Wall clock time and date at job start Tue Mar 31 2020 04:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30177 * 126.80559 * 2 1 4 4 O 1.20913 * 111.60656 * 179.97438 * 3 2 1 5 5 C 1.34045 * 111.56690 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.77362 * 180.02562 * 5 4 3 7 7 C 1.35445 * 106.44645 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00537 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47254 * 90.00031 * 8 7 5 10 10 O 1.21284 * 120.00185 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00222 * 179.97438 * 9 8 7 12 12 C 1.39242 * 120.00410 * 175.70847 * 11 9 8 13 13 C 1.39477 * 119.83389 * 215.01593 * 12 11 9 14 14 C 1.36375 * 120.16485 * 179.71526 * 13 12 11 15 15 C 1.40864 * 119.83001 * 0.57541 * 14 13 12 16 16 C 1.41154 * 120.16679 * 179.67498 * 15 14 13 17 17 H 1.07997 * 120.00654 * 214.80476 * 16 15 14 18 18 C 1.39909 * 119.99822 * 34.80333 * 16 15 14 19 19 N 1.30874 * 120.00023 * 355.55901 * 18 16 15 20 20 Si 1.86798 * 120.00219 * 175.56010 * 18 16 15 21 21 H 1.48506 * 109.46926 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47472 * 119.99717 * 20 18 16 23 23 H 1.48498 * 109.47254 * 240.00389 * 20 18 16 24 24 C 1.40867 * 119.67225 * 359.70071 * 15 14 13 25 25 C 1.36375 * 119.82714 * 359.97438 * 24 15 14 26 26 H 1.09004 * 109.46828 * 90.02726 * 1 2 3 27 27 H 1.08998 * 109.47051 * 210.02728 * 1 2 3 28 28 H 1.08999 * 109.46909 * 330.02646 * 1 2 3 29 29 H 1.08996 * 109.47220 * 359.97438 * 6 5 4 30 30 H 1.09000 * 109.46776 * 119.98062 * 6 5 4 31 31 H 1.08994 * 109.46887 * 239.97539 * 6 5 4 32 32 H 1.09003 * 109.47008 * 210.00314 * 8 7 5 33 33 H 1.09003 * 109.47112 * 329.99887 * 8 7 5 34 34 H 0.97005 * 120.00177 * 355.70717 * 11 9 8 35 35 H 1.07994 * 119.91867 * 359.97438 * 13 12 11 36 36 H 1.08009 * 120.08422 * 180.25391 * 14 13 12 37 37 H 0.96997 * 120.00144 * 179.97438 * 19 18 16 38 38 H 1.07998 * 120.08641 * 179.97438 * 24 15 14 39 39 H 1.07998 * 119.91593 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6069 0.0015 6 6 4.9022 -1.3696 0.0029 7 6 2.3539 -1.1321 0.0010 8 6 1.9590 -2.5864 0.0011 9 6 1.8267 -3.0709 1.4219 10 8 2.0332 -2.3102 2.3437 11 7 1.4788 -4.3494 1.6683 12 6 1.4434 -4.8214 2.9778 13 6 1.8106 -6.1390 3.2507 14 6 1.7839 -6.6066 4.5315 15 6 1.3727 -5.7587 5.5785 16 6 1.3359 -6.2373 6.9059 17 1 0.5691 -5.8921 7.5835 18 6 2.2929 -7.1592 7.3439 19 7 3.1687 -7.6437 6.5008 20 14 2.3206 -7.6984 9.1322 21 1 1.2345 -7.0089 9.8740 22 1 2.1183 -9.1675 9.2095 23 1 3.6315 -7.3468 9.7350 24 6 0.9979 -4.4309 5.2943 25 6 1.0360 -3.9756 4.0094 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 5.7357 -0.6672 0.0025 30 1 4.9550 -1.9958 0.8935 31 1 4.9559 -1.9975 -0.8864 32 1 1.0052 -2.7040 -0.5133 33 1 2.7230 -3.1704 -0.5122 34 1 1.2531 -4.9410 0.9334 35 1 2.1207 -6.7894 2.4462 36 1 2.0725 -7.6260 4.7418 37 1 3.8325 -8.2825 6.8045 38 1 0.6811 -3.7752 6.0918 39 1 0.7493 -2.9578 3.7899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012806422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:11 Heat of formation + Delta-G solvation = 37.496045 kcal Electronic energy + Delta-G solvation = -23309.696767 eV Core-core repulsion = 19799.137662 eV Total energy + Delta-G solvation = -3510.559104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -44.88291 -39.72280 -37.37373 -35.31043 -34.40463 -33.65229 -32.95086 -30.31456 -29.58215 -28.77697 -28.58214 -27.15972 -24.88736 -22.41374 -21.44189 -20.76391 -20.19294 -19.57055 -17.73068 -17.35709 -17.10957 -16.60888 -16.22804 -15.26329 -15.13222 -14.36232 -14.03973 -13.78901 -13.68069 -13.52061 -13.22331 -13.12933 -12.91379 -12.69160 -12.61975 -12.39630 -12.16815 -12.00403 -11.72043 -11.38724 -11.18376 -11.00487 -10.91491 -10.75110 -10.06481 -9.85774 -9.51584 -9.47098 -9.27541 -9.02019 -8.87645 -7.57491 -6.89039 -6.64102 -4.36544 1.47597 2.17880 2.51850 2.98756 3.06286 3.08963 3.10374 3.14259 3.31394 3.76270 3.96784 4.16647 4.42705 4.66508 4.69026 4.83840 5.14198 5.19204 5.23277 5.33848 5.36914 5.39857 5.58842 5.63881 5.67769 5.70459 5.91223 6.12248 6.16302 6.42210 6.72532 6.89321 7.04704 7.18212 7.27493 7.61435 7.71865 7.84690 8.04379 8.23002 8.29398 8.30535 8.60240 8.72151 8.90824 8.97716 10.27008 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.002996 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.439878 B = 9344.478459 C = 9438.288605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.017 4.017 6 C -0.076 4.076 7 C -0.181 4.181 8 C -0.061 4.061 9 C 0.497 3.503 10 O -0.522 6.522 11 N -0.652 5.652 12 C 0.003 3.997 13 C -0.121 4.121 14 C -0.141 4.141 15 C 0.100 3.900 16 C -0.461 4.461 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.812 5.812 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.206 4.206 25 C -0.085 4.085 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.396 0.604 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.277 0.723 38 H 0.095 0.905 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 5.620 -14.918 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 N -0.078 5.078 4 O 0.030 5.970 5 C -0.080 4.080 6 C -0.133 4.133 7 C -0.185 4.185 8 C -0.102 4.102 9 C 0.283 3.717 10 O -0.397 6.397 11 N -0.295 5.295 12 C -0.089 4.089 13 C -0.141 4.141 14 C -0.161 4.161 15 C 0.098 3.902 16 C -0.492 4.492 17 H 0.094 0.906 18 C -0.145 4.145 19 N -0.439 5.439 20 Si 0.740 3.260 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.226 4.226 25 C -0.105 4.105 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.229 0.771 35 H 0.109 0.891 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.022 7.346 -14.265 16.045 hybrid contribution 0.032 -1.366 0.473 1.446 sum 0.054 5.980 -13.791 15.032 Atomic orbital electron populations 1.20155 0.86172 1.04074 1.02893 1.23333 0.98764 0.88414 1.02005 1.73780 0.89269 1.23918 1.20838 1.84769 1.21672 1.22430 1.68090 1.24162 0.98125 0.83773 1.01984 1.20364 0.90019 0.98701 1.04217 1.20209 0.91864 0.96003 1.10432 1.19882 1.04112 0.90433 0.95746 1.20409 0.77995 0.82593 0.90674 1.90717 1.48917 1.54424 1.45677 1.42990 1.66976 1.11538 1.08033 1.17256 1.13846 0.95051 0.82760 1.20309 1.02775 0.93822 0.97183 1.21193 1.03837 1.00929 0.90189 1.17727 0.89139 0.89998 0.93371 1.19546 1.11832 1.21128 0.96663 0.90567 1.25879 0.94567 0.94192 0.99902 1.69766 1.14166 1.24330 1.35650 0.86149 0.79059 0.78727 0.82061 1.18582 1.19983 1.19976 1.20815 1.10883 0.95864 0.95020 1.20390 0.99344 0.98217 0.92566 0.90316 0.90061 0.90506 0.89895 0.88833 0.89282 0.87889 0.87831 0.77091 0.89074 0.85033 0.91202 0.88656 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.39 36.01 0.37 -0.44 16 2 C 0.03 0.47 7.33 -82.10 -0.60 -0.13 16 3 N -0.37 -5.71 12.07 33.42 0.40 -5.31 16 4 O 0.09 1.36 11.20 17.17 0.19 1.55 16 5 C -0.02 -0.22 7.49 -35.30 -0.26 -0.48 16 6 C -0.08 -0.68 10.23 36.01 0.37 -0.31 16 7 C -0.18 -2.38 4.81 -104.42 -0.50 -2.88 16 8 C -0.06 -0.67 6.03 -29.04 -0.18 -0.85 16 9 C 0.50 8.00 7.65 -10.99 -0.08 7.92 16 10 O -0.52 -10.93 13.45 5.55 0.07 -10.86 16 11 N -0.65 -10.56 5.30 -9.74 -0.05 -10.61 16 12 C 0.00 0.07 6.31 -83.57 -0.53 -0.46 16 13 C -0.12 -2.66 9.90 -39.79 -0.39 -3.06 16 14 C -0.14 -3.57 8.61 -39.26 -0.34 -3.91 16 15 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 16 C -0.46 -12.24 9.03 -37.85 -0.34 -12.59 16 17 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 18 C 0.07 1.75 5.42 -17.33 -0.09 1.65 16 19 N -0.81 -20.90 10.60 55.55 0.59 -20.31 16 20 Si 0.92 18.90 29.56 -169.99 -5.03 13.88 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.21 -5.19 9.74 -39.26 -0.38 -5.58 16 25 C -0.09 -2.02 8.61 -39.79 -0.34 -2.36 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.40 4.76 8.82 -40.82 -0.36 4.40 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.13 3.43 6.13 -52.48 -0.32 3.11 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 38 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.11 2.50 6.22 -52.49 -0.33 2.18 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -32.48 339.10 -7.38 -39.86 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.78 Total: 8.09 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -3.90 Total: -21.40 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.94 Total: -36.23 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.27 Total: -9.31 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.48 -7.38 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012806422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.359 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds