Wall clock time and date at job start Tue Mar 31 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34940 * 126.04117 * 2 1 4 4 C 1.35321 * 107.74729 * 179.74995 * 3 2 1 5 5 S 1.76205 * 126.03933 * 180.27582 * 4 3 2 6 6 O 1.42098 * 106.40351 * 23.70305 * 5 4 3 7 7 O 1.42097 * 106.40046 * 156.62847 * 5 4 3 8 8 N 1.65607 * 107.21635 * 270.16429 * 5 4 3 9 9 C 1.46959 * 120.59436 * 269.72568 * 8 5 4 10 10 C 1.53802 * 108.40259 * 124.75653 * 9 8 5 11 11 N 1.46969 * 108.58015 * 49.63444 * 10 9 8 12 12 C 1.36938 * 120.59145 * 124.66819 * 11 10 9 13 13 H 1.08001 * 119.99524 * 208.19296 * 12 11 10 14 14 C 1.38807 * 120.00507 * 28.19262 * 12 11 10 15 15 N 1.31625 * 119.99656 * 17.60132 * 14 12 11 16 16 Si 1.86800 * 120.00361 * 197.60990 * 14 12 11 17 17 H 1.48499 * 109.47052 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47468 * 119.99872 * 16 14 12 19 19 H 1.48503 * 109.47064 * 239.99713 * 16 14 12 20 20 C 1.46961 * 118.81339 * 304.65063 * 11 10 9 21 21 C 1.46964 * 120.59068 * 89.99964 * 8 5 4 22 22 C 1.39870 * 107.91827 * 0.39568 * 4 3 2 23 23 N 1.30836 * 108.20343 * 359.59590 * 22 4 3 24 24 H 1.09004 * 109.47075 * 269.97996 * 1 2 3 25 25 H 1.09002 * 109.47101 * 29.97288 * 1 2 3 26 26 H 1.08999 * 109.47134 * 149.97259 * 1 2 3 27 27 H 1.08000 * 126.12486 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.60511 * 244.54411 * 9 8 5 29 29 H 1.09005 * 109.60921 * 5.04658 * 9 8 5 30 30 H 1.08998 * 109.74432 * 289.84540 * 10 9 8 31 31 H 1.09001 * 109.67718 * 169.38079 * 10 9 8 32 32 H 0.97005 * 119.99761 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.60636 * 295.47938 * 20 11 10 34 34 H 1.08991 * 109.75394 * 175.04976 * 20 11 10 35 35 H 1.09001 * 109.61383 * 354.94705 * 21 8 5 36 36 H 1.09002 * 109.60913 * 115.46175 * 21 8 5 37 37 H 1.07998 * 125.89430 * 179.86676 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 0.0056 5 16 4.9752 1.6938 0.0149 6 8 4.5707 2.9407 0.5633 7 8 6.0281 0.9100 0.5594 8 7 5.3788 1.9864 -1.5644 9 6 6.3033 1.0943 -2.2778 10 6 5.6090 0.5981 -3.5573 11 7 5.0535 1.7580 -4.2686 12 6 5.3873 2.0000 -5.5745 13 1 5.3806 3.0107 -5.9551 14 6 5.7341 0.9464 -6.4090 15 7 5.4191 -0.2876 -6.0765 16 14 6.6481 1.2796 -8.0037 17 1 6.8813 2.7394 -8.1447 18 1 7.9520 0.5691 -7.9848 19 1 5.8371 0.7954 -9.1495 20 6 4.1333 2.6533 -3.5536 21 6 4.8233 3.1464 -2.2756 22 6 3.5346 -0.7323 0.0000 23 7 2.2891 -1.1329 0.0001 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5143 27 1 1.9282 2.1192 -0.0004 28 1 7.2101 1.6400 -2.5385 29 1 6.5546 0.2445 -1.6430 30 1 4.8052 -0.0905 -3.2967 31 1 6.3331 0.0905 -4.1946 32 1 5.6612 -1.0239 -6.6598 33 1 3.2244 2.1111 -3.2926 34 1 3.8824 3.5050 -4.1857 35 1 4.0969 3.6522 -1.6395 36 1 5.6271 3.8349 -2.5363 37 1 4.4053 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103882146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:09 Heat of formation + Delta-G solvation = 42.727408 kcal Electronic energy + Delta-G solvation = -23338.627473 eV Core-core repulsion = 19860.198825 eV Total energy + Delta-G solvation = -3478.428648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.25615 -37.55134 -36.91986 -35.51375 -33.78690 -33.49288 -31.08972 -30.47865 -30.12722 -27.13823 -26.37940 -23.24248 -22.85570 -21.93151 -21.32815 -19.95376 -18.58099 -17.97499 -17.33608 -16.14867 -15.73320 -15.62852 -15.45534 -14.79455 -14.55025 -13.98979 -13.72630 -13.62005 -13.41161 -13.26244 -13.01428 -12.95953 -12.86152 -12.05722 -11.95661 -11.84251 -11.56730 -11.35183 -11.12360 -10.82964 -10.72281 -10.61993 -10.39234 -10.22174 -9.94920 -9.74694 -9.63999 -9.20708 -8.71330 -8.46011 -6.69358 -5.83929 -3.27811 0.79113 1.55110 2.30259 2.37145 3.34388 3.42536 3.43665 3.45468 4.11072 4.26500 4.45360 4.51181 4.71392 4.86393 5.01210 5.14230 5.18662 5.32364 5.45916 5.50962 5.54782 5.79229 5.95758 6.06256 6.31189 6.36786 6.39612 6.44695 6.65579 6.69295 6.82796 6.95395 7.30681 7.39689 7.57968 7.74702 8.38153 9.14394 9.77544 10.34618 11.23528 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.005204 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.291289 B = 5379.548309 C = 5990.984927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.366 5.366 3 C 0.176 3.824 4 C -0.810 4.810 5 S 2.721 3.279 6 O -0.974 6.974 7 O -0.965 6.965 8 N -0.986 5.986 9 C 0.096 3.904 10 C 0.158 3.842 11 N -0.588 5.588 12 C -0.253 4.253 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.901 5.901 16 Si 0.903 3.097 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.291 1.291 20 C 0.133 3.867 21 C 0.106 3.894 22 C 0.138 3.862 23 N -0.296 5.296 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.190 0.810 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.022 0.978 31 H 0.098 0.902 32 H 0.254 0.746 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 2.715 11.848 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.143 5.143 3 C 0.023 3.977 4 C -0.907 4.907 5 S 2.810 3.190 6 O -0.964 6.964 7 O -0.955 6.955 8 N -0.826 5.826 9 C -0.030 4.030 10 C 0.030 3.970 11 N -0.311 5.311 12 C -0.383 4.383 13 H 0.085 0.915 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.732 3.268 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.218 1.218 20 C 0.004 3.996 21 C -0.021 4.021 22 C -0.051 4.051 23 N -0.115 5.115 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.207 0.793 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.045 1.818 12.467 14.949 hybrid contribution 0.254 0.288 -1.278 1.334 sum -7.791 2.107 11.189 13.796 Atomic orbital electron populations 1.22023 0.73775 1.05265 1.03740 1.49047 1.07250 1.04093 1.53906 1.22407 0.89280 0.94042 0.91983 1.31837 1.16823 1.09238 1.32848 1.00948 0.72884 0.72791 0.72395 1.93513 1.84162 1.41856 1.76859 1.93528 1.53294 1.71971 1.76734 1.57416 1.58107 1.36456 1.30618 1.22403 0.92169 0.92382 0.96045 1.21257 0.97074 0.88896 0.89740 1.43898 1.49797 1.28115 1.09260 1.19233 1.40866 0.92274 0.85920 0.91517 1.25052 1.01146 0.95657 0.97740 1.70036 1.47823 0.98466 1.38249 0.86226 0.79540 0.77765 0.83229 1.20232 1.21474 1.21823 1.21259 0.91826 0.94567 0.91906 1.22015 0.98333 0.86539 0.95254 1.23507 0.95684 0.92222 0.93687 1.77415 1.01770 1.07425 1.24847 0.90242 0.88878 0.88733 0.79344 0.91439 0.90356 0.95954 0.88370 0.93592 0.96369 0.91743 0.90501 0.91191 0.78642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 11.47 59.85 0.69 1.38 16 2 N -0.37 -4.63 4.01 -68.16 -0.27 -4.90 16 3 C 0.18 2.24 11.24 -17.22 -0.19 2.05 16 4 C -0.81 -12.05 6.17 -40.01 -0.25 -12.30 16 5 S 2.72 43.70 5.84 -107.50 -0.63 43.07 16 6 O -0.97 -16.54 16.54 -57.17 -0.95 -17.49 16 7 O -0.97 -17.40 16.55 -57.17 -0.95 -18.35 16 8 N -0.99 -16.84 3.26 -113.01 -0.37 -17.20 16 9 C 0.10 1.79 6.58 -3.37 -0.02 1.76 16 10 C 0.16 3.56 5.53 -3.37 -0.02 3.55 16 11 N -0.59 -13.97 2.97 -171.77 -0.51 -14.48 16 12 C -0.25 -6.64 9.58 -15.06 -0.14 -6.79 16 13 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 14 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 15 N -0.90 -25.33 11.20 55.49 0.62 -24.71 16 16 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.13 2.57 6.67 -3.60 -0.02 2.54 16 21 C 0.11 1.74 6.55 -3.59 -0.02 1.72 16 22 C 0.14 2.11 11.81 -17.37 -0.21 1.90 16 23 N -0.30 -4.55 12.58 30.62 0.39 -4.16 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.32 7.08 -51.93 -0.37 0.95 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 2.48 5.98 -51.93 -0.31 2.17 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.19 7.94 -51.93 -0.41 0.78 16 35 H 0.08 1.07 7.09 -51.93 -0.37 0.70 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.20 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -34.54 321.76 -7.94 -42.47 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.81 Total: -0.93 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -0.28 Total: -4.19 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -0.14 Total: -65.46 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.89 Total: -35.84 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 43.70 SS G_CDS: -0.63 Total: 43.07 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.54 -7.94 -42.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.199 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds