Wall clock time and date at job start Tue Mar 31 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37098 * 119.99899 * 2 1 4 4 H 1.08004 * 120.00225 * 214.22382 * 3 2 1 5 5 C 1.38948 * 120.00349 * 34.22670 * 3 2 1 6 6 N 1.31412 * 119.99558 * 5.35374 * 5 3 2 7 7 Si 1.86803 * 120.00282 * 185.35619 * 5 3 2 8 8 H 1.48499 * 109.46980 * 60.00059 * 7 5 3 9 9 H 1.48497 * 109.47009 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46803 * 299.99936 * 7 5 3 11 11 C 1.34772 * 120.00004 * 180.02562 * 2 1 3 12 12 O 1.21297 * 120.00312 * 180.02562 * 11 2 1 13 13 C 1.50705 * 120.00034 * 359.97438 * 11 2 1 14 14 H 1.09000 * 108.56495 * 61.82460 * 13 11 2 15 15 C 1.54564 * 108.91436 * 303.73643 * 13 11 2 16 16 S 1.84210 * 101.41875 * 216.23091 * 15 13 11 17 17 C 1.84072 * 93.91119 * 32.04343 * 16 15 13 18 18 N 1.45505 * 108.75049 * 180.02562 * 13 11 2 19 19 C 1.34772 * 122.43288 * 299.88979 * 18 13 11 20 20 O 1.21278 * 119.99854 * 4.95387 * 19 18 13 21 21 C 1.50696 * 119.99962 * 184.95144 * 19 18 13 22 22 C 1.53002 * 109.47144 * 186.89329 * 21 19 18 23 23 C 1.53002 * 109.47149 * 66.89886 * 21 19 18 24 24 C 1.52998 * 109.47315 * 306.89337 * 21 19 18 25 25 H 1.08998 * 109.47466 * 264.94976 * 1 2 3 26 26 H 1.09005 * 109.47505 * 24.94661 * 1 2 3 27 27 H 1.08997 * 109.47542 * 144.95005 * 1 2 3 28 28 H 0.97006 * 119.99484 * 180.02562 * 6 5 3 29 29 H 1.08998 * 111.19628 * 98.10893 * 15 13 11 30 30 H 1.09002 * 110.83058 * 334.19625 * 15 13 11 31 31 H 1.08998 * 110.78297 * 208.28180 * 17 16 15 32 32 H 1.09003 * 110.94069 * 84.92533 * 17 16 15 33 33 H 1.08994 * 109.47672 * 300.00434 * 22 21 19 34 34 H 1.08999 * 109.46818 * 60.00243 * 22 21 19 35 35 H 1.08997 * 109.47186 * 179.97438 * 22 21 19 36 36 H 1.09006 * 109.47020 * 174.93673 * 23 21 19 37 37 H 1.09004 * 109.46983 * 294.92845 * 23 21 19 38 38 H 1.08993 * 109.47295 * 54.93077 * 23 21 19 39 39 H 1.08999 * 109.47369 * 300.00199 * 24 21 19 40 40 H 1.09002 * 109.46754 * 60.00544 * 24 21 19 41 41 H 1.09005 * 109.47354 * 179.97438 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0902 1.2684 -0.5261 5 6 1.6362 2.2865 0.6768 6 7 0.5484 2.1607 1.4033 7 14 2.4910 3.9429 0.5539 8 1 2.5241 4.3787 -0.8653 9 1 1.7490 4.9440 1.3615 10 1 3.8792 3.8227 1.0674 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 1 0.7889 -2.5287 -0.9111 15 6 0.4320 -2.5005 1.2158 16 16 0.5139 -4.2752 1.7023 17 6 2.2618 -4.4735 1.1603 18 7 2.3447 -3.5663 -0.0005 19 6 3.2474 -3.7359 -0.9867 20 8 3.3406 -2.9120 -1.8718 21 6 4.1410 -4.9494 -0.9896 22 6 5.1786 -4.8160 -2.1062 23 6 3.2970 -6.2037 -1.2250 24 6 4.8547 -5.0605 0.3591 25 1 -0.3634 -0.0905 1.0236 26 1 -0.3634 0.9318 -0.4335 27 1 -0.3634 -0.8413 -0.5901 28 1 0.1892 2.9282 1.8755 29 1 -0.5813 -2.2195 0.9289 30 1 0.8033 -1.8580 2.0143 31 1 2.4597 -5.5029 0.8616 32 1 2.9508 -4.1609 1.9450 33 1 4.6703 -4.7368 -3.0671 34 1 5.7798 -3.9224 -1.9385 35 1 5.8252 -5.6934 -2.1080 36 1 3.9519 -7.0703 -1.3169 37 1 2.6188 -6.3484 -0.3840 38 1 2.7192 -6.0861 -2.1417 39 1 5.4559 -4.1669 0.5268 40 1 4.1155 -5.1556 1.1545 41 1 5.5007 -5.9385 0.3572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078534634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:25 Heat of formation + Delta-G solvation = -36.738486 kcal Electronic energy + Delta-G solvation = -24171.997367 eV Core-core repulsion = 20793.663163 eV Total energy + Delta-G solvation = -3378.334204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.48547 -38.45159 -35.77037 -35.59916 -34.53276 -32.03550 -30.53020 -27.73593 -27.42335 -26.79538 -26.18492 -25.08673 -23.79887 -21.62267 -19.72216 -18.35440 -17.03049 -16.93312 -16.59840 -16.30802 -15.23082 -14.96714 -14.58447 -14.48605 -14.33564 -14.02080 -13.73259 -13.63192 -13.20946 -12.75334 -12.53141 -12.35779 -12.20773 -12.08514 -11.90216 -11.75675 -11.66538 -11.42933 -11.26045 -11.15465 -10.94070 -10.90090 -10.73019 -10.44708 -10.38428 -10.31533 -9.30668 -8.96078 -8.85234 -8.11210 -7.82607 -7.54868 -6.31785 -3.96421 1.70128 2.06971 2.85281 3.09743 3.20653 3.25007 3.30040 3.80002 4.13671 4.36890 4.64369 4.74636 4.77791 4.85038 4.93076 5.12481 5.15668 5.21274 5.27076 5.45763 5.53522 5.60981 5.65155 5.74118 5.76194 5.87481 5.90487 5.96214 6.01435 6.20479 6.21968 6.33665 6.50003 6.73791 7.08351 7.51692 7.56557 8.19966 8.45684 8.55747 9.19679 9.38018 9.96853 10.74170 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.005391 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.060138 B = 5192.735911 C = 6162.345937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.446 5.446 3 C -0.302 4.302 4 H 0.090 0.910 5 C 0.035 3.965 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.454 3.546 12 O -0.556 6.556 13 C 0.120 3.880 14 H 0.095 0.905 15 C -0.049 4.049 16 S -0.297 6.297 17 C 0.151 3.849 18 N -0.595 5.595 19 C 0.542 3.458 20 O -0.503 6.503 21 C -0.082 4.082 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.160 4.160 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.268 0.732 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -15.484 -0.388 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.167 5.167 3 C -0.431 4.431 4 H 0.108 0.892 5 C -0.168 4.168 6 N -0.524 5.524 7 Si 0.753 3.247 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.238 3.762 12 O -0.437 6.437 13 C 0.011 3.989 14 H 0.112 0.888 15 C -0.198 4.198 16 S -0.070 6.070 17 C -0.082 4.082 18 N -0.332 5.332 19 C 0.328 3.672 20 O -0.375 6.375 21 C -0.085 4.085 22 C -0.182 4.182 23 C -0.201 4.201 24 C -0.217 4.217 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.000 -15.662 -0.286 15.664 hybrid contribution 0.873 1.747 -0.261 1.970 sum 0.874 -13.915 -0.546 13.953 Atomic orbital electron populations 1.21642 0.81955 0.99949 1.00297 1.43344 1.04988 1.04331 1.64013 1.19455 1.06540 0.86330 1.30727 0.89180 1.25418 0.96546 1.00205 0.94610 1.69891 1.21434 1.31422 1.29688 0.86007 0.79397 0.80970 0.78365 1.19901 1.20934 1.19827 1.20081 0.88318 0.84372 0.83398 1.90535 1.13498 1.86229 1.53466 1.21121 0.90347 0.88365 0.99088 0.88755 1.24723 1.03297 0.92533 0.99227 1.88109 1.17717 1.16701 1.84470 1.24808 0.94151 0.98221 0.91010 1.47995 1.35910 1.26978 1.22288 1.20197 0.79221 0.86950 0.80818 1.90731 1.66689 1.43477 1.36592 1.20746 0.95815 0.93459 0.98490 1.21635 0.97428 1.01931 0.97254 1.21990 0.99690 0.95992 1.02432 1.22294 1.01149 1.03078 0.95200 0.92524 0.91015 0.95831 0.92226 0.85445 0.87232 0.85897 0.88637 0.91872 0.91746 0.92212 0.91257 0.91840 0.91875 0.91430 0.91119 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.27 7.06 59.84 0.42 2.69 16 2 N -0.45 -11.42 2.98 -122.19 -0.36 -11.78 16 3 C -0.30 -8.53 9.02 -14.93 -0.13 -8.67 16 4 H 0.09 2.71 7.62 -52.48 -0.40 2.31 16 5 C 0.04 0.94 5.17 -17.47 -0.09 0.85 16 6 N -0.89 -23.39 11.11 55.50 0.62 -22.77 16 7 Si 0.93 21.10 29.56 -169.99 -5.02 16.08 16 8 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 C 0.45 11.24 6.31 -10.99 -0.07 11.17 16 12 O -0.56 -15.83 14.26 -15.39 -0.22 -16.05 16 13 C 0.12 2.29 2.18 -68.79 -0.15 2.14 16 14 H 0.09 1.78 7.48 -51.93 -0.39 1.39 16 15 C -0.05 -0.80 5.15 37.98 0.20 -0.60 16 16 S -0.30 -4.15 23.44 -107.50 -2.52 -6.67 16 17 C 0.15 2.03 5.38 60.43 0.32 2.35 16 18 N -0.60 -10.30 2.76 -169.19 -0.47 -10.76 16 19 C 0.54 9.90 5.64 -10.99 -0.06 9.84 16 20 O -0.50 -11.60 14.37 -15.38 -0.22 -11.82 16 21 C -0.08 -1.07 0.75 -155.66 -0.12 -1.19 16 22 C -0.12 -1.61 7.79 37.16 0.29 -1.32 16 23 C -0.14 -1.44 8.30 37.16 0.31 -1.13 16 24 C -0.16 -1.81 8.07 37.16 0.30 -1.51 16 25 H 0.06 1.20 6.85 -51.93 -0.36 0.85 16 26 H 0.07 1.65 7.25 -51.93 -0.38 1.27 16 27 H 0.02 0.42 6.07 -51.93 -0.32 0.11 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.13 1.81 6.68 -51.93 -0.35 1.46 16 30 H 0.11 1.98 7.81 -51.93 -0.41 1.57 16 31 H 0.12 1.30 3.80 -51.93 -0.20 1.10 16 32 H 0.10 1.26 7.22 -51.93 -0.38 0.89 16 33 H 0.06 0.85 8.02 -51.93 -0.42 0.44 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.58 5.23 -51.93 -0.27 0.31 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.73 3.76 -51.93 -0.20 0.54 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -33.66 325.56 -7.79 -41.45 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.72 Total: 2.78 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 1.22 Total: 14.63 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.21 Total: -45.32 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.44 Total: -27.87 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.52 Total: -6.67 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.66 -7.79 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078534634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.714 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds