = 0.002137 C = 0.002057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.376548 B =13100.512593 C =13608.993069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.616 5.616
3 C 0.118 3.882
4 C -0.138 4.138
5 C 0.156 3.844
6 N -0.733 5.733
7 C -0.239 4.239
8 H 0.070 0.930
9 C -0.016 4.016
10 N -0.935 5.935
11 Si 0.909 3.091
12 H -0.286 1.286
13 H -0.291 1.291
14 H -0.286 1.286
15 C 0.511 3.489
16 O -0.537 6.537
17 C -0.134 4.134
18 C 0.070 3.930
19 N -0.538 5.538
20 C 0.012 3.988
21 C 0.064 3.936
22 O -0.387 6.387
23 C 0.064 3.936
24 C 0.018 3.982
25 H 0.055 0.945
26 H 0.076 0.924
27 H 0.071 0.929
28 H 0.076 0.924
29 H 0.083 0.917
30 H 0.065 0.935
31 H 0.061 0.939
32 H 0.018 0.982
33 H 0.020 0.980
34 H 0.383 0.617
35 H 0.255 0.745
36 H 0.090 0.910
37 H 0.102 0.898
38 H 0.087 0.913
39 H 0.045 0.955
40 H 0.044 0.956
41 H 0.088 0.912
42 H 0.060 0.940
43 H 0.097 0.903
44 H 0.061 0.939
45 H 0.098 0.902
46 H 0.089 0.911
47 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.730 -22.237 14.906 29.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.349 5.349
3 C -0.004 4.004
4 C -0.177 4.177
5 C 0.028 3.972
6 N -0.377 5.377
7 C -0.370 4.370
8 H 0.088 0.912
9 C -0.212 4.212
10 N -0.584 5.584
11 Si 0.740 3.260
12 H -0.213 1.213
13 H -0.217 1.217
14 H -0.213 1.213
15 C 0.299 3.701
16 O -0.413 6.413
17 C -0.175 4.175
18 C -0.058 4.058
19 N -0.264 5.264
20 C -0.116 4.116
21 C -0.013 4.013
22 O -0.306 6.306
23 C -0.013 4.013
24 C -0.111 4.111
25 H 0.073 0.927
26 H 0.095 0.905
27 H 0.090 0.910
28 H 0.095 0.905
29 H 0.102 0.898
30 H 0.084 0.916
31 H 0.080 0.920
32 H 0.036 0.964
33 H 0.038 0.962
34 H 0.217 0.783
35 H 0.065 0.935
36 H 0.108 0.892
37 H 0.121 0.879
38 H 0.105 0.895
39 H 0.063 0.937
40 H 0.062 0.938
41 H 0.106 0.894
42 H 0.078 0.922
43 H 0.115 0.885
44 H 0.079 0.921
45 H 0.116 0.884
46 H 0.107 0.893
47 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -11.316 -22.223 14.668 28.932
hybrid contribution 0.826 1.100 -0.085 1.378
sum -10.490 -21.123 14.584 27.730
Atomic orbital electron populations
1.21826 0.79569 1.03662 1.01633 1.47916 1.07030 1.06412 1.73559
1.21495 0.97459 0.83466 0.98006 1.22047 1.01042 0.98946 0.95680
1.20543 0.96035 0.91896 0.88715 1.42347 1.68350 1.25949 1.01100
1.19206 1.27888 0.98146 0.91792 0.91199 1.24761 1.01769 0.99094
0.95567 1.69654 1.51561 1.38982 0.98172 0.86238 0.79699 0.83244
0.76834 1.21251 1.21681 1.21274 1.20577 0.88050 0.85352 0.76130
1.90733 1.13948 1.87380 1.49284 1.21637 0.99436 0.91725 1.04673
1.21838 0.94417 0.86698 1.02815 1.62185 1.28056 1.02265 1.33877
1.22869 0.98400 0.99267 0.91070 1.22667 0.91617 0.85270 1.01771
1.87988 1.56997 1.43962 1.41648 1.22677 0.94802 0.96670 0.87155
1.22784 0.94781 0.91158 1.02332 0.92662 0.90543 0.90998 0.90546
0.89821 0.91608 0.92026 0.96430 0.96236 0.78325 0.93483 0.89183
0.87948 0.89489 0.93696 0.93806 0.89410 0.92162 0.88485 0.92117
0.88372 0.89255 0.93738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.59 10.25 59.85 0.61 1.20 16
2 N -0.62 -7.26 2.87 -181.57 -0.52 -7.78 16
3 C 0.12 1.63 5.41 -4.04 -0.02 1.61 16
4 C -0.14 -2.38 5.65 -26.73 -0.15 -2.54 16
5 C 0.16 3.30 6.26 -4.04 -0.03 3.27 16
6 N -0.73 -19.61 5.60 -59.91 -0.34 -19.94 16
7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16
8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16
9 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16
10 N -0.93 -29.14 13.06 55.49 0.72 -28.41 16
11 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16
12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
15 C 0.51 6.61 7.67 -10.98 -0.08 6.53 16
16 O -0.54 -9.25 15.56 5.55 0.09 -9.16 16
17 C -0.13 -1.20 4.19 -27.88 -0.12 -1.32 16
18 C 0.07 0.69 4.25 -3.83 -0.02 0.67 16
19 N -0.54 -4.57 4.73 -234.31 -1.11 -5.68 16
20 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16
21 C 0.06 0.43 7.01 37.21 0.26 0.69 16
22 O -0.39 -3.45 10.83 -35.23 -0.38 -3.83 16
23 C 0.06 0.46 7.01 37.21 0.26 0.72 16
24 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16
25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
26 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16
27 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16
28 H 0.08 0.89 8.07 -51.93 -0.42 0.48 16
29 H 0.08 1.28 7.42 -51.93 -0.39 0.89 16
30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16
32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
34 H 0.38 10.75 7.67 -40.82 -0.31 10.44 16
35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
36 H 0.09 0.62 6.48 -51.93 -0.34 0.28 16
37 H 0.10 0.83 7.40 -51.93 -0.38 0.44 16
38 H 0.09 0.97 8.00 -51.93 -0.42 0.56 16
39 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16
40 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
41 H 0.09 0.50 6.38 -51.93 -0.33 0.17 16
42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16
44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16
46 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16
47 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16
LS Contribution 375.57 15.07 5.66 5.66
Total: -1.00 -35.29 375.57 -8.84 -44.13
By element:
Atomic # 1 Polarization: 12.13 SS G_CDS: -8.37 Total: 3.75 kcal
Atomic # 6 Polarization: 2.90 SS G_CDS: 0.43 Total: 3.33 kcal
Atomic # 7 Polarization: -60.58 SS G_CDS: -1.24 Total: -61.82 kcal
Atomic # 8 Polarization: -12.70 SS G_CDS: -0.30 Total: -12.99 kcal
Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -35.29 -8.84 -44.13 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001670283736.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.674 kcal
(2) G-P(sol) polarization free energy of solvation -35.293 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.967 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds