Wall clock time and date at job start Tue Mar 31 2020 03:40:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46499 * 119.99537 * 2 1
4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1
5 5 C 1.52995 * 109.47427 * 179.97438 * 4 3 2
6 6 N 1.46503 * 109.47393 * 180.02562 * 5 4 3
7 7 C 1.36936 * 119.99889 * 180.02562 * 6 5 4
8 8 H 1.07996 * 120.00380 * 359.97438 * 7 6 5
9 9 C 1.38809 * 119.99703 * 180.02562 * 7 6 5
10 10 N 1.31617 * 120.00285 * 359.97438 * 9 7 6
11 11 Si 1.86804 * 120.00110 * 179.97438 * 9 7 6
12 12 H 1.48498 * 109.46931 * 59.99781 * 11 9 7
13 13 H 1.48500 * 109.47159 * 179.97438 * 11 9 7
14 14 H 1.48505 * 109.46990 * 299.99945 * 11 9 7
15 15 C 1.34777 * 120.00264 * 179.97438 * 2 1 3
16 16 O 1.21283 * 119.99750 * 180.02562 * 15 2 1
17 17 C 1.50702 * 119.99928 * 0.28128 * 15 2 1
18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 2
19 19 N 1.46896 * 109.47255 * 179.97438 * 18 17 15
20 20 C 1.47011 * 111.00147 * 293.63572 * 19 18 17
21 21 C 1.53094 * 109.25974 * 177.60789 * 20 19 18
22 22 O 1.43021 * 109.25896 * 56.84664 * 21 20 19
23 23 C 1.43018 * 113.73452 * 301.32819 * 22 21 20
24 24 C 1.47014 * 111.00110 * 169.99532 * 19 18 17
25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3
26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3
27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3
28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1
29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1
30 30 H 1.08999 * 109.47707 * 300.00330 * 4 3 2
31 31 H 1.09005 * 109.46685 * 60.00344 * 4 3 2
32 32 H 1.09006 * 109.47343 * 300.00688 * 5 4 3
33 33 H 1.09005 * 109.46868 * 60.00504 * 5 4 3
34 34 H 0.96998 * 119.99783 * 0.02562 * 6 5 4
35 35 H 0.96997 * 120.00450 * 180.02562 * 10 9 7
36 36 H 1.09004 * 109.46965 * 299.72211 * 17 15 2
37 37 H 1.08994 * 109.46990 * 59.72065 * 17 15 2
38 38 H 1.09004 * 109.47066 * 299.99797 * 18 17 15
39 39 H 1.09000 * 109.47234 * 59.99288 * 18 17 15
40 40 H 1.09000 * 109.50332 * 297.54157 * 20 19 18
41 41 H 1.08997 * 109.50991 * 57.67014 * 20 19 18
42 42 H 1.09001 * 109.50572 * 296.91080 * 21 20 19
43 43 H 1.09001 * 109.54430 * 176.80128 * 21 20 19
44 44 H 1.08991 * 109.50838 * 298.73244 * 23 22 21
45 45 H 1.09003 * 109.53416 * 178.62445 * 23 22 21
46 46 H 1.09003 * 109.50880 * 302.33143 * 24 19 18
47 47 H 1.09008 * 109.50352 * 62.41683 * 24 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.4526 1.7104 -1.4425
5 6 3.2169 3.0357 -1.4426
6 7 3.4606 3.4589 -2.8239
7 6 4.1336 4.6249 -3.0741
8 1 4.4843 5.2328 -2.2533
9 6 4.3640 5.0261 -4.3828
10 7 3.9362 4.2855 -5.3832
11 14 5.2815 6.6171 -4.7243
12 1 6.6391 6.5435 -4.1272
13 1 5.3965 6.8171 -6.1912
14 1 4.5385 7.7551 -4.1257
15 6 2.1390 -1.1672 0.0005
16 8 3.3518 -1.1671 0.0010
17 6 1.3855 -2.4723 -0.0053
18 6 2.3798 -3.6352 -0.0104
19 7 1.6454 -4.9073 -0.0154
20 6 0.9058 -5.0937 1.2413
21 6 0.1095 -6.3993 1.1698
22 8 1.0034 -7.4831 0.9017
23 6 1.7396 -7.3345 -0.3154
24 6 2.5525 -6.0384 -0.2588
25 1 -0.3633 0.0000 1.0277
26 1 -0.3633 0.8899 -0.5139
27 1 -0.3632 -0.8900 -0.5138
28 1 1.6083 2.0285 0.5137
29 1 3.1499 1.1385 0.5139
30 1 3.0417 0.9508 -1.9563
31 1 1.5001 1.8406 -1.9564
32 1 2.6274 3.7952 -0.9289
33 1 4.1693 2.9059 -0.9286
34 1 3.1453 2.9131 -3.5611
35 1 4.0975 4.5656 -6.2977
36 1 0.7588 -2.5340 0.8844
37 1 0.7590 -2.5261 -0.8955
38 1 3.0065 -3.5735 -0.9001
39 1 3.0065 -3.5813 0.8798
40 1 1.6083 -5.1410 2.0734
41 1 0.2219 -4.2579 1.3886
42 1 -0.6298 -6.3314 0.3717
43 1 -0.3958 -6.5709 2.1203
44 1 1.0478 -7.2938 -1.1566
45 1 2.4139 -8.1819 -0.4392
46 1 3.0707 -5.8920 -1.2065
47 1 3.2818 -6.1003 0.5490
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001670283736.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:40:02
Heat of formation + Delta-G solvation = -91.347282 kcal
Electronic energy + Delta-G solvation = -24166.932477 eV
Core-core repulsion = 20577.029143 eV
Total energy + Delta-G solvation = -3589.903333 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 299.200 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.15453 -40.36375 -37.66664 -36.96003 -36.39139 -34.16431 -32.72324 -32.07639
-31.30988 -28.25845 -27.86947 -26.58999 -25.01740 -24.82783 -23.28878 -22.41199
-21.34832 -20.05269 -19.17570 -18.38644 -17.33859 -17.23695 -17.14324 -16.84554
-16.53693 -16.07890 -15.94094 -15.90385 -15.68176 -15.30332 -15.11399 -14.84486
-14.47942 -14.02421 -13.74400 -13.55004 -13.39625 -13.36955 -13.18101 -12.91850
-12.76225 -12.73445 -12.44885 -12.43417 -12.31337 -12.10803 -11.90375 -11.83381
-11.80714 -11.47472 -10.95961 -10.86646 -10.67193 -9.67947 -9.49219 -9.05267
-7.98077 -5.28489 1.45209 1.49647 1.55682 1.60030 1.97051 2.54284
2.71861 2.97335 3.34934 3.64712 3.75033 3.85528 3.92993 3.96673
4.06162 4.08126 4.20268 4.23586 4.31933 4.35556 4.36964 4.47827
4.52046 4.58817 4.63910 4.70529 4.73001 4.74928 4.81767 4.83257
4.87176 4.91032 4.93706 4.99987 5.04224 5.27164 5.28102 5.45514
5.54529 5.83349 5.90487 6.18565 6.23786 6.40212 7.16395 7.29172
8.04214 8.27924 9.25584
Molecular weight = 299.20amu
Principal moments of inertia in cm(-1)
A = 0.029455 B = 0.002137 C = 0.002057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.376548 B =13100.512593 C =13608.993069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.615 5.615
3 C 0.126 3.874
4 C -0.120 4.120
5 C 0.154 3.846
6 N -0.749 5.749
7 C -0.251 4.251
8 H 0.077 0.923
9 C -0.079 4.079
10 N -0.972 5.972
11 Si 0.980 3.020
12 H -0.279 1.279
13 H -0.293 1.293
14 H -0.273 1.273
15 C 0.503 3.497
16 O -0.591 6.591
17 C -0.120 4.120
18 C 0.076 3.924
19 N -0.538 5.538
20 C 0.011 3.989
21 C 0.061 3.939
22 O -0.408 6.408
23 C 0.066 3.934
24 C 0.015 3.985
25 H 0.081 0.919
26 H 0.078 0.922
27 H 0.092 0.908
28 H 0.106 0.894
29 H 0.064 0.936
30 H 0.036 0.964
31 H 0.068 0.932
32 H 0.034 0.966
33 H 0.012 0.988
34 H 0.372 0.628
35 H 0.253 0.747
36 H 0.121 0.879
37 H 0.119 0.881
38 H 0.065 0.935
39 H 0.027 0.973
40 H 0.033 0.967
41 H 0.108 0.892
42 H 0.067 0.933
43 H 0.115 0.885
44 H 0.065 0.935
45 H 0.112 0.888
46 H 0.091 0.909
47 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.674 -22.124 16.091 30.584
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.347 5.347
3 C 0.003 3.997
4 C -0.159 4.159
5 C 0.027 3.973
6 N -0.392 5.392
7 C -0.383 4.383
8 H 0.095 0.905
9 C -0.271 4.271
10 N -0.622 5.622
11 Si 0.808 3.192
12 H -0.205 1.205
13 H -0.219 1.219
14 H -0.199 1.199
15 C 0.292 3.708
16 O -0.472 6.472
17 C -0.160 4.160
18 C -0.053 4.053
19 N -0.263 5.263
20 C -0.117 4.117
21 C -0.015 4.015
22 O -0.327 6.327
23 C -0.011 4.011
24 C -0.113 4.113
25 H 0.099 0.901
26 H 0.097 0.903
27 H 0.111 0.889
28 H 0.124 0.876
29 H 0.083 0.917
30 H 0.054 0.946
31 H 0.087 0.913
32 H 0.052 0.948
33 H 0.030 0.970
34 H 0.204 0.796
35 H 0.061 0.939
36 H 0.139 0.861
37 H 0.137 0.863
38 H 0.084 0.916
39 H 0.045 0.955
40 H 0.051 0.949
41 H 0.126 0.874
42 H 0.085 0.915
43 H 0.133 0.867
44 H 0.084 0.916
45 H 0.130 0.870
46 H 0.109 0.891
47 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -13.310 -22.114 15.904 30.317
hybrid contribution 1.404 1.028 -0.400 1.785
sum -11.906 -21.086 15.504 28.753
Atomic orbital electron populations
1.22146 0.76580 1.04869 1.03693 1.48023 1.08818 1.05243 1.72581
1.21290 0.97786 0.85352 0.95322 1.21849 1.00047 0.96007 0.98037
1.20711 0.96413 0.94141 0.86003 1.42604 1.68249 1.25408 1.02947
1.19650 1.27549 0.98870 0.92229 0.90469 1.25682 1.03206 1.02814
0.95421 1.69823 1.53162 1.40904 0.98318 0.85121 0.78522 0.79220
0.76346 1.20474 1.21932 1.19896 1.21323 0.87659 0.86813 0.74983
1.90712 1.16467 1.88182 1.51800 1.21588 0.98869 0.88732 1.06778
1.21690 0.94535 0.88060 1.00987 1.62231 1.27712 1.01642 1.34702
1.22971 0.98354 1.00472 0.89902 1.22831 0.91312 0.84384 1.02988
1.87961 1.57496 1.44976 1.42270 1.22745 0.94925 0.96563 0.86867
1.22836 0.94836 0.91636 1.02033 0.90100 0.90332 0.88928 0.87598
0.91723 0.94553 0.91347 0.94786 0.96960 0.79648 0.93873 0.86148
0.86281 0.91612 0.95485 0.94896 0.87369 0.91503 0.86711 0.91639
0.87048 0.89078 0.94833
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.81 10.25 127.77 1.31 2.12 16
2 N -0.61 -13.41 2.87 -846.74 -2.43 -15.84 16
3 C 0.13 3.34 5.41 86.38 0.47 3.81 16
4 C -0.12 -4.14 5.65 30.59 0.17 -3.97 16
5 C 0.15 6.50 6.26 86.38 0.54 7.04 16
6 N -0.75 -40.58 5.60 -343.45 -1.92 -42.50 16
7 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16
8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16
9 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16
10 N -0.97 -61.41 13.06 21.65 0.28 -61.13 16
11 Si 0.98 47.23 29.55 68.60 2.03 49.26 16
12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16
13 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16
14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16
15 C 0.50 12.66 7.67 87.66 0.67 13.33 16
16 O -0.59 -21.09 15.56 -3.04 -0.05 -21.14 16
17 C -0.12 -1.91 4.19 29.85 0.13 -1.79 16
18 C 0.08 1.48 4.25 86.30 0.37 1.84 16
19 N -0.54 -8.59 4.73 -895.24 -4.23 -12.82 16
20 C 0.01 0.14 5.44 86.31 0.47 0.60 16
21 C 0.06 0.70 7.01 72.01 0.50 1.21 16
22 O -0.41 -6.75 10.83 -148.98 -1.61 -8.36 16
23 C 0.07 0.88 7.01 72.01 0.50 1.39 16
24 C 0.01 0.23 5.64 86.31 0.49 0.72 16
25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16
26 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16
27 H 0.09 0.74 6.43 -2.39 -0.02 0.72 16
28 H 0.11 2.20 8.07 -2.39 -0.02 2.18 16
29 H 0.06 1.98 7.42 -2.38 -0.02 1.96 16
30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
31 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16
32 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16
33 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16
34 H 0.37 21.41 7.67 -92.71 -0.71 20.70 16
35 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16
36 H 0.12 1.20 6.48 -2.38 -0.02 1.19 16
37 H 0.12 1.57 7.40 -2.39 -0.02 1.55 16
38 H 0.07 1.55 8.00 -2.38 -0.02 1.53 16
39 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16
40 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16
41 H 0.11 0.88 6.38 -2.39 -0.02 0.86 16
42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
43 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16
44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
45 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16
46 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16
47 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16
Total: -1.00 -78.02 375.57 -0.79 -78.80
By element:
Atomic # 1 Polarization: 25.29 SS G_CDS: 0.23 Total: 25.51 kcal
Atomic # 6 Polarization: 1.30 SS G_CDS: 6.93 Total: 8.23 kcal
Atomic # 7 Polarization: -123.99 SS G_CDS: -8.31 Total: -132.30 kcal
Atomic # 8 Polarization: -27.84 SS G_CDS: -1.66 Total: -29.50 kcal
Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal
Total: -78.02 -0.79 -78.80 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001670283736.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.544 kcal
(2) G-P(sol) polarization free energy of solvation -78.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.787 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds