Wall clock time and date at job start Tue Mar 31 2020 03:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35725 * 116.99599 * 2 1 4 4 C 1.36382 * 119.65974 * 0.02562 * 3 2 1 5 5 C 1.40458 * 120.00013 * 179.97438 * 4 3 2 6 6 C 1.40593 * 120.98065 * 180.02562 * 5 4 3 7 7 C 1.36093 * 119.72250 * 180.02562 * 6 5 4 8 8 C 1.39404 * 121.02405 * 359.97438 * 7 6 5 9 9 C 1.36061 * 120.97792 * 359.97327 * 8 7 6 10 10 C 1.40712 * 119.67657 * 0.02720 * 9 8 7 11 11 C 1.40175 * 121.04241 * 179.97438 * 10 9 8 12 12 C 1.38620 * 119.52126 * 180.30285 * 11 10 9 13 13 C 1.47454 * 119.79235 * 179.72116 * 12 11 10 14 14 O 1.21502 * 119.99820 * 180.02562 * 13 12 11 15 15 O 1.34753 * 119.99941 * 359.97438 * 13 12 11 16 16 C 1.45201 * 116.99699 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46649 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46605 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00143 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99771 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99992 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99887 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46952 * 89.99821 * 22 20 18 24 24 H 1.48499 * 109.47108 * 209.99955 * 22 20 18 25 25 H 1.48494 * 109.47261 * 330.00104 * 22 20 18 26 26 H 1.09005 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47252 * 299.99873 * 1 2 3 28 28 H 1.08995 * 109.47334 * 59.99826 * 1 2 3 29 29 H 1.08006 * 119.99661 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.13508 * 0.03922 * 6 5 4 31 31 H 1.08003 * 119.48877 * 180.02562 * 7 6 5 32 32 H 1.08003 * 119.51099 * 180.02562 * 8 7 6 33 33 H 1.07993 * 120.16167 * 180.02562 * 9 8 7 34 34 H 1.08002 * 120.23415 * 0.02562 * 11 10 9 35 35 H 1.08996 * 109.47752 * 300.00366 * 16 15 13 36 36 H 1.09002 * 109.46758 * 60.00537 * 16 15 13 37 37 H 1.08999 * 109.46939 * 299.99696 * 17 16 15 38 38 H 1.08991 * 109.47023 * 60.00231 * 17 16 15 39 39 H 0.97007 * 119.99973 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2955 2.3487 0.0005 5 6 1.9256 3.6040 0.0011 6 6 1.1730 4.7915 0.0022 7 6 1.8102 5.9941 0.0022 8 6 3.2021 6.0697 0.0016 9 6 3.9647 4.9429 0.0016 10 6 3.3427 3.6807 0.0016 11 6 4.1004 2.5015 0.0011 12 6 3.4549 1.2748 -0.0053 13 6 4.2461 0.0305 -0.0121 14 8 3.6841 -1.0467 -0.0182 15 8 5.5924 0.0882 -0.0127 16 6 6.3063 -1.1762 -0.0190 17 6 7.8132 -0.9110 -0.0180 18 6 8.5541 -2.2233 -0.0252 19 1 8.0052 -3.1533 -0.0304 20 6 9.9328 -2.2365 -0.0262 21 7 10.5794 -3.3816 -0.0319 22 14 10.8823 -0.6277 -0.0194 23 1 11.1348 -0.2079 1.3825 24 1 12.1776 -0.8144 -0.7212 25 1 10.0892 0.4180 -0.7140 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2173 2.2856 0.0005 30 1 0.0939 4.7495 0.0032 31 1 1.2283 6.9040 0.0034 32 1 3.6824 7.0371 0.0020 33 1 5.0421 5.0169 0.0016 34 1 5.1794 2.5483 0.0011 35 1 6.0381 -1.7494 0.8684 36 1 6.0370 -1.7410 -0.9115 37 1 8.0817 -0.3377 -0.9053 38 1 8.0821 -0.3463 0.8746 39 1 11.5495 -3.3909 -0.0323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021712443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:04 Heat of formation + Delta-G solvation = -101.452878 kcal Electronic energy + Delta-G solvation = -23061.220546 eV Core-core repulsion = 19512.343413 eV Total energy + Delta-G solvation = -3548.877133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.119 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04531 -40.93558 -39.84917 -37.63363 -36.60078 -35.38942 -33.72447 -32.80905 -31.52476 -29.97872 -28.33148 -27.38184 -25.47711 -23.78632 -23.01602 -22.68773 -22.21051 -19.50104 -19.31967 -18.79073 -18.29689 -17.60764 -17.55233 -16.70685 -16.54960 -16.26034 -16.09811 -15.70103 -15.51968 -15.19838 -14.83548 -14.44449 -14.42148 -14.16930 -14.04077 -13.35427 -13.34123 -13.15660 -12.78148 -12.64450 -12.50264 -12.46888 -12.24399 -11.89992 -11.81022 -11.57407 -11.55557 -11.44633 -11.37452 -10.90907 -10.81527 -9.50573 -8.76597 -8.34662 -6.43302 -0.81248 -0.15515 0.89919 1.29480 1.38320 1.40516 1.53266 1.61323 2.11431 2.24380 2.34811 3.00075 3.06830 3.44115 3.59972 3.86532 3.95449 3.99411 4.14497 4.15130 4.18801 4.27066 4.36515 4.37954 4.39617 4.59371 4.60049 4.69206 4.71556 4.85806 4.89975 5.04138 5.15959 5.18639 5.27736 5.45498 5.51382 5.55712 5.57075 5.59806 5.99333 6.15244 6.34039 6.62518 6.70683 7.21666 8.81656 Molecular weight = 300.12amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.003495 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.373136 B = 8010.283783 C = 9662.897461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.163 3.837 4 C -0.216 4.216 5 C 0.000 4.000 6 C -0.134 4.134 7 C -0.085 4.085 8 C -0.134 4.134 9 C -0.090 4.090 10 C -0.117 4.117 11 C 0.010 3.990 12 C -0.172 4.172 13 C 0.497 3.503 14 O -0.525 6.525 15 O -0.357 6.357 16 C 0.095 3.905 17 C -0.001 4.001 18 C -0.544 4.544 19 H 0.033 0.967 20 C 0.011 3.989 21 N -0.945 5.945 22 Si 0.956 3.044 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.242 1.242 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.168 0.832 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.690 24.708 0.108 33.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.116 3.884 4 C -0.235 4.235 5 C -0.001 4.001 6 C -0.152 4.152 7 C -0.103 4.103 8 C -0.152 4.152 9 C -0.108 4.108 10 C -0.117 4.117 11 C -0.009 4.009 12 C -0.174 4.174 13 C 0.343 3.657 14 O -0.415 6.415 15 O -0.274 6.274 16 C 0.022 3.978 17 C -0.038 4.038 18 C -0.582 4.582 19 H 0.051 0.949 20 C -0.187 4.187 21 N -0.585 5.585 22 Si 0.778 3.222 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.165 1.165 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.185 0.815 30 H 0.171 0.829 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.177 0.823 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.586 24.057 0.102 32.998 hybrid contribution 0.554 -0.718 0.017 0.907 sum -22.032 23.339 0.119 32.096 Atomic orbital electron populations 1.23456 0.76262 1.05529 1.02898 1.86343 1.23590 1.26324 1.87126 1.18631 0.89973 0.85984 0.93796 1.21101 1.01231 0.89859 1.11306 1.18239 0.92367 0.94199 0.95251 1.21292 1.00998 0.90808 1.02103 1.21400 0.94931 0.98754 0.95212 1.21251 0.94309 0.99343 1.00250 1.21376 1.01357 0.90707 0.97327 1.18237 0.93202 0.93984 1.06244 1.21871 1.01258 0.89386 0.88340 1.18606 0.90542 0.91341 1.16897 1.21484 0.81369 0.89931 0.72937 1.90828 1.72301 1.31870 1.46511 1.86486 1.19345 1.37662 1.83866 1.22967 0.92219 0.81635 1.00997 1.19457 0.89092 0.96638 0.98642 1.21113 0.92271 0.92260 1.52557 0.94864 1.25984 0.98543 1.00853 0.93319 1.70047 1.08938 1.28151 1.51348 0.85574 0.77775 0.79231 0.79618 1.18656 1.20535 1.16529 0.87235 0.90706 0.90712 0.81474 0.82924 0.82633 0.83059 0.83588 0.82271 0.92643 0.92654 0.94401 0.94495 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.80 113.37 1.11 1.32 16 2 O -0.32 -9.52 8.50 -69.31 -0.59 -10.11 16 3 C 0.16 4.56 6.66 22.55 0.15 4.71 16 4 C -0.22 -4.36 8.71 22.38 0.19 -4.16 16 5 C 0.00 -0.01 5.75 -21.25 -0.12 -0.13 16 6 C -0.13 -1.71 9.76 22.35 0.22 -1.49 16 7 C -0.09 -0.86 9.95 22.05 0.22 -0.64 16 8 C -0.13 -1.53 9.95 22.04 0.22 -1.31 16 9 C -0.09 -1.41 9.76 22.37 0.22 -1.19 16 10 C -0.12 -2.45 5.74 -21.29 -0.12 -2.57 16 11 C 0.01 0.24 9.35 22.83 0.21 0.46 16 12 C -0.17 -5.44 5.88 -20.05 -0.12 -5.56 16 13 C 0.50 19.66 7.88 70.25 0.55 20.21 16 14 O -0.52 -23.83 14.88 26.90 0.40 -23.43 16 15 O -0.36 -14.46 9.42 -56.64 -0.53 -15.00 16 16 C 0.10 4.36 5.41 71.98 0.39 4.75 16 17 C 0.00 -0.04 4.42 29.85 0.13 0.09 16 18 C -0.54 -32.29 9.66 25.60 0.25 -32.05 16 19 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 20 C 0.01 0.64 5.47 84.66 0.46 1.10 16 21 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 22 Si 0.96 43.72 27.47 68.60 1.88 45.60 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 26 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.07 0.93 7.63 -2.39 -0.02 0.91 16 28 H 0.07 0.93 7.63 -2.39 -0.02 0.91 16 29 H 0.17 2.19 6.17 -2.91 -0.02 2.18 16 30 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 31 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 32 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 33 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.16 3.71 7.57 -2.91 -0.02 3.69 16 35 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.04 1.78 7.20 -2.39 -0.02 1.77 16 38 H 0.04 1.71 7.57 -2.39 -0.02 1.70 16 39 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -77.75 335.83 6.44 -71.31 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.01 Total: 7.39 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 3.97 Total: -16.45 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.30 Total: -59.32 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -0.72 Total: -48.54 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Total: -77.75 6.44 -71.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021712443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.140 kcal (2) G-P(sol) polarization free energy of solvation -77.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds