Wall clock time and date at job start Tue Mar 31 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37098 * 119.99899 * 2 1 4 4 H 1.08004 * 120.00225 * 214.22382 * 3 2 1 5 5 C 1.38948 * 120.00349 * 34.22670 * 3 2 1 6 6 N 1.31412 * 119.99558 * 5.35374 * 5 3 2 7 7 Si 1.86803 * 120.00282 * 185.35619 * 5 3 2 8 8 H 1.48499 * 109.46980 * 60.00059 * 7 5 3 9 9 H 1.48497 * 109.47009 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46803 * 299.99936 * 7 5 3 11 11 C 1.34772 * 120.00004 * 180.02562 * 2 1 3 12 12 O 1.21297 * 120.00312 * 180.02562 * 11 2 1 13 13 C 1.50705 * 120.00034 * 359.97438 * 11 2 1 14 14 H 1.09000 * 108.56495 * 61.82460 * 13 11 2 15 15 C 1.54564 * 108.91436 * 303.73643 * 13 11 2 16 16 S 1.84210 * 101.41875 * 216.23091 * 15 13 11 17 17 C 1.84072 * 93.91119 * 32.04343 * 16 15 13 18 18 N 1.45505 * 108.75049 * 180.02562 * 13 11 2 19 19 C 1.34772 * 122.43288 * 299.88979 * 18 13 11 20 20 O 1.21278 * 119.99854 * 4.95387 * 19 18 13 21 21 C 1.50696 * 119.99962 * 184.95144 * 19 18 13 22 22 C 1.53002 * 109.47144 * 186.89329 * 21 19 18 23 23 C 1.53002 * 109.47149 * 66.89886 * 21 19 18 24 24 C 1.52998 * 109.47315 * 306.89337 * 21 19 18 25 25 H 1.08998 * 109.47466 * 264.94976 * 1 2 3 26 26 H 1.09005 * 109.47505 * 24.94661 * 1 2 3 27 27 H 1.08997 * 109.47542 * 144.95005 * 1 2 3 28 28 H 0.97006 * 119.99484 * 180.02562 * 6 5 3 29 29 H 1.08998 * 111.19628 * 98.10893 * 15 13 11 30 30 H 1.09002 * 110.83058 * 334.19625 * 15 13 11 31 31 H 1.08998 * 110.78297 * 208.28180 * 17 16 15 32 32 H 1.09003 * 110.94069 * 84.92533 * 17 16 15 33 33 H 1.08994 * 109.47672 * 300.00434 * 22 21 19 34 34 H 1.08999 * 109.46818 * 60.00243 * 22 21 19 35 35 H 1.08997 * 109.47186 * 179.97438 * 22 21 19 36 36 H 1.09006 * 109.47020 * 174.93673 * 23 21 19 37 37 H 1.09004 * 109.46983 * 294.92845 * 23 21 19 38 38 H 1.08993 * 109.47295 * 54.93077 * 23 21 19 39 39 H 1.08999 * 109.47369 * 300.00199 * 24 21 19 40 40 H 1.09002 * 109.46754 * 60.00544 * 24 21 19 41 41 H 1.09005 * 109.47354 * 179.97438 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0902 1.2684 -0.5261 5 6 1.6362 2.2865 0.6768 6 7 0.5484 2.1607 1.4033 7 14 2.4910 3.9429 0.5539 8 1 2.5241 4.3787 -0.8653 9 1 1.7490 4.9440 1.3615 10 1 3.8792 3.8227 1.0674 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 1 0.7889 -2.5287 -0.9111 15 6 0.4320 -2.5005 1.2158 16 16 0.5139 -4.2752 1.7023 17 6 2.2618 -4.4735 1.1603 18 7 2.3447 -3.5663 -0.0005 19 6 3.2474 -3.7359 -0.9867 20 8 3.3406 -2.9120 -1.8718 21 6 4.1410 -4.9494 -0.9896 22 6 5.1786 -4.8160 -2.1062 23 6 3.2970 -6.2037 -1.2250 24 6 4.8547 -5.0605 0.3591 25 1 -0.3634 -0.0905 1.0236 26 1 -0.3634 0.9318 -0.4335 27 1 -0.3634 -0.8413 -0.5901 28 1 0.1892 2.9282 1.8755 29 1 -0.5813 -2.2195 0.9289 30 1 0.8033 -1.8580 2.0143 31 1 2.4597 -5.5029 0.8616 32 1 2.9508 -4.1609 1.9450 33 1 4.6703 -4.7368 -3.0671 34 1 5.7798 -3.9224 -1.9385 35 1 5.8252 -5.6934 -2.1080 36 1 3.9519 -7.0703 -1.3169 37 1 2.6188 -6.3484 -0.3840 38 1 2.7192 -6.0861 -2.1417 39 1 5.4559 -4.1669 0.5268 40 1 4.1155 -5.1556 1.1545 41 1 5.5007 -5.9385 0.3572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078534634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:25 Heat of formation + Delta-G solvation = -58.632999 kcal Electronic energy + Delta-G solvation = -24172.946785 eV Core-core repulsion = 20793.663163 eV Total energy + Delta-G solvation = -3379.283621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.90898 -40.18431 -37.28883 -36.90457 -36.44751 -33.92922 -32.09737 -28.88984 -28.27700 -28.20059 -27.76663 -26.86595 -25.30226 -23.09605 -21.15969 -19.85980 -18.94366 -18.51344 -18.11449 -17.54750 -16.94793 -16.41185 -16.10356 -16.02928 -15.67067 -15.49185 -15.15379 -14.85301 -14.78481 -14.30180 -13.93372 -13.67300 -13.47882 -13.29381 -13.20274 -13.07017 -12.97804 -12.92273 -12.80636 -12.68147 -12.58036 -12.40108 -12.16040 -11.99073 -11.93591 -11.52136 -11.00141 -10.73849 -10.46041 -9.78954 -9.57231 -8.95351 -8.36863 -6.10299 0.54071 0.82807 1.35713 1.36135 1.44428 1.52180 1.76627 1.98038 2.25280 2.95902 2.98761 3.20936 3.42804 3.71227 3.74547 3.88012 3.91794 3.96819 4.14791 4.21441 4.34362 4.46795 4.54204 4.66421 4.69215 4.77516 4.89885 4.91246 4.94356 4.98168 5.07427 5.18804 5.28271 5.31702 5.36826 5.39181 6.11157 6.18353 6.47022 7.10069 7.18634 7.39023 7.98784 8.66610 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.005391 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.060138 B = 5192.735911 C = 6162.345937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.461 5.461 3 C -0.342 4.342 4 H 0.055 0.945 5 C 0.007 3.993 6 N -0.892 5.892 7 Si 0.984 3.016 8 H -0.270 1.270 9 H -0.264 1.264 10 H -0.281 1.281 11 C 0.442 3.558 12 O -0.606 6.606 13 C 0.129 3.871 14 H 0.097 0.903 15 C -0.051 4.051 16 S -0.255 6.255 17 C 0.143 3.857 18 N -0.599 5.599 19 C 0.529 3.471 20 O -0.565 6.565 21 C -0.079 4.079 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.156 4.156 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.275 0.725 29 H 0.149 0.851 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.082 0.918 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.628 -18.002 0.704 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.181 5.181 3 C -0.471 4.471 4 H 0.073 0.927 5 C -0.195 4.195 6 N -0.529 5.529 7 Si 0.808 3.192 8 H -0.195 1.195 9 H -0.188 1.188 10 H -0.207 1.207 11 C 0.228 3.772 12 O -0.490 6.490 13 C 0.019 3.981 14 H 0.115 0.885 15 C -0.200 4.200 16 S -0.028 6.028 17 C -0.088 4.088 18 N -0.334 5.334 19 C 0.318 3.682 20 O -0.442 6.442 21 C -0.082 4.082 22 C -0.181 4.181 23 C -0.194 4.194 24 C -0.213 4.213 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.106 0.894 31 H 0.178 0.822 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.970 -18.212 0.845 18.257 hybrid contribution 1.174 2.507 -0.584 2.829 sum 0.205 -15.705 0.261 15.708 Atomic orbital electron populations 1.21638 0.79688 1.00504 1.01013 1.43599 1.06492 1.04083 1.63931 1.19315 1.06548 0.88576 1.32633 0.92735 1.26063 0.97049 1.02696 0.93736 1.69935 1.21477 1.32496 1.29019 0.85147 0.78026 0.77338 0.78692 1.19460 1.18800 1.20704 1.21069 0.88220 0.86078 0.81794 1.90487 1.15860 1.87369 1.55304 1.21001 0.90406 0.85990 1.00686 0.88491 1.24559 1.03351 0.94818 0.97270 1.87976 1.17348 1.13283 1.84169 1.25176 0.94439 0.99370 0.89834 1.48170 1.35340 1.26718 1.23181 1.21380 0.79144 0.87807 0.79827 1.90693 1.68455 1.45986 1.39033 1.20879 0.95340 0.92417 0.99548 1.21650 0.97536 1.02206 0.96676 1.21988 0.99877 0.95009 1.02477 1.22309 1.01493 1.03288 0.94253 0.92131 0.92840 0.92195 0.91547 0.83297 0.89387 0.82222 0.88262 0.93186 0.95012 0.88183 0.87792 0.90610 0.92744 0.94595 0.89915 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.98 7.06 127.77 0.90 5.88 16 2 N -0.46 -24.55 2.98 -658.90 -1.96 -26.51 16 3 C -0.34 -20.30 9.02 84.04 0.76 -19.54 16 4 H 0.05 3.54 7.62 -2.91 -0.02 3.52 16 5 C 0.01 0.39 5.17 84.93 0.44 0.83 16 6 N -0.89 -47.17 11.11 21.66 0.24 -46.93 16 7 Si 0.98 43.91 29.56 68.60 2.03 45.94 16 8 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 9 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 C 0.44 22.87 6.31 87.66 0.55 23.43 16 12 O -0.61 -36.69 14.26 16.93 0.24 -36.45 16 13 C 0.13 4.96 2.18 44.97 0.10 5.05 16 14 H 0.10 3.66 7.48 -2.39 -0.02 3.64 16 15 C -0.05 -1.60 5.15 72.51 0.37 -1.22 16 16 S -0.25 -6.38 23.44 -56.49 -1.32 -7.70 16 17 C 0.14 3.50 5.38 127.56 0.69 4.18 16 18 N -0.60 -20.49 2.76 -807.58 -2.23 -22.72 16 19 C 0.53 19.66 5.64 87.66 0.49 20.15 16 20 O -0.57 -27.60 14.37 16.99 0.24 -27.35 16 21 C -0.08 -1.95 0.75 -52.93 -0.04 -1.99 16 22 C -0.12 -3.12 7.79 71.98 0.56 -2.56 16 23 C -0.14 -2.22 8.30 71.98 0.60 -1.62 16 24 C -0.16 -3.19 8.07 71.98 0.58 -2.61 16 25 H 0.06 2.56 6.85 -2.39 -0.02 2.54 16 26 H 0.05 2.49 7.25 -2.38 -0.02 2.47 16 27 H 0.06 2.12 6.07 -2.39 -0.01 2.10 16 28 H 0.27 13.63 8.31 -92.70 -0.77 12.86 16 29 H 0.15 3.93 6.68 -2.39 -0.02 3.91 16 30 H 0.09 3.16 7.81 -2.39 -0.02 3.14 16 31 H 0.16 2.69 3.80 -2.39 -0.01 2.68 16 32 H 0.10 2.41 7.22 -2.39 -0.02 2.39 16 33 H 0.05 1.37 8.02 -2.39 -0.02 1.35 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.08 1.03 5.23 -2.38 -0.01 1.02 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.46 3.76 -2.39 -0.01 1.45 16 41 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -79.43 325.56 4.29 -75.14 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.04 Total: 16.59 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 6.00 Total: 29.99 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -3.95 Total: -96.16 kcal Atomic # 8 Polarization: -64.29 SS G_CDS: 0.49 Total: -63.80 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -6.38 SS G_CDS: -1.32 Total: -7.70 kcal Total: -79.43 4.29 -75.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078534634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.511 kcal (2) G-P(sol) polarization free energy of solvation -79.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds