Wall clock time and date at job start Tue Mar 31 2020 03:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47041 * 2 1 4 4 C 1.46909 * 110.99869 * 293.95583 * 3 2 1 5 5 C 1.46898 * 111.00221 * 170.00114 * 3 2 1 6 6 C 1.53000 * 109.47109 * 189.99905 * 5 3 2 7 7 C 1.50705 * 109.47016 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99794 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99683 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46905 * 179.97438 * 10 9 7 12 12 O 1.42903 * 110.91674 * 67.44791 * 11 10 9 13 13 C 1.55155 * 111.00233 * 191.34860 * 11 10 9 14 14 C 1.54337 * 103.02124 * 153.38273 * 13 11 10 15 15 N 1.47022 * 107.26372 * 338.14006 * 14 13 11 16 16 C 1.36932 * 125.64698 * 178.85099 * 15 14 13 17 17 H 1.08004 * 119.99606 * 169.55960 * 16 15 14 18 18 C 1.38807 * 120.00167 * 349.56117 * 16 15 14 19 19 N 1.31621 * 120.00288 * 152.80040 * 18 16 15 20 20 Si 1.86799 * 120.00074 * 332.79751 * 18 16 15 21 21 H 1.48505 * 109.46890 * 85.29216 * 20 18 16 22 22 H 1.48497 * 109.47733 * 205.29476 * 20 18 16 23 23 H 1.48506 * 109.47292 * 325.29549 * 20 18 16 24 24 C 1.47432 * 108.70275 * 358.58536 * 15 14 13 25 25 H 1.09002 * 109.47136 * 299.99946 * 1 2 3 26 26 H 1.08997 * 109.47046 * 60.00125 * 1 2 3 27 27 H 1.09003 * 109.46542 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47136 * 240.00054 * 2 1 3 29 29 H 1.08997 * 109.47046 * 119.99875 * 2 1 3 30 30 H 1.08993 * 109.46994 * 296.04559 * 4 3 2 31 31 H 1.08999 * 109.46804 * 56.04662 * 4 3 2 32 32 H 1.09002 * 109.47049 * 176.04564 * 4 3 2 33 33 H 1.09007 * 109.46632 * 70.00236 * 5 3 2 34 34 H 1.08991 * 109.47081 * 310.00203 * 5 3 2 35 35 H 1.08999 * 109.47223 * 59.99770 * 6 5 3 36 36 H 1.09004 * 109.47433 * 299.99780 * 6 5 3 37 37 H 0.96998 * 119.99873 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47024 * 59.99387 * 10 9 7 39 39 H 1.09004 * 109.46720 * 299.99713 * 10 9 7 40 40 H 0.96703 * 113.99886 * 297.55042 * 12 11 10 41 41 H 1.09008 * 110.71923 * 271.94001 * 13 11 10 42 42 H 1.08994 * 110.72383 * 35.03408 * 13 11 10 43 43 H 1.08997 * 109.99116 * 218.66767 * 14 13 11 44 44 H 1.09002 * 109.77782 * 97.49100 * 14 13 11 45 45 H 0.97001 * 119.99981 * 5.04665 * 19 18 16 46 46 H 1.08995 * 110.36373 * 143.19582 * 24 15 14 47 47 H 1.09002 * 110.36426 * 265.51652 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6701 2.0670 -1.2534 5 6 3.4685 1.4312 0.2381 6 6 3.8998 2.8792 0.4790 7 6 5.3863 2.9267 0.7227 8 8 6.0365 1.9030 0.7058 9 7 5.9928 4.1066 0.9604 10 6 7.4378 4.1526 1.1978 11 6 7.8691 5.6007 1.4386 12 8 7.3343 6.0945 2.6683 13 6 9.4148 5.7323 1.4117 14 6 9.6316 7.1975 0.9781 15 7 8.4067 7.6355 0.2929 16 6 8.1851 8.8833 -0.2257 17 1 7.3265 9.0614 -0.8561 18 6 9.0640 9.9193 0.0588 19 7 9.2032 10.9161 -0.7894 20 14 10.0494 9.8990 1.6457 21 1 11.2867 9.1014 1.4498 22 1 10.4111 11.2893 2.0218 23 1 9.2339 9.2900 2.7270 24 6 7.4590 6.5069 0.2511 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1768 1.5791 -2.0860 31 1 0.5919 2.0179 -1.4052 32 1 1.9823 3.1099 -1.1988 33 1 3.9925 1.0360 -0.6323 34 1 3.7122 0.8291 1.1133 35 1 3.3758 3.2745 1.3492 36 1 3.6561 3.4814 -0.3963 37 1 5.4727 4.9252 0.9742 38 1 7.9617 3.7577 0.3274 39 1 7.6815 3.5502 2.0729 40 1 6.3680 6.1232 2.6937 41 1 9.8343 5.5546 2.4020 42 1 9.8476 5.0473 0.6827 43 1 10.4805 7.2631 0.2977 44 1 9.8081 7.8196 1.8556 45 1 8.6394 10.9648 -1.5772 46 1 6.4376 6.8642 0.3816 47 1 7.5552 5.9656 -0.6901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754760064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:47 Heat of formation + Delta-G solvation = -82.319287 kcal Electronic energy + Delta-G solvation = -24882.854091 eV Core-core repulsion = 21293.342241 eV Total energy + Delta-G solvation = -3589.511850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -41.19075 -40.10110 -38.65753 -36.91992 -35.35584 -34.36251 -33.39965 -31.73186 -30.62997 -29.83196 -27.94225 -27.13017 -25.06593 -23.63740 -22.72232 -21.80088 -21.45627 -21.20146 -19.52515 -18.67082 -17.82471 -17.19923 -17.06077 -16.77745 -16.38831 -16.25449 -15.97019 -15.75329 -15.30271 -15.16899 -14.95459 -14.74877 -14.48832 -14.26156 -13.78222 -13.40708 -13.31810 -13.11431 -13.06711 -13.03735 -12.80747 -12.68436 -12.63602 -12.29601 -12.23881 -11.94900 -11.85390 -11.75753 -11.66580 -11.16947 -11.07501 -10.87857 -10.57123 -10.17554 -9.36788 -9.16962 -8.64453 -5.42493 1.39717 1.52004 1.60559 1.71679 2.04699 2.49946 2.97059 2.98445 3.15255 3.25394 3.53215 3.70098 3.79841 3.82939 3.92768 4.11687 4.16334 4.25895 4.30216 4.38328 4.54366 4.56093 4.59300 4.61801 4.62438 4.70852 4.74983 4.82616 4.89019 4.90543 4.93290 5.00514 5.02843 5.05125 5.13039 5.13500 5.33474 5.37030 5.55890 6.02500 6.07537 6.09905 6.44672 6.74642 6.81934 7.17950 7.47071 8.11223 8.84254 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.002731 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.014754 B =10250.656797 C =10824.362401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.548 5.548 4 C 0.013 3.987 5 C 0.075 3.925 6 C -0.129 4.129 7 C 0.516 3.484 8 O -0.584 6.584 9 N -0.720 5.720 10 C 0.118 3.882 11 C 0.118 3.882 12 O -0.553 6.553 13 C -0.108 4.108 14 C 0.108 3.892 15 N -0.625 5.625 16 C -0.318 4.318 17 H 0.050 0.950 18 C -0.075 4.075 19 N -0.953 5.953 20 Si 1.110 2.890 21 H -0.274 1.274 22 H -0.307 1.307 23 H -0.279 1.279 24 C 0.110 3.890 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.021 0.979 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.412 0.588 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.386 0.614 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.029 0.971 44 H 0.021 0.979 45 H 0.250 0.750 46 H 0.053 0.947 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.205 -21.875 4.025 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.273 5.273 4 C -0.135 4.135 5 C -0.053 4.053 6 C -0.168 4.168 7 C 0.304 3.696 8 O -0.464 6.464 9 N -0.373 5.373 10 C -0.006 4.006 11 C 0.076 3.924 12 O -0.360 6.360 13 C -0.146 4.146 14 C -0.017 4.017 15 N -0.352 5.352 16 C -0.447 4.447 17 H 0.068 0.932 18 C -0.270 4.270 19 N -0.596 5.596 20 Si 0.939 3.061 21 H -0.201 1.201 22 H -0.236 1.236 23 H -0.206 1.206 24 C -0.015 4.015 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.236 0.764 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.221 -21.433 5.341 25.743 hybrid contribution -1.504 -0.300 -2.128 2.623 sum -14.726 -21.733 3.213 26.448 Atomic orbital electron populations 1.21773 0.93621 1.02311 1.02451 1.22158 0.97045 0.88184 1.00796 1.62056 1.12913 1.16747 1.35550 1.22581 1.02205 0.99629 0.89041 1.21705 0.87148 0.95745 1.00740 1.21611 0.89826 0.99182 1.06228 1.21089 0.91037 0.82565 0.74909 1.90695 1.68040 1.34851 1.52819 1.45933 1.08865 1.10017 1.72466 1.21735 0.81405 0.95114 1.02388 1.22447 0.95000 0.90616 0.84352 1.86573 1.26632 1.87699 1.35128 1.22608 0.93070 0.95068 1.03835 1.21783 0.89847 0.95313 0.94723 1.44765 1.13626 1.08542 1.68265 1.19907 1.12434 0.86942 1.25377 0.93227 1.26898 1.01433 0.93537 1.05115 1.71040 1.37599 1.38399 1.12601 0.83156 0.75575 0.73811 0.73559 1.20073 1.23617 1.20582 1.22424 0.93901 0.88757 0.96415 0.92114 0.92363 0.91225 0.95161 0.90781 0.95997 0.90069 0.90370 0.95589 0.90982 0.86025 0.87157 0.75171 0.90550 0.90211 0.76447 0.88308 0.87388 0.95262 0.96121 0.94090 0.92825 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.84 71.98 0.71 -0.79 16 2 C 0.05 0.62 5.68 86.30 0.49 1.11 16 3 N -0.55 -8.25 4.76 -922.44 -4.39 -12.64 16 4 C 0.01 0.17 9.13 127.69 1.17 1.33 16 5 C 0.08 1.31 4.25 86.30 0.37 1.67 16 6 C -0.13 -1.89 5.62 29.85 0.17 -1.73 16 7 C 0.52 10.94 7.83 87.66 0.69 11.62 16 8 O -0.58 -17.17 15.98 -3.04 -0.05 -17.22 16 9 N -0.72 -13.76 5.19 -463.04 -2.40 -16.17 16 10 C 0.12 2.71 4.97 86.38 0.43 3.14 16 11 C 0.12 3.31 0.95 -9.40 -0.01 3.30 16 12 O -0.55 -15.82 13.18 -148.98 -1.96 -17.79 16 13 C -0.11 -3.27 6.15 31.79 0.20 -3.07 16 14 C 0.11 4.56 5.00 86.73 0.43 4.99 16 15 N -0.62 -29.59 3.28 -691.96 -2.27 -31.87 16 16 C -0.32 -18.25 10.43 84.03 0.88 -17.37 16 17 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 18 C -0.08 -4.50 5.43 84.86 0.46 -4.04 16 19 N -0.95 -61.18 13.70 21.65 0.30 -60.88 16 20 Si 1.11 55.43 24.69 68.60 1.69 57.13 16 21 H -0.27 -12.64 6.80 99.48 0.68 -11.97 16 22 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 23 H -0.28 -13.32 6.75 99.48 0.67 -12.64 16 24 C 0.11 3.88 5.74 86.85 0.50 4.38 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.57 6.47 -2.39 -0.02 0.56 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.03 0.42 8.12 -2.39 -0.02 0.40 16 29 H 0.07 1.00 7.93 -2.39 -0.02 0.98 16 30 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.87 6.30 -2.39 -0.02 0.86 16 32 H 0.08 0.87 6.47 -2.39 -0.02 0.86 16 33 H 0.03 0.53 8.08 -2.38 -0.02 0.51 16 34 H 0.07 1.39 7.89 -2.39 -0.02 1.37 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 1.32 6.55 -2.39 -0.02 1.30 16 37 H 0.41 6.17 7.32 -92.71 -0.68 5.49 16 38 H 0.08 1.83 8.00 -2.39 -0.02 1.81 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.39 7.90 8.58 -74.06 -0.64 7.27 16 41 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 42 H 0.11 2.74 7.93 -2.39 -0.02 2.72 16 43 H 0.03 1.30 7.97 -2.39 -0.02 1.28 16 44 H 0.02 0.95 3.59 -2.39 -0.01 0.94 16 45 H 0.25 16.01 8.73 -92.71 -0.81 15.20 16 46 H 0.05 1.77 7.80 -2.39 -0.02 1.75 16 47 H 0.04 1.34 8.04 -2.39 -0.02 1.32 16 Total: -1.00 -76.26 365.16 -3.07 -79.33 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.45 Total: 15.56 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.47 Total: 4.55 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -8.77 Total: -121.56 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -2.01 Total: -35.00 kcal Atomic # 14 Polarization: 55.43 SS G_CDS: 1.69 Total: 57.13 kcal Total: -76.26 -3.07 -79.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.992 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds