Wall clock time and date at job start Tue Mar 31 2020 03:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35725 * 116.99599 * 2 1 4 4 C 1.36382 * 119.65974 * 0.02562 * 3 2 1 5 5 C 1.40458 * 120.00013 * 179.97438 * 4 3 2 6 6 C 1.40593 * 120.98065 * 180.02562 * 5 4 3 7 7 C 1.36093 * 119.72250 * 180.02562 * 6 5 4 8 8 C 1.39404 * 121.02405 * 359.97438 * 7 6 5 9 9 C 1.36061 * 120.97792 * 359.97327 * 8 7 6 10 10 C 1.40712 * 119.67657 * 0.02720 * 9 8 7 11 11 C 1.40175 * 121.04241 * 179.97438 * 10 9 8 12 12 C 1.38620 * 119.52126 * 180.30285 * 11 10 9 13 13 C 1.47454 * 119.79235 * 179.72116 * 12 11 10 14 14 O 1.21502 * 119.99820 * 180.02562 * 13 12 11 15 15 O 1.34753 * 119.99941 * 359.97438 * 13 12 11 16 16 C 1.45201 * 116.99699 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46649 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46605 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00143 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99771 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99992 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99887 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46952 * 89.99821 * 22 20 18 24 24 H 1.48499 * 109.47108 * 209.99955 * 22 20 18 25 25 H 1.48494 * 109.47261 * 330.00104 * 22 20 18 26 26 H 1.09005 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47252 * 299.99873 * 1 2 3 28 28 H 1.08995 * 109.47334 * 59.99826 * 1 2 3 29 29 H 1.08006 * 119.99661 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.13508 * 0.03922 * 6 5 4 31 31 H 1.08003 * 119.48877 * 180.02562 * 7 6 5 32 32 H 1.08003 * 119.51099 * 180.02562 * 8 7 6 33 33 H 1.07993 * 120.16167 * 180.02562 * 9 8 7 34 34 H 1.08002 * 120.23415 * 0.02562 * 11 10 9 35 35 H 1.08996 * 109.47752 * 300.00366 * 16 15 13 36 36 H 1.09002 * 109.46758 * 60.00537 * 16 15 13 37 37 H 1.08999 * 109.46939 * 299.99696 * 17 16 15 38 38 H 1.08991 * 109.47023 * 60.00231 * 17 16 15 39 39 H 0.97007 * 119.99973 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2955 2.3487 0.0005 5 6 1.9256 3.6040 0.0011 6 6 1.1730 4.7915 0.0022 7 6 1.8102 5.9941 0.0022 8 6 3.2021 6.0697 0.0016 9 6 3.9647 4.9429 0.0016 10 6 3.3427 3.6807 0.0016 11 6 4.1004 2.5015 0.0011 12 6 3.4549 1.2748 -0.0053 13 6 4.2461 0.0305 -0.0121 14 8 3.6841 -1.0467 -0.0182 15 8 5.5924 0.0882 -0.0127 16 6 6.3063 -1.1762 -0.0190 17 6 7.8132 -0.9110 -0.0180 18 6 8.5541 -2.2233 -0.0252 19 1 8.0052 -3.1533 -0.0304 20 6 9.9328 -2.2365 -0.0262 21 7 10.5794 -3.3816 -0.0319 22 14 10.8823 -0.6277 -0.0194 23 1 11.1348 -0.2079 1.3825 24 1 12.1776 -0.8144 -0.7212 25 1 10.0892 0.4180 -0.7140 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2173 2.2856 0.0005 30 1 0.0939 4.7495 0.0032 31 1 1.2283 6.9040 0.0034 32 1 3.6824 7.0371 0.0020 33 1 5.0421 5.0169 0.0016 34 1 5.1794 2.5483 0.0011 35 1 6.0381 -1.7494 0.8684 36 1 6.0370 -1.7410 -0.9115 37 1 8.0817 -0.3377 -0.9053 38 1 8.0821 -0.3463 0.8746 39 1 11.5495 -3.3909 -0.0323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021712443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:05 Heat of formation + Delta-G solvation = -82.306912 kcal Electronic energy + Delta-G solvation = -23060.390314 eV Core-core repulsion = 19512.343413 eV Total energy + Delta-G solvation = -3548.046902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.119 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.06953 -39.60378 -38.99883 -36.09448 -35.68583 -33.30314 -32.90560 -31.01856 -30.44314 -29.18352 -27.60785 -25.61577 -24.24317 -23.00837 -22.15400 -21.19641 -20.54972 -18.60920 -17.98089 -17.38469 -16.93973 -16.17565 -16.16774 -15.66932 -15.59588 -15.26152 -14.88756 -14.67088 -14.18831 -13.82331 -13.69471 -13.36787 -13.29660 -12.97882 -12.56151 -12.41909 -12.08345 -11.99249 -11.53683 -11.45789 -11.23951 -11.20665 -10.76027 -10.65656 -10.49487 -10.16072 -9.93763 -9.85404 -9.65410 -9.32807 -8.64873 -8.60698 -8.01050 -6.11273 -4.12239 0.06516 0.65912 1.69679 2.31265 3.03002 3.07855 3.18899 3.28861 3.36093 3.40216 3.86291 4.26750 4.39865 4.52310 4.59993 4.72163 4.76603 4.86528 4.94577 4.97823 5.04561 5.17694 5.22323 5.31366 5.37893 5.52233 5.61256 5.71479 5.83611 5.96487 6.02375 6.02736 6.21464 6.23046 6.36774 6.49058 6.62401 6.80467 7.15768 7.22184 7.24819 7.64502 8.21618 8.41829 8.90908 9.48287 11.01398 Molecular weight = 300.12amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.003495 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.373136 B = 8010.283783 C = 9662.897461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.283 6.283 3 C 0.187 3.813 4 C -0.232 4.232 5 C 0.012 3.988 6 C -0.129 4.129 7 C -0.093 4.093 8 C -0.140 4.140 9 C -0.076 4.076 10 C -0.101 4.101 11 C 0.003 3.997 12 C -0.138 4.138 13 C 0.498 3.502 14 O -0.489 6.489 15 O -0.361 6.361 16 C 0.085 3.915 17 C -0.009 4.009 18 C -0.527 4.527 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.263 1.263 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.139 0.861 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.156 0.844 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.395 19.782 0.078 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.193 6.193 3 C 0.139 3.861 4 C -0.251 4.251 5 C 0.012 3.988 6 C -0.147 4.147 7 C -0.111 4.111 8 C -0.158 4.158 9 C -0.094 4.094 10 C -0.102 4.102 11 C -0.015 4.015 12 C -0.140 4.140 13 C 0.342 3.658 14 O -0.377 6.377 15 O -0.278 6.278 16 C 0.012 3.988 17 C -0.047 4.047 18 C -0.565 4.565 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.708 3.292 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.187 1.187 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.174 0.826 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.261 19.115 0.072 28.590 hybrid contribution 0.299 0.692 0.025 0.754 sum -20.962 19.807 0.096 28.840 Atomic orbital electron populations 1.23169 0.78634 1.04389 1.01168 1.86406 1.20894 1.25393 1.86656 1.18505 0.90353 0.85160 0.92043 1.20819 1.00044 0.90816 1.13391 1.17900 0.92257 0.93251 0.95432 1.20965 0.99640 0.91534 1.02552 1.20933 0.94768 0.97791 0.97583 1.20824 0.93883 0.98680 1.02420 1.21143 1.00262 0.91148 0.96809 1.18036 0.92648 0.93792 1.05691 1.21775 1.00926 0.89508 0.89329 1.18658 0.89883 0.92534 1.12914 1.20739 0.82063 0.88735 0.74283 1.90861 1.72090 1.30270 1.44512 1.86505 1.18344 1.39482 1.83483 1.23383 0.92844 0.80670 1.01887 1.19628 0.88344 0.98834 0.97845 1.20852 0.91566 0.91789 1.52251 0.90624 1.24939 0.97499 0.96440 0.94165 1.69897 1.08256 1.25220 1.50196 0.86747 0.79392 0.84335 0.78714 1.20057 1.21197 1.18744 0.87868 0.92545 0.92535 0.84365 0.85559 0.85901 0.85770 0.84940 0.82632 0.91653 0.91624 0.95372 0.95795 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.80 101.05 0.99 1.18 16 2 O -0.28 -4.05 8.50 -41.02 -0.35 -4.40 16 3 C 0.19 2.59 6.66 -39.16 -0.26 2.33 16 4 C -0.23 -2.53 8.71 -39.41 -0.34 -2.87 16 5 C 0.01 0.13 5.75 -106.77 -0.61 -0.49 16 6 C -0.13 -1.09 9.76 -39.46 -0.38 -1.47 16 7 C -0.09 -0.70 9.95 -39.92 -0.40 -1.09 16 8 C -0.14 -1.11 9.95 -39.93 -0.40 -1.50 16 9 C -0.08 -0.70 9.76 -39.43 -0.38 -1.09 16 10 C -0.10 -1.15 5.74 -106.83 -0.61 -1.77 16 11 C 0.00 0.04 9.35 -38.71 -0.36 -0.33 16 12 C -0.14 -2.12 5.88 -104.91 -0.62 -2.73 16 13 C 0.50 9.38 7.88 34.48 0.27 9.65 16 14 O -0.49 -10.43 14.88 -26.67 -0.40 -10.82 16 15 O -0.36 -7.11 9.42 -40.64 -0.38 -7.49 16 16 C 0.08 1.86 5.41 37.16 0.20 2.06 16 17 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 18 C -0.53 -15.10 9.66 -34.44 -0.33 -15.44 16 19 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 22 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.39 7.63 -51.93 -0.40 0.00 16 28 H 0.06 0.39 7.63 -51.93 -0.40 0.00 16 29 H 0.14 1.11 6.17 -52.48 -0.32 0.79 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.16 1.83 7.57 -52.49 -0.40 1.43 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 38 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -34.08 335.83 -8.25 -42.33 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.83 Total: -2.75 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.46 Total: -11.91 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.77 Total: -26.78 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.13 Total: -22.72 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.08 -8.25 -42.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021712443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.977 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds