Wall clock time and date at job start Tue Mar 31 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47205 * 2 1 4 4 C 1.53008 * 109.46698 * 119.99433 * 2 1 3 5 5 N 1.46502 * 109.46678 * 175.00053 * 4 2 1 6 6 C 1.36937 * 119.99810 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00395 * 0.02562 * 6 5 4 8 8 C 1.38816 * 119.99936 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00264 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99795 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47419 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46884 * 120.00180 * 10 8 6 13 13 H 1.48501 * 109.47312 * 239.99846 * 10 8 6 14 14 N 1.46496 * 109.47468 * 239.99247 * 2 1 3 15 15 C 1.34774 * 119.99544 * 85.00158 * 14 2 1 16 16 O 1.21279 * 120.00472 * 0.02562 * 15 14 2 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 2 18 18 O 1.42895 * 109.47147 * 180.02562 * 17 15 14 19 19 C 1.42901 * 113.99948 * 179.97438 * 18 17 15 20 20 C 1.53117 * 109.52339 * 269.68050 * 19 18 17 21 21 C 1.53039 * 109.27907 * 182.44013 * 20 19 18 22 22 N 1.46849 * 109.52441 * 59.17772 * 21 20 19 23 23 C 1.46897 * 110.99965 * 174.15975 * 22 21 20 24 24 C 1.46849 * 111.19835 * 298.25993 * 22 21 20 25 25 C 1.53036 * 109.52242 * 61.74011 * 24 22 21 26 26 H 1.09002 * 109.47248 * 300.00356 * 1 2 3 27 27 H 1.08997 * 109.47151 * 60.00842 * 1 2 3 28 28 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47338 * 294.99705 * 4 2 1 30 30 H 1.08997 * 109.47423 * 55.00550 * 4 2 1 31 31 H 0.96998 * 120.00613 * 0.02562 * 5 4 2 32 32 H 0.96998 * 120.00057 * 179.97438 * 9 8 6 33 33 H 0.96994 * 120.00700 * 265.00278 * 14 2 1 34 34 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 35 35 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 36 36 H 1.09005 * 109.52069 * 29.86965 * 19 18 17 37 37 H 1.08996 * 109.50453 * 302.38341 * 20 19 18 38 38 H 1.08997 * 109.50068 * 62.49819 * 20 19 18 39 39 H 1.09003 * 109.46296 * 299.16325 * 21 20 19 40 40 H 1.09003 * 109.46349 * 179.19937 * 21 20 19 41 41 H 1.08994 * 109.46970 * 184.21183 * 23 22 21 42 42 H 1.09003 * 109.47183 * 304.21054 * 23 22 21 43 43 H 1.09001 * 109.47055 * 64.21565 * 23 22 21 44 44 H 1.08998 * 109.45839 * 301.72400 * 24 22 21 45 45 H 1.09001 * 109.45086 * 181.74912 * 24 22 21 46 46 H 1.09004 * 109.50424 * 180.87609 * 25 24 22 47 47 H 1.09004 * 109.53874 * 60.78221 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.4999 -0.8263 1.1907 6 6 4.1837 -1.4378 2.2075 7 1 3.6467 -1.8429 3.0524 8 6 5.5671 -1.5379 2.1517 9 7 6.2217 -1.0446 1.1218 10 14 6.4999 -2.3713 3.5390 11 1 5.5396 -2.8368 4.5716 12 1 7.2508 -3.5345 3.0017 13 1 7.4510 -1.4058 4.1461 14 7 2.0183 -0.6907 -1.1960 15 6 2.1471 -0.0184 -2.3570 16 8 1.8591 1.1584 -2.4115 17 6 2.6490 -0.7291 -3.5876 18 8 2.6978 0.1893 -4.6813 19 6 3.1635 -0.3866 -5.9034 20 6 4.6848 -0.2377 -5.9921 21 6 5.1706 -0.8012 -7.3295 22 7 4.5248 -0.0762 -8.4312 23 6 5.0702 -0.4959 -9.7289 24 6 3.0663 -0.2436 -8.3942 25 6 2.5178 0.3365 -7.0886 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7516 -0.1582 2.1370 30 1 1.6053 -1.7197 1.2954 31 1 3.9824 -0.4622 0.4321 32 1 7.1884 -1.1143 1.0830 33 1 2.2490 -1.6318 -1.1524 34 1 3.6481 -1.1215 -3.3984 35 1 1.9762 -1.5510 -3.8324 36 1 2.8976 -1.4433 -5.9327 37 1 4.9520 0.8167 -5.9229 38 1 5.1524 -0.7865 -5.1746 39 1 4.9153 -1.8591 -7.3921 40 1 6.2518 -0.6839 -7.4019 41 1 4.6289 0.1086 -10.5212 42 1 6.1519 -0.3615 -9.7290 43 1 4.8346 -1.5464 -9.8994 44 1 2.8210 -1.3041 -8.4518 45 1 2.6194 0.2791 -9.2399 46 1 1.4371 0.1981 -7.0545 47 1 2.7502 1.4002 -7.0363 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754288241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:45 Heat of formation + Delta-G solvation = -72.703433 kcal Electronic energy + Delta-G solvation = -24675.572855 eV Core-core repulsion = 21086.477980 eV Total energy + Delta-G solvation = -3589.094876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.83974 -39.19249 -37.23161 -35.97489 -33.62781 -32.71620 -31.45409 -31.13576 -30.06221 -27.77749 -26.17423 -25.63811 -23.41511 -22.78348 -22.60776 -21.05479 -20.22747 -19.94868 -17.37170 -17.18102 -16.56238 -16.12278 -15.81211 -15.50524 -15.34847 -14.93676 -14.76368 -14.24792 -14.12498 -13.68477 -13.40499 -13.35533 -13.04549 -12.94635 -12.70633 -12.35502 -12.26653 -12.20054 -12.08067 -11.88583 -11.58393 -11.40380 -11.30636 -11.06597 -10.91952 -10.85430 -10.64601 -10.45483 -10.04134 -9.76901 -9.56645 -9.43015 -8.94409 -8.67646 -8.64746 -6.98326 -5.80451 -3.10308 2.92989 3.02447 3.40303 3.46210 3.48449 3.61650 4.02907 4.54164 4.55407 4.58052 4.83415 4.84837 4.97634 5.05637 5.06221 5.15478 5.20685 5.25254 5.29121 5.31136 5.36603 5.44011 5.52019 5.52575 5.54650 5.57038 5.66693 5.73743 5.80904 6.02480 6.03851 6.10020 6.14262 6.18809 6.40397 6.47754 6.69920 6.74460 6.76533 6.93424 7.11693 7.66332 7.88481 8.37387 8.58174 9.49284 10.05342 10.40808 11.41903 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.003067 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.820944 B = 9127.415742 C =10770.681055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.242 4.242 7 H 0.071 0.929 8 C -0.013 4.013 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.291 1.291 14 N -0.711 5.711 15 C 0.516 3.484 16 O -0.528 6.528 17 C 0.043 3.957 18 O -0.353 6.353 19 C 0.089 3.911 20 C -0.142 4.142 21 C 0.059 3.941 22 N -0.545 5.545 23 C 0.025 3.975 24 C 0.060 3.940 25 C -0.113 4.113 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.386 0.614 32 H 0.255 0.745 33 H 0.403 0.597 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.033 0.967 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.868 -2.489 -19.280 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.373 4.373 7 H 0.089 0.911 8 C -0.209 4.209 9 N -0.579 5.579 10 Si 0.739 3.261 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.218 1.218 14 N -0.364 5.364 15 C 0.301 3.699 16 O -0.404 6.404 17 C -0.037 4.037 18 O -0.271 6.271 19 C 0.031 3.969 20 C -0.180 4.180 21 C -0.069 4.069 22 N -0.270 5.270 23 C -0.123 4.123 24 C -0.068 4.068 25 C -0.151 4.151 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.238 0.762 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.052 0.948 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.994 -1.020 -19.084 20.716 hybrid contribution 0.901 -2.022 0.466 2.262 sum -7.093 -3.042 -18.618 20.154 Atomic orbital electron populations 1.22104 0.95514 1.01819 1.02193 1.21234 0.93314 0.98044 0.84339 0.89495 1.20990 0.86840 0.96963 0.93591 1.42378 0.99764 1.70295 1.25291 1.19268 0.89442 1.29412 0.99208 0.91069 1.24760 0.96455 1.01585 0.98098 1.69677 1.07189 1.50802 1.30213 0.86116 0.79906 0.78711 0.81414 1.20563 1.21890 1.21839 1.45867 1.67040 1.14403 1.09055 1.20113 0.78105 0.87450 0.84244 1.90695 1.49205 1.15636 1.84874 1.22268 1.01880 0.92379 0.87147 1.88052 1.86572 1.35279 1.17205 1.22176 0.93512 0.96545 0.84705 1.22130 0.95784 1.03695 0.96428 1.22064 0.99333 0.95018 0.90486 1.61929 1.04578 1.57423 1.03081 1.22348 1.00750 0.98307 0.90889 1.22064 0.87700 0.98913 0.98149 1.21636 0.99845 1.01951 0.91694 0.91629 0.92410 0.92601 0.94817 0.95758 0.77988 0.93525 0.76192 0.89949 0.90737 0.92487 0.89771 0.90815 0.94852 0.90225 0.91303 0.91250 0.95744 0.94841 0.90157 0.90729 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.15 0.35 -1.83 16 2 C 0.14 2.30 2.73 -67.93 -0.19 2.12 16 3 H 0.09 1.70 7.58 -51.93 -0.39 1.30 16 4 C 0.14 2.79 5.82 -4.04 -0.02 2.77 16 5 N -0.73 -18.07 5.43 -59.90 -0.33 -18.40 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 8 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 10 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 N -0.71 -11.45 4.52 -53.81 -0.24 -11.69 16 15 C 0.52 8.84 7.87 -10.98 -0.09 8.75 16 16 O -0.53 -11.13 16.16 -14.35 -0.23 -11.36 16 17 C 0.04 0.59 6.23 36.01 0.22 0.81 16 18 O -0.35 -5.27 9.53 -55.14 -0.53 -5.79 16 19 C 0.09 1.01 2.68 -26.61 -0.07 0.94 16 20 C -0.14 -1.59 5.72 -26.65 -0.15 -1.74 16 21 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 22 N -0.55 -5.09 4.91 -242.96 -1.19 -6.28 16 23 C 0.03 0.18 9.59 60.06 0.58 0.76 16 24 C 0.06 0.51 5.46 -3.83 -0.02 0.49 16 25 C -0.11 -1.15 5.75 -26.65 -0.15 -1.30 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.39 10.19 7.33 -40.82 -0.30 9.90 16 32 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.40 5.94 8.60 -40.82 -0.35 5.59 16 34 H 0.08 1.06 7.96 -51.93 -0.41 0.65 16 35 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.06 0.56 7.79 -51.93 -0.40 0.16 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 43 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -33.30 380.22 -9.47 -42.77 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -8.58 Total: 9.97 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 0.19 Total: 5.04 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -1.04 Total: -63.44 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.76 Total: -17.15 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.30 -9.47 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754288241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.931 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds